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Sed0000379 (gene) of Chayote v1 genome

Gene IDSed0000379
OrganismSechium edule (Chayote v1)
Description60S acidic ribosomal P2
Genome locationLG06:43985701..43988005
RNA-Seq ExpressionSed0000379
SyntenySed0000379
Gene Ontology termsGO:0002182 - cytoplasmic translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain
IPR044076 - Ribosomal protein P2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150488.1 60S acidic ribosomal protein P2-4 [Cucumis sativus]1.3e-4189.57Show/hide
Query:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPA-AEAKKEEKVE
        MKIVAAYLLAVLGGNS+PS+KDLKDILGSVG E+D++RI LLL+NVKGKDIT+LIASGREKLASVPSGGGAAVAVA+ GGGGGGAAAPA AEAKKEEKVE
Subjt:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPA-AEAKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

XP_008446770.1 PREDICTED: 60S acidic ribosomal protein P2-4-like [Cucumis melo]3.3e-4290.43Show/hide
Query:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPA-AEAKKEEKVE
        MKIVAAYLLAVLGGN+SPS+KDLKDILGSVG EID++RIELLL+NVKGKD+T+LIASGREKLASVPSGGGAAVAVA+ GGGGGGAAAPA AEAKKEEKVE
Subjt:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPA-AEAKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

XP_022957078.1 60S acidic ribosomal protein P2-1-like [Cucurbita moschata]9.7e-4285.96Show/hide
Query:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPAAEAKKEEKVEE
        MKIVAAYLLAVLGGN+SPS+KDLKDILGSVG E+D+D+IELL+++VKGKDIT+LIASGREKLASVPSGGGAAVAVA+ GGGGG AA  AAE+KKEEKVEE
Subjt:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPAAEAKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

XP_023541212.1 60S acidic ribosomal protein P2-2-like [Cucurbita pepo subsp. pepo]1.3e-4186.96Show/hide
Query:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPAA-EAKKEEKVE
        MKIVAAYLLAVLGGNSSPS+KDLK+ILGSVG E+DD+RIELLL++VKGKD+T+LIASGREKLASVPSGGGAA+AVA+ GGGGGG AAPAA E+KKEEKVE
Subjt:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPAA-EAKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

XP_038891319.1 60S acidic ribosomal protein P2-2-like [Benincasa hispida]1.9e-4288.7Show/hide
Query:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAP-AAEAKKEEKVE
        MKIVAAYLLAVLGGNSSPS+KDLKDILGSVG EID++RIELLL+NVKGKD+T+LIASGREKLASVPSGGGA VA A+VGGGGGGA AP AAE+KKEEKVE
Subjt:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAP-AAEAKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

TrEMBL top hitse value%identityAlignment
A0A0A0KRE0 Uncharacterized protein6.1e-4289.57Show/hide
Query:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPA-AEAKKEEKVE
        MKIVAAYLLAVLGGNS+PS+KDLKDILGSVG E+D++RI LLL+NVKGKDIT+LIASGREKLASVPSGGGAAVAVA+ GGGGGGAAAPA AEAKKEEKVE
Subjt:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPA-AEAKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A1S3BFW0 60S acidic ribosomal protein P2-4-like1.6e-4290.43Show/hide
Query:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPA-AEAKKEEKVE
        MKIVAAYLLAVLGGN+SPS+KDLKDILGSVG EID++RIELLL+NVKGKD+T+LIASGREKLASVPSGGGAAVAVA+ GGGGGGAAAPA AEAKKEEKVE
Subjt:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPA-AEAKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A6J1FZV9 60S acidic ribosomal protein P2-2-like1.4e-4186.09Show/hide
Query:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPAA-EAKKEEKVE
        MKIVAAYLLAVLGGNSSPS+KDLK+ILGSVG E+DD++IELLL++VKGKD+T+LIASGREKLASVPSGGGAA+AVA+ GGGGGG AAPAA E+KKEEKVE
Subjt:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPAA-EAKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A6J1GZ75 60S acidic ribosomal protein P2-1-like4.7e-4285.96Show/hide
Query:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPAAEAKKEEKVEE
        MKIVAAYLLAVLGGN+SPS+KDLKDILGSVG E+D+D+IELL+++VKGKDIT+LIASGREKLASVPSGGGAAVAVA+ GGGGG AA  AAE+KKEEKVEE
Subjt:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPAAEAKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

A0A6J1J1Z8 60S acidic ribosomal protein P2-4-like8.0e-4285.96Show/hide
Query:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPAAEAKKEEKVEE
        MKIVAAYLLAVLGGN+SPS+KDLKDILGSVG E+D+D+IELL+++VKGKDIT+LIASGREKLASVPSGGGAAVAVA+ GGGGG AA  AAE+KKEEKVEE
Subjt:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPAAEAKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

SwissProt top hitse value%identityAlignment
P41099 60S acidic ribosomal protein P22.9e-3370.18Show/hide
Query:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPAAEAKKEEKVEE
        MK++AA+LLA+LGGN+SP+ +DLK IL SVG + DDD+IELLL+ VKGKDIT+LIASGRE+LASVPSGGG AVA A+ GGGG   AA A E KKEEK E 
Subjt:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPAAEAKKEEKVEE

Query:  KEESDDDMGFSLFD
         EESD+++GFSLFD
Subjt:  KEESDDDMGFSLFD

P46252 60S acidic ribosomal protein P2A1.0e-3373.68Show/hide
Query:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPAAEAKKEEKVEE
        MK VAAYLLAVL GN+SPS+ DL  IL SVGCE+D++++ELLL+ + GKDIT+LIA+GREK ASVP GGG  VAVA+     GG AAPAAEAKKEEKVEE
Subjt:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPAAEAKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

P51407 60S acidic ribosomal protein P2-13.7e-3673.91Show/hide
Query:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVAS-VGGGGGGAAAPAAEAKKEEKVE
        MK+VAA+LLAVL G +SP++ D+KDILGSVG E +D +IELLL  VKGKD+ +LIA+GREKLASVPSGGG  VAVAS   GGGGG  APAAE+KKEEK E
Subjt:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVAS-VGGGGGGAAAPAAEAKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

Q9LXM8 60S acidic ribosomal protein P2-49.4e-3269.3Show/hide
Query:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPAAEAKKEEKVEE
        MK+ AA+LLAVLGGN++PS+ ++KDI+G+VG ++D + IELLL  V GKDI +LIASGREKLASVPSGGG AV+ A+   GGGGAAAPA   KKE K EE
Subjt:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPAAEAKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLF+
Subjt:  KEESDDDMGFSLFD

Q9SLF7 60S acidic ribosomal protein P2-22.4e-3573.91Show/hide
Query:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVAS-VGGGGGGAAAPAAEAKKEEKVE
        MK+VAAYLLAVL G +SP+S D+K ILGSVG E +D +IELLL  VKGKD+ +LIA+GREKLASVPSGGG  VAVAS   GGGGG  A AAE+KKEEK E
Subjt:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVAS-VGGGGGGAAAPAAEAKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

Arabidopsis top hitse value%identityAlignment
AT2G27710.1 60S acidic ribosomal protein family1.7e-3673.91Show/hide
Query:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVAS-VGGGGGGAAAPAAEAKKEEKVE
        MK+VAAYLLAVL G +SP+S D+K ILGSVG E +D +IELLL  VKGKD+ +LIA+GREKLASVPSGGG  VAVAS   GGGGG  A AAE+KKEEK E
Subjt:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVAS-VGGGGGGAAAPAAEAKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT2G27710.2 60S acidic ribosomal protein family1.7e-3673.91Show/hide
Query:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVAS-VGGGGGGAAAPAAEAKKEEKVE
        MK+VAAYLLAVL G +SP+S D+K ILGSVG E +D +IELLL  VKGKD+ +LIA+GREKLASVPSGGG  VAVAS   GGGGG  A AAE+KKEEK E
Subjt:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVAS-VGGGGGGAAAPAAEAKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT2G27710.3 60S acidic ribosomal protein family1.7e-3673.91Show/hide
Query:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVAS-VGGGGGGAAAPAAEAKKEEKVE
        MK+VAAYLLAVL G +SP+S D+K ILGSVG E +D +IELLL  VKGKD+ +LIA+GREKLASVPSGGG  VAVAS   GGGGG  A AAE+KKEEK E
Subjt:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVAS-VGGGGGGAAAPAAEAKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT2G27720.1 60S acidic ribosomal protein family2.6e-3773.91Show/hide
Query:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVAS-VGGGGGGAAAPAAEAKKEEKVE
        MK+VAA+LLAVL G +SP++ D+KDILGSVG E +D +IELLL  VKGKD+ +LIA+GREKLASVPSGGG  VAVAS   GGGGG  APAAE+KKEEK E
Subjt:  MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVAS-VGGGGGGAAAPAAEAKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT2G27720.3 60S acidic ribosomal protein family1.2e-3466.93Show/hide
Query:  MKIVAAYLLAVLGGNSSPSSKDLKDILGS------------VGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVAS-VGGGGGGAAA
        MK+VAA+LLAVL G +SP++ D+KDILGS            VG E +D +IELLL  VKGKD+ +LIA+GREKLASVPSGGG  VAVAS   GGGGG  A
Subjt:  MKIVAAYLLAVLGGNSSPSSKDLKDILGS------------VGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVAS-VGGGGGGAAA

Query:  PAAEAKKEEKVEEKEESDDDMGFSLFD
        PAAE+KKEEK EEKEESDDDMGFSLF+
Subjt:  PAAEAKKEEKVEEKEESDDDMGFSLFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATCGTAGCTGCATATTTGCTTGCCGTTTTGGGAGGCAATTCCTCCCCTTCTTCCAAGGATTTGAAGGATATTCTTGGATCTGTTGGATGTGAAATTGATGACGA
CAGAATCGAGCTTCTGTTGGCTAATGTGAAGGGCAAGGATATTACTGATCTTATTGCATCTGGAAGAGAAAAACTAGCATCTGTTCCTTCGGGTGGAGGTGCTGCCGTGG
CTGTTGCCTCTGTGGGAGGCGGTGGAGGTGGTGCTGCTGCTCCAGCTGCAGAGGCAAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCCGACGATGATATGGGATTC
AGTCTCTTCGATTAA
mRNA sequenceShow/hide mRNA sequence
ATATAAAGTAATAAGAACGCTGCAATAAAATTTACAGAACCCTAATCAGACTCTGTGTATTTTTTGCGATTTGCTTTTTCTGCGAAGGATGAAGATCGTAGCTGCATATT
TGCTTGCCGTTTTGGGAGGCAATTCCTCCCCTTCTTCCAAGGATTTGAAGGATATTCTTGGATCTGTTGGATGTGAAATTGATGACGACAGAATCGAGCTTCTGTTGGCT
AATGTGAAGGGCAAGGATATTACTGATCTTATTGCATCTGGAAGAGAAAAACTAGCATCTGTTCCTTCGGGTGGAGGTGCTGCCGTGGCTGTTGCCTCTGTGGGAGGCGG
TGGAGGTGGTGCTGCTGCTCCAGCTGCAGAGGCAAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCCGACGATGATATGGGATTCAGTCTCTTCGATTAAGTTTAAT
GGCAAAGTTGAATGTTATTCAGAGATTCTTCAATGTTTTAGGTTGGAATTTTTGTTTTTCTCATGTAGAATTTTAACGTCATCGTGGTGTTATTTATTATGATCCAAATG
TTATATTTCTTTTCGGTTGATGAATTTCGTCGTAATTTTTTGATGGTTTTAAAATATCTGTTTCATTACTATATATGAAGAGTAGTTACAGCAATTTGACGAGGCAGGAT
CGTTTTGATATGAGGAAAAACTTCCCTACTCATAGAGATGTAGGGGAGTTCTACAATTTTACTATGAAGCTTCATAGGAGCTACATTTTTTTAGTACTCATTGGGGGAAG
GGATAATTCTGATTCTTGGGATCAAATCTGTGATGCCGGTATTTAACTGGT
Protein sequenceShow/hide protein sequence
MKIVAAYLLAVLGGNSSPSSKDLKDILGSVGCEIDDDRIELLLANVKGKDITDLIASGREKLASVPSGGGAAVAVASVGGGGGGAAAPAAEAKKEEKVEEKEESDDDMGF
SLFD