CuGenDBv2

Gene ID	Sed0000488
Organism	Sechium edule (Chayote v1)
Description	Transmembrane protein
Genome location	LG12:3351503..3352223
RNA-Seq Expression	Sed0000488
Synteny	Sed0000488
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7029126.1 hypothetical protein SDJN02_10311, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-66

81.76

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Query:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRL----RPHPLIAKWLPSPPTRLQVDSALRAVNR----CRESETLG
        MGISASKRVKNSL+NSPDFDSAC++TFSHCL LTQHAY  VFPYQLC AADHLHRL    RPHPLIAKWLPSPPTR QVDSALRAVNR      + ETLG
Subjt:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRL----RPHPLIAKWLPSPPTRLQVDSALRAVNR----CRESETLG

Query:  PIRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG
        PIRFKRWA+ELF EAV + V KEVM RVPVGIAGIAGIGAV+RSGKDLVGT+VAVYALGVA SMYL LSG
Subjt:  PIRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG

XP_022932745.1 uncharacterized protein LOC111439202 [Cucurbita moschata]

2.7e-66

81.18

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Query:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRL----RPHPLIAKWLPSPPTRLQVDSALRAVNR----CRESETLG
        MGISASKRV+NSL+NSPDFDSAC++TFSHCL LTQHAY  VFPYQLC AADHLHRL    RPHPLIAKWLPSPPTR QVDSALRAVNR      + ETLG
Subjt:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRL----RPHPLIAKWLPSPPTRLQVDSALRAVNR----CRESETLG

Query:  PIRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG
        PIRFKRWA+ELF EAV + V KEVM RVPVGIAGIAGIGAV+RSGKDLVGT+VAVYALGVA SMYL LSG
Subjt:  PIRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG

XP_022972117.1 uncharacterized protein LOC111470752 [Cucurbita maxima]

1.0e-65

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Query:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRL----RPHPLIAKWLPSPPTRLQVDSALRAVNR----CRESETLG
        MGISASKRVKNSL+NSPDFDSAC++TFSHCL LTQHAY  VFPYQLC AADHLHRL    RPHPLI+KWLPSPPTRLQVDSAL+AVNR      + ETLG
Subjt:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRL----RPHPLIAKWLPSPPTRLQVDSALRAVNR----CRESETLG

Query:  PIRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG
        PIRFK WA+ELF EAV + V KEVM RVPVGIAGIAGIGAV+RSGKDLVG++VAVYALGVA SMYL LSG
Subjt:  PIRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG

XP_023539875.1 uncharacterized protein LOC111800422 [Cucurbita pepo subsp. pepo]

2.1e-66

80.59

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Query:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRL----RPHPLIAKWLPSPPTRLQVDSALRAVNR----CRESETLG
        MGISASKRVKNSL+NSPDFDSAC++TFSHCL LTQHAY  VFPYQLC AADHLHRL    RPHPLI+KWLPSPPTR QVDSALRAVNR      + ETLG
Subjt:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRL----RPHPLIAKWLPSPPTRLQVDSALRAVNR----CRESETLG

Query:  PIRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG
        PIRFKRWA+ELF EAV + V KEVM RVPVGIAGIAGIGAV+RSGKDLVGT++AVYALGVA SMYL LSG
Subjt:  PIRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG

XP_038878178.1 uncharacterized protein LOC120070324 [Benincasa hispida]

1.9e-67

82.84

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Query:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRL----RPHPLIAKWLPSPPTRLQVDSALRAVNR---CRESETLGP
        MGISASKRV+NSLTNS +FD ACN+TFSHCLALTQHAY  VFPYQLCAAADHLH L    RPHPLIA WLPSPPTRLQVDSALRAVNR    RE ETLGP
Subjt:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRL----RPHPLIAKWLPSPPTRLQVDSALRAVNR---CRESETLGP

Query:  IRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG
        IRFK WA+ELF EAVA+ VGK+VM+RVPVGIAGIAGIGAV+RSGKD+VGTVVAVYALGVA S+YLSLSG
Subjt:  IRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KVZ1 Uncharacterized protein

1.6e-64

79.29

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Query:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRL----RPHPLIAKWLPSPPTRLQVDSALRAVNR---CRESETLGP
        MGISASKRV+NSLTNS +FDSACN+TFSHCLALTQHAY+ VFPYQLC AADHLH L    +PHPLI  WLPSPPTRLQVDSALRAVNR    RE E LG 
Subjt:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRL----RPHPLIAKWLPSPPTRLQVDSALRAVNR---CRESETLGP

Query:  IRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG
        I F RWA+ELF EAV + VGK+VM+RVPVGIAGIAGIGAV+RSGKD+VGTVVAVYALGVA S+YLSLSG
Subjt:  IRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG

A0A1S3BXX1 uncharacterized protein LOC103494601

3.3e-65

78.82

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Query:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRL----RPHPLIAKWLPSPPTRLQVDSALRAVNR----CRESETLG
        MG+SASKRV+NSLTNSP+FDSACN+TFSHCLALTQHAY+ VFPYQLC AADHLH L    +PHPLI  WLPSPPTRLQVDSALRAVNR    C E ETLG
Subjt:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRL----RPHPLIAKWLPSPPTRLQVDSALRAVNR----CRESETLG

Query:  PIRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG
         IRF+RWA+ELF EAV + VGK+VM+RVP+GIAGIAGIGAV+RSGKD+VG VVAVYALGVA S+YLSLSG
Subjt:  PIRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG

A0A5D3D2N6 Uncharacterized protein

3.3e-65

78.82

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Query:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRL----RPHPLIAKWLPSPPTRLQVDSALRAVNR----CRESETLG
        MG+SASKRV+NSLTNSP+FDSACN+TFSHCLALTQHAY+ VFPYQLC AADHLH L    +PHPLI  WLPSPPTRLQVDSALRAVNR    C E ETLG
Subjt:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRL----RPHPLIAKWLPSPPTRLQVDSALRAVNR----CRESETLG

Query:  PIRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG
         IRF+RWA+ELF EAV + VGK+VM+RVP+GIAGIAGIGAV+RSGKD+VG VVAVYALGVA S+YLSLSG
Subjt:  PIRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG

A0A6J1F2Z4 uncharacterized protein LOC111439202

1.3e-66

81.18

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Query:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRL----RPHPLIAKWLPSPPTRLQVDSALRAVNR----CRESETLG
        MGISASKRV+NSL+NSPDFDSAC++TFSHCL LTQHAY  VFPYQLC AADHLHRL    RPHPLIAKWLPSPPTR QVDSALRAVNR      + ETLG
Subjt:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRL----RPHPLIAKWLPSPPTRLQVDSALRAVNR----CRESETLG

Query:  PIRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG
        PIRFKRWA+ELF EAV + V KEVM RVPVGIAGIAGIGAV+RSGKDLVGT+VAVYALGVA SMYL LSG
Subjt:  PIRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG

A0A6J1I3X0 uncharacterized protein LOC111470752

5.1e-66

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Query:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRL----RPHPLIAKWLPSPPTRLQVDSALRAVNR----CRESETLG
        MGISASKRVKNSL+NSPDFDSAC++TFSHCL LTQHAY  VFPYQLC AADHLHRL    RPHPLI+KWLPSPPTRLQVDSAL+AVNR      + ETLG
Subjt:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRL----RPHPLIAKWLPSPPTRLQVDSALRAVNR----CRESETLG

Query:  PIRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG
        PIRFK WA+ELF EAV + V KEVM RVPVGIAGIAGIGAV+RSGKDLVG++VAVYALGVA SMYL LSG
Subjt:  PIRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G43540.1 unknown protein

3.3e-41

53.85

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Query:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHR----LRPHPLIAKWLPSPPTRLQVDSALRA----VNRCRESETLG
        MGIS SKRV   L+NSP+FDSAC++ +   L+L QHA+  V PYQL +AA H+HR    LR  PLI +WL SPP++ QVDSALR     V    E E LG
Subjt:  MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHR----LRPHPLIAKWLPSPPTRLQVDSALRA----VNRCRESETLG

Query:  PIRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLS
           FK+WAVE+F EAV     K +  R+P+GI GI GIGAV+RSG++L+G  + VYA+GVA S++LSL+
Subjt:  PIRFKRWAVELFGEAVAEKVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGAATATCAGCCTCAAAACGAGTGAAGAACTCACTTACAAACTCGCCCGATTTCGACTCAGCCTGCAACGCAACCTTCTCCCACTGCCTCGCCCTAACTCAGCACGC
ATACCACGCCGTTTTCCCCTACCAACTCTGCGCCGCCGCCGACCACCTCCACCGCCTCCGGCCACATCCACTCATCGCGAAGTGGCTCCCGTCTCCCCCGACTCGCCTGC
AGGTCGACTCAGCGCTCCGAGCCGTGAATCGCTGCCGTGAAAGCGAAACCCTGGGCCCGATCCGGTTCAAGCGGTGGGCGGTGGAGCTGTTCGGAGAGGCTGTGGCGGAG
AAGGTCGGGAAAGAGGTGATGATTCGAGTTCCGGTCGGAATCGCCGGGATCGCCGGAATCGGCGCCGTGAGTCGGTCGGGGAAGGATCTGGTTGGGACGGTGGTTGCTGT
GTACGCGCTTGGCGTTGCCATTTCGATGTACTTGAGTTTGTCTGGATAG

mRNA sequence

Show/hide mRNA sequence

TGATTCGTCGCAAATATTAAAGAACAAGCAAGTTGAGAGAACACGAAAATGGGAATATCAGCCTCAAAACGAGTGAAGAACTCACTTACAAACTCGCCCGATTTCGACTC
AGCCTGCAACGCAACCTTCTCCCACTGCCTCGCCCTAACTCAGCACGCATACCACGCCGTTTTCCCCTACCAACTCTGCGCCGCCGCCGACCACCTCCACCGCCTCCGGC
CACATCCACTCATCGCGAAGTGGCTCCCGTCTCCCCCGACTCGCCTGCAGGTCGACTCAGCGCTCCGAGCCGTGAATCGCTGCCGTGAAAGCGAAACCCTGGGCCCGATC
CGGTTCAAGCGGTGGGCGGTGGAGCTGTTCGGAGAGGCTGTGGCGGAGAAGGTCGGGAAAGAGGTGATGATTCGAGTTCCGGTCGGAATCGCCGGGATCGCCGGAATCGG
CGCCGTGAGTCGGTCGGGGAAGGATCTGGTTGGGACGGTGGTTGCTGTGTACGCGCTTGGCGTTGCCATTTCGATGTACTTGAGTTTGTCTGGATAGATACCCAACGGAG
CGGTGGATATTATTTGTAAAGATAGTTTAGTCATTATACTTTAATGTTTATATTTGGTTATATGGATGGATAATATTTTATTTCAACTCTACGTATTTGTAATATTTATT
GAAAATTATAAATATCATTTATACATATTAATTGAAGATCATATATTATTTCGATAACTAA

Protein sequence

Show/hide protein sequence

MGISASKRVKNSLTNSPDFDSACNATFSHCLALTQHAYHAVFPYQLCAAADHLHRLRPHPLIAKWLPSPPTRLQVDSALRAVNRCRESETLGPIRFKRWAVELFGEAVAE
KVGKEVMIRVPVGIAGIAGIGAVSRSGKDLVGTVVAVYALGVAISMYLSLSG

Sed0000488 (gene) of Chayote v1 genome