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Sed0000414 (gene) of Chayote v1 genome

Gene IDSed0000414
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG03:42975129..42975353
RNA-Seq ExpressionSed0000414
SyntenySed0000414
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_017239248.1 PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic-like [Daucus carota subsp. sativus]5.2e-0438.81Show/hide
Query:  VESDSQVVIQLLNTNMSCRNELGALVDEIKLLVSRFVCPLFTWCKRESNSLVHSLAKLAETSTEDLV
        + SDS +++Q LN +  C NELG L+D+IK+LV+ F   + T   R+ N   H+L+K A    ++L+
Subjt:  VESDSQVVIQLLNTNMSCRNELGALVDEIKLLVSRFVCPLFTWCKRESNSLVHSLAKLAETSTEDLV
TrEMBL top hitse value%identityAlignment
A0A0J8BAU9 Uncharacterized protein5.6e-0435.62Show/hide
Query:  GCDNIQVESDSQVVIQLLNTNMSCRNELGALVDEIKLLVSRFVCPLFTWCKRESNSLVHSLAKLAETSTEDLV
        G  N+ +ESD+QV+I  +N+ +  R ++ A+++++  LV  F    F++C RE N + H LAK A ++  D V
Subjt:  GCDNIQVESDSQVVIQLLNTNMSCRNELGALVDEIKLLVSRFVCPLFTWCKRESNSLVHSLAKLAETSTEDLV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTGCGATAACATCCAGGTGGAATCTGACTCTCAAGTGGTTATTCAATTATTAAATACTAACATGTCTTGCAGAAATGAGTTGGGTGCCTTGGTGGATGAGATAAA
GCTTTTAGTAAGTCGATTTGTATGTCCGTTGTTTACTTGGTGCAAAAGGGAGTCTAACAGCTTGGTCCACTCGTTGGCCAAGTTAGCGGAAACGTCGACTGAAGATTTAG
TTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTGCGATAACATCCAGGTGGAATCTGACTCTCAAGTGGTTATTCAATTATTAAATACTAACATGTCTTGCAGAAATGAGTTGGGTGCCTTGGTGGATGAGATAAA
GCTTTTAGTAAGTCGATTTGTATGTCCGTTGTTTACTTGGTGCAAAAGGGAGTCTAACAGCTTGGTCCACTCGTTGGCCAAGTTAGCGGAAACGTCGACTGAAGATTTAG
TTTGA
Protein sequenceShow/hide protein sequence
MGCDNIQVESDSQVVIQLLNTNMSCRNELGALVDEIKLLVSRFVCPLFTWCKRESNSLVHSLAKLAETSTEDLV