CuGenDBv2

Gene ID	Sed0000529
Organism	Sechium edule (Chayote v1)
Description	Pol protein
Genome location	LG07:27373221..27373865
RNA-Seq Expression	Sed0000529
Synteny	Sed0000529
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR016197 - Chromo-like domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0050197.1 pol protein [Cucumis melo var. makuwa]

7.0e-86

77.36

Show/hide

Query:  MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFG
        MEFAYNNSYQ+TI MAPFEALYGK CRSPV W EVG++++LGPEL+Q TN A+QKIRARMLTAQ+RQKSYA VRR+DL+FEVG  VFLKVAPM+GVLRF 
Subjt:  MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFG

Query:  KRGKLSPRFVGLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSS
        K+GKLSPRFVG FEILERIG VAYRLALPPSLSAVH+VFHVSMLR+YV D +H+VDFEPLQ++E LS+EE+PV ILA E K LR+REI LVKV WR+   
Subjt:  KRGKLSPRFVGLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSS

Query:  EEATWEREDEMR
        EEATWERE++MR
Subjt:  EEATWEREDEMR

KAA0056504.1 pol protein [Cucumis melo var. makuwa]

7.0e-86

76.42

Show/hide

Query:  MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFG
        MEFAYNNSYQ+TI MAPFEALYGK CRSPV W EVG+++++GPEL+Q TN A+QKIR+RM TAQSRQKSYA VRR+DL+FE+G  VFLKVAPMRGVLRF 
Subjt:  MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFG

Query:  KRGKLSPRFVGLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSS
        +RGKLSPRFVG FEILERIG VAYRLALPPSLS VH VFHVSMLR+YVPDPSH+VD+EPL+++E LS+ E+PV +LA E KTLRN+EI LVKV WR+   
Subjt:  KRGKLSPRFVGLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSS

Query:  EEATWEREDEMR
        EEATWERED+MR
Subjt:  EEATWEREDEMR

KAA0056702.1 pol protein [Cucumis melo var. makuwa]

3.2e-86

76.89

Show/hide

Query:  MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFG
        MEFAYNNSYQ+TI MAPFEALYGK CRSPV W EVG+++++GPEL+Q TN A+QKIR+RM TAQSRQKSYA VRR+DL+FEVG  VFLKVAPMRGVLRF 
Subjt:  MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFG

Query:  KRGKLSPRFVGLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSS
        +RGKLSPRFVG FEILERIG VAYRLALPPSLS VH VFHVSMLR+YVPDPSH+VD+EPL+++E LS+ E+PV +LA E KTLRN+EI LVKV WR+   
Subjt:  KRGKLSPRFVGLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSS

Query:  EEATWEREDEMR
        EEATWERED+MR
Subjt:  EEATWEREDEMR

KAA0060848.1 pol protein [Cucumis melo var. makuwa]

4.1e-86

76.42

Show/hide

Query:  MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFG
        MEFAYNNSYQ+TI MAPFEALYGK CRSPV W+EVG+++++GPEL+Q TN A+QKIR+RM TAQSRQKSYA VRR+DL+FEVG  VFLKVAPMRGVLRF 
Subjt:  MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFG

Query:  KRGKLSPRFVGLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSS
        KRGKLSPRFVG FEILERIG VAYRLALPPSL+  H VFHVSMLR+YVPDPSH+VD+EPL+++E +S+ E+PV ILA E KTLRN+EI LVKV WR+   
Subjt:  KRGKLSPRFVGLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSS

Query:  EEATWEREDEMR
        EEATWERED+MR
Subjt:  EEATWEREDEMR

TYJ98213.1 pol protein [Cucumis melo var. makuwa]

7.0e-86

77.36

Show/hide

Query:  MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFG
        MEFAYNNSYQ+TI MAPFEALYGK CRSPV W EVG++++LGPEL+Q TN A+QKIRARMLTAQ+RQKSYA VRR+DL+FEVG  VFLKVAPM+GVLRF 
Subjt:  MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFG

Query:  KRGKLSPRFVGLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSS
        K+GKLSPRFVG FEILERIG VAYRLALPPSLSAVH+VFHVSMLR+YV D +H+VDFEPLQ++E LS+EE+PV ILA E K LR+REI LVKV WR+   
Subjt:  KRGKLSPRFVGLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSS

Query:  EEATWEREDEMR
        EEATWERE++MR
Subjt:  EEATWEREDEMR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U747 Pol protein

3.4e-86

77.36

Show/hide

Query:  MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFG
        MEFAYNNSYQ+TI MAPFEALYGK CRSPV W EVG++++LGPEL+Q TN A+QKIRARMLTAQ+RQKSYA VRR+DL+FEVG  VFLKVAPM+GVLRF 
Subjt:  MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFG

Query:  KRGKLSPRFVGLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSS
        K+GKLSPRFVG FEILERIG VAYRLALPPSLSAVH+VFHVSMLR+YV D +H+VDFEPLQ++E LS+EE+PV ILA E K LR+REI LVKV WR+   
Subjt:  KRGKLSPRFVGLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSS

Query:  EEATWEREDEMR
        EEATWERE++MR
Subjt:  EEATWEREDEMR

A0A5A7ULI8 Pol protein

1.5e-86

76.89

Show/hide

Query:  MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFG
        MEFAYNNSYQ+TI MAPFEALYGK CRSPV W EVG+++++GPEL+Q TN A+QKIR+RM TAQSRQKSYA VRR+DL+FEVG  VFLKVAPMRGVLRF 
Subjt:  MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFG

Query:  KRGKLSPRFVGLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSS
        +RGKLSPRFVG FEILERIG VAYRLALPPSLS VH VFHVSMLR+YVPDPSH+VD+EPL+++E LS+ E+PV +LA E KTLRN+EI LVKV WR+   
Subjt:  KRGKLSPRFVGLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSS

Query:  EEATWEREDEMR
        EEATWERED+MR
Subjt:  EEATWEREDEMR

A0A5A7UMT8 Pol protein

3.4e-86

76.42

Show/hide

Query:  MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFG
        MEFAYNNSYQ+TI MAPFEALYGK CRSPV W EVG+++++GPEL+Q TN A+QKIR+RM TAQSRQKSYA VRR+DL+FE+G  VFLKVAPMRGVLRF 
Subjt:  MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFG

Query:  KRGKLSPRFVGLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSS
        +RGKLSPRFVG FEILERIG VAYRLALPPSLS VH VFHVSMLR+YVPDPSH+VD+EPL+++E LS+ E+PV +LA E KTLRN+EI LVKV WR+   
Subjt:  KRGKLSPRFVGLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSS

Query:  EEATWEREDEMR
        EEATWERED+MR
Subjt:  EEATWEREDEMR

A0A5A7UZZ4 Pol protein

2.0e-86

76.42

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Query:  MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFG
        MEFAYNNSYQ+TI MAPFEALYGK CRSPV W+EVG+++++GPEL+Q TN A+QKIR+RM TAQSRQKSYA VRR+DL+FEVG  VFLKVAPMRGVLRF 
Subjt:  MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFG

Query:  KRGKLSPRFVGLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSS
        KRGKLSPRFVG FEILERIG VAYRLALPPSL+  H VFHVSMLR+YVPDPSH+VD+EPL+++E +S+ E+PV ILA E KTLRN+EI LVKV WR+   
Subjt:  KRGKLSPRFVGLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSS

Query:  EEATWEREDEMR
        EEATWERED+MR
Subjt:  EEATWEREDEMR

A0A5D3BG43 Pol protein

3.4e-86

77.36

Show/hide

Query:  MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFG
        MEFAYNNSYQ+TI MAPFEALYGK CRSPV W EVG++++LGPEL+Q TN A+QKIRARMLTAQ+RQKSYA VRR+DL+FEVG  VFLKVAPM+GVLRF 
Subjt:  MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFG

Query:  KRGKLSPRFVGLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSS
        K+GKLSPRFVG FEILERIG VAYRLALPPSLSAVH+VFHVSMLR+YV D +H+VDFEPLQ++E LS+EE+PV ILA E K LR+REI LVKV WR+   
Subjt:  KRGKLSPRFVGLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSS

Query:  EEATWEREDEMR
        EEATWERE++MR
Subjt:  EEATWEREDEMR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAGTTTGCATATAACAACAGTTATCAGTCGACGATTCAGATGGCTCCCTTCGAGGCTTTGTATGGCAAGCGTTGTCGATCTCCTGTGTTCTGGGAAGAGGTTGGTGA
TAGGCAGGTTTTGGGTCCCGAGTTGCTGCAGTTGACCAATGGTGCCGTGCAGAAGATTAGAGCCCGTATGTTGACAGCTCAGAGCAGACAGAAGAGTTATGCCGTTGTTC
GGCGTCGGGATTTGGATTTTGAGGTTGGTCAACATGTTTTCTTGAAGGTCGCACCGATGCGAGGTGTTTTGAGGTTTGGCAAGCGTGGAAAGCTGAGTCCCCGTTTTGTT
GGCCTGTTTGAGATTCTGGAAAGGATCGGCAAGGTTGCTTATAGATTAGCCTTGCCTCCGTCATTGTCGGCAGTGCACAGTGTATTTCATGTATCAATGTTGAGGCAGTA
CGTGCCGGACCCATCGCACATTGTAGATTTTGAGCCTTTGCAGCTGAATGAGAAGTTGAGCTTCGAGGAAAAACCAGTGGGGATTCTTGCTTTTGAGACAAAGACACTGC
GTAATCGTGAAATCCGGCTGGTAAAGGTTCAGTGGAGGAGTCAGAGTTCAGAGGAAGCCACTTGGGAGCGGGAGGATGAGATGAGATTGCATTAA

mRNA sequence

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Protein sequence

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MEFAYNNSYQSTIQMAPFEALYGKRCRSPVFWEEVGDRQVLGPELLQLTNGAVQKIRARMLTAQSRQKSYAVVRRRDLDFEVGQHVFLKVAPMRGVLRFGKRGKLSPRFV
GLFEILERIGKVAYRLALPPSLSAVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEKLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSSEEATWEREDEMRLH

Sed0000529 (gene) of Chayote v1 genome