; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0000384 (gene) of Chayote v1 genome

Gene IDSed0000384
OrganismSechium edule (Chayote v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG02:26358358..26358714
RNA-Seq ExpressionSed0000384
SyntenySed0000384
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]2.9e-3367.8Show/hide
Query:  MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYT
        MAE ERK+  ++K ++ERD EIA LK QMQ RETA SSQ+   +V+D+GKNV+ E QPQQ STSVASLSVQQL + I N IRAQ GGP QTSF+Y KPYT
Subjt:  MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYT

Query:  KRIDNMKMLAGYQPPKFQ
        KRIDN++M  GYQPPKFQ
Subjt:  KRIDNMKMLAGYQPPKFQ

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]1.1e-3266.95Show/hide
Query:  MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYT
        MAE ERK+  ++K ++ERD EIA LK QMQ RETA SSQ+   +V+D+GKNV+ E QPQQ STSVASLSVQQL + I + IRAQ GGP QTSF+Y KPYT
Subjt:  MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYT

Query:  KRIDNMKMLAGYQPPKFQ
        KRIDN++M  GYQPPKFQ
Subjt:  KRIDNMKMLAGYQPPKFQ

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.1e-3266.95Show/hide
Query:  MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYT
        MAE ERK+  ++K ++ERD EIA LK QMQ RETA SSQ+   +V+D+GKNV+ E QPQQ STSVASLSVQQL + I + IRAQ GGP QTSF+Y KPYT
Subjt:  MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYT

Query:  KRIDNMKMLAGYQPPKFQ
        KRIDN++M  GYQPPKFQ
Subjt:  KRIDNMKMLAGYQPPKFQ

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.1e-3266.95Show/hide
Query:  MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYT
        MAE ERK+  ++K ++ERD EIA LK QMQ RETA SSQ+   +V+D+GKNV+ E QPQQ STSVASLSVQQL + I + IRAQ GGP QTSF+Y KPYT
Subjt:  MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYT

Query:  KRIDNMKMLAGYQPPKFQ
        KRIDN++M  GYQPPKFQ
Subjt:  KRIDNMKMLAGYQPPKFQ

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]2.9e-3367.8Show/hide
Query:  MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYT
        MAE ERK+  ++K ++ERD EIA LK QMQ RETA SSQ+   +V+D+GKNV+ E QPQQ STSVASLSVQQL + I N IRAQ GGP QTSF+Y KPYT
Subjt:  MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYT

Query:  KRIDNMKMLAGYQPPKFQ
        KRIDN++M  GYQPPKFQ
Subjt:  KRIDNMKMLAGYQPPKFQ

TrEMBL top hitse value%identityAlignment
A0A5A7SY18 Ty3-gypsy retrotransposon protein6.6e-3164.41Show/hide
Query:  MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYT
        M E ERK+  ++K +EERD EIA LK+QM+ RET  SSQ+   +  D+GKNV+ E QPQQ S SVASLSVQQL + I N IRAQ GG  QTSF+Y KPYT
Subjt:  MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYT

Query:  KRIDNMKMLAGYQPPKFQ
        KRIDN +ML GYQPPKFQ
Subjt:  KRIDNMKMLAGYQPPKFQ

A0A5A7TC87 Ty3-gypsy retrotransposon protein2.5e-3063.56Show/hide
Query:  MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYT
        M E E+K+  ++K +EERD EIA LK+QM+  ETA SS++   +  D+GKNV+ E QPQQ S SVASLSVQQL + IVN IRAQ GGP QTSF+Y KPYT
Subjt:  MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYT

Query:  KRIDNMKMLAGYQPPKFQ
        KRIDN++M  GYQPPKFQ
Subjt:  KRIDNMKMLAGYQPPKFQ

A0A5A7U2G2 Ty3-gypsy retrotransposon protein1.9e-3063.56Show/hide
Query:  MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYT
        MAE ERK+  ++K +EERD  I  L+ QM+ RETA SSQ+   +  D+GKNV+ E QPQQ S SVASLSVQQL + I N IRAQ GGP QTSF+Y KPYT
Subjt:  MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYT

Query:  KRIDNMKMLAGYQPPKFQ
        KRIDN++M  GYQPPKFQ
Subjt:  KRIDNMKMLAGYQPPKFQ

A0A5D3DIN4 Ty3-gypsy retrotransposon protein2.5e-3063.56Show/hide
Query:  MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYT
        M E E+K+  ++K +EERD EIA LK+QM+  ETA SS++   +  D+GKNV+ E QPQQ S SVASLSVQQL + IVN IRAQ GGP QTSF+Y KPYT
Subjt:  MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYT

Query:  KRIDNMKMLAGYQPPKFQ
        KRIDN++M  GYQPPKFQ
Subjt:  KRIDNMKMLAGYQPPKFQ

A0A5D3DXI6 Ty3-gypsy retrotransposon protein1.9e-3063.56Show/hide
Query:  MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYT
        MAE ERK+  ++K +EERD  I  L+ QM+ RETA SSQ+   +  D+GKNV+ E QPQQ S SVASLSVQQL + I N IRAQ GGP QTSF+Y KPYT
Subjt:  MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYT

Query:  KRIDNMKMLAGYQPPKFQ
        KRIDN++M  GYQPPKFQ
Subjt:  KRIDNMKMLAGYQPPKFQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAGTTTGAAAGAAAGCTCGAACAAATGATTAAAACAATTGAGGAAAGAGACTTAGAGATCGCTTACCTAAAAAATCAGATGCAAAATCGAGAGACAGCTCCATC
AAGCCAGAGCCAAAATGAGCGAGTTAATGACCAAGGGAAGAACGTTCTCTTAGAAGGACAACCACAACAACACTCAACTTCGGTCGCTTCGTTGTCCGTCCAACAACTGC
ACGAAACGATCGTAAACAGAATTAGAGCTCAAGGTGGTGGGCCCGTCCAAACTTCTTTTTTGTACTTCAAACCATACACAAAGAGAATAGACAACATGAAAATGCTTGCA
GGATACCAGCCACCTAAGTTCCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAGTTTGAAAGAAAGCTCGAACAAATGATTAAAACAATTGAGGAAAGAGACTTAGAGATCGCTTACCTAAAAAATCAGATGCAAAATCGAGAGACAGCTCCATC
AAGCCAGAGCCAAAATGAGCGAGTTAATGACCAAGGGAAGAACGTTCTCTTAGAAGGACAACCACAACAACACTCAACTTCGGTCGCTTCGTTGTCCGTCCAACAACTGC
ACGAAACGATCGTAAACAGAATTAGAGCTCAAGGTGGTGGGCCCGTCCAAACTTCTTTTTTGTACTTCAAACCATACACAAAGAGAATAGACAACATGAAAATGCTTGCA
GGATACCAGCCACCTAAGTTCCAATAG
Protein sequenceShow/hide protein sequence
MAEFERKLEQMIKTIEERDLEIAYLKNQMQNRETAPSSQSQNERVNDQGKNVLLEGQPQQHSTSVASLSVQQLHETIVNRIRAQGGGPVQTSFLYFKPYTKRIDNMKMLA
GYQPPKFQ