; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0000544 (gene) of Chayote v1 genome

Gene IDSed0000544
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG09:4838394..4844385
RNA-Seq ExpressionSed0000544
SyntenySed0000544
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038339.1 uncharacterized protein E6C27_scaffold270G002130 [Cucumis melo var. makuwa]1.8e-0746.03Show/hide
Query:  LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVIDIKK
        L ++NP VVL+QE+K+++ D  FIKSLWS  D+ W  ++S G SGG L +W+  +L+V++  K
Subjt:  LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVIDIKK

TYJ97056.1 uncharacterized protein E5676_scaffold506G001240 [Cucumis melo var. makuwa]3.0e-0746.03Show/hide
Query:  LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVIDIKK
        L ++NP VVL+QE+K+++ D  FIKSLWS  D+ W  ++S G SGG L +W+  +L+V++  K
Subjt:  LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVIDIKK

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]5.2e-0743.48Show/hide
Query:  LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVIDIKKGSISET
        ++  NP VV+LQETK   +D   +KSLWSA  + W+ +D+ G + G LI+WNDP L   ++ +G  S T
Subjt:  LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVIDIKKGSISET

XP_031739979.1 uncharacterized protein LOC116403332 [Cucumis sativus]3.0e-0741.79Show/hide
Query:  LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVIDIKKGSIS
        L ++NP VV+LQ++K   ++R  +KS+WS+  V W T+++ G+SGG LI+W + S+ V+D  +G  S
Subjt:  LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVIDIKKGSIS

XP_038880114.1 transcription factor IIIB 90 kDa subunit-like isoform X3 [Benincasa hispida]2.1e-0846.38Show/hide
Query:  NEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVIDIKKGSISETK
        N  N T V+LQ+TKS +ID  FIKS+WS+R++AW  +D+I  +G  LI+WN+ +  V ++ KG +  TK
Subjt:  NEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVIDIKKGSISETK

TrEMBL top hitse value%identityAlignment
A0A2N9GSN1 Reverse transcriptase domain-containing protein6.6e-0837.25Show/hide
Query:  PTKLTKLMKEARKKNNAYREIINLTSNVNYDCS--LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVIDIKKGS
        P K+   +++  KK    RE+ NL S+VNY     L E+   +V LQETK   ID   ++SLW  + V W  +D+I  +GG LIMW+   +  +D++ G 
Subjt:  PTKLTKLMKEARKKNNAYREIINLTSNVNYDCS--LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVIDIKKGS

Query:  IS
         S
Subjt:  IS

A0A5A7TAF5 Uncharacterized protein8.6e-0846.03Show/hide
Query:  LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVIDIKK
        L ++NP VVL+QE+K+++ D  FIKSLWS  D+ W  ++S G SGG L +W+  +L+V++  K
Subjt:  LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVIDIKK

A0A5A7VKI3 DUF4283 domain-containing protein2.5e-0736.78Show/hide
Query:  LHWLTKCFNALLAVNLNHKYFTTTRADDYTIWVEKINNRKRYFVEISKVDNNGRHNKLVVPIGDNRWGWRAFHTLLEGSSQPADLKN
        L WL   F  LL      ++F   R ++Y +WV+K  NRK Y  EI +VD+ GR   ++VP G  + GW  F +LL G    +  +N
Subjt:  LHWLTKCFNALLAVNLNHKYFTTTRADDYTIWVEKINNRKRYFVEISKVDNNGRHNKLVVPIGDNRWGWRAFHTLLEGSSQPADLKN

A0A5D3BDI9 Uncharacterized protein1.5e-0746.03Show/hide
Query:  LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVIDIKK
        L ++NP VVL+QE+K+++ D  FIKSLWS  D+ W  ++S G SGG L +W+  +L+V++  K
Subjt:  LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVIDIKK

A0A7N2M0A0 Kinesin motor domain-containing protein1.5e-0733.33Show/hide
Query:  WLKTMGLGILPLPTKLTKLMKEARKKNNAYREIINLTSNVNYDCS--------------LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSI
        W++        L  K+T   K    K+   RE+ NL S+VNYD                L E+   V+ LQETK  D+DR  + SLWS   V W  +D++
Subjt:  WLKTMGLGILPLPTKLTKLMKEARKKNNAYREIINLTSNVNYDCS--------------LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSI

Query:  GASGGQLIMWNDPSLVVIDIKKGSIS
          +GG L+MW+   L  ++   GS S
Subjt:  GASGGQLIMWNDPSLVVIDIKKGSIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACGCCTACTGCATTGGCTCACCAAATGCTTTAACGCACTCCTTGCCGTTAATCTGAACCACAAGTACTTCACTACGACAAGGGCAGACGATTACACCATCTGGGT
CGAAAAGATCAACAACAGGAAAAGGTATTTTGTCGAGATCTCTAAGGTCGACAATAACGGCAGGCATAACAAACTAGTTGTTCCTATTGGTGACAATAGATGGGGGTGGC
GTGCTTTTCATACTCTCCTAGAAGGCTCTTCACAACCAGCTGATTTAAAGAATGGAGCTGAGAGTAACAGATCAGAGCATTCATCCTCTGCTAATTTCGCTGTTGCAATT
AAAGCCCCGCCATTTAAGAGGGAAGAGGAGATGCTACCATTTAATGAAGAACAGAGGGAAAAGCTTTATAGCTCAACAACCATCTCCTCGTATTTGCCATCAACATTATT
CGGCATCATCCACTGCTCTACGACGAAGAAAAACAAAAGTAAATGGGTTTATCGGAAGATGGACAGAAACAGAGCTCCCTCCCCGGATCTTGTAGATCCATCTATCTTCT
GCCATAGGGTGATGTCCCCAGATAAGCACGATCTTTTCTTTTTGGCGGAATTCAGAGATCCTCCAGCGACCGGAATCCCATCACAGAATCCTCCGACGATCATTGATAGG
GGCGCGAGGTTCGTAGAGCTGACCGAACTAGACTTGTCTGTAACAACATCGAGCCACTCCCCGCAGGAAGAACAGAAACAAACCATTTTCGTTCCTGGAACAAAACTAAC
CACCAACCCACCTATTCTAGCCATCACAGATACCGAAGGCCTATCCTCCCCATACCCATCTTCTCCTTCCCATTCCTTCCCCGAATCAGAAAATCCTTACCATTCCCAAT
CTGAACCAGAACATCCTCACCCTTTGCAGATTGCTTACCCAGCTGAGATTGGCCACTCTTACACTATGAACGACTCCAAGAATTATTATAAGAGGAGTAGAACCAAGCTG
GATCCTAATATTCATCCTTCTGCTCTGTTAGGGGTCATTATTCCTTGGTTGAAAACCATGGGATTGGGTATTCTTCCTCTCCCCACGAAGCTTACTAAACTGATGAAGGA
AGCCAGGAAGAAGAACAATGCTTACAGAGAAATTATCAATCTTACTTCTAATGTGAATTATGATTGCTCTCTTAATGAGTATAATCCTACGGTGGTGCTGCTACAAGAGA
CTAAATCTAAGGACATCGATCGAGGATTTATTAAATCTTTATGGAGTGCTAGAGACGTTGCTTGGACAACAATTGATTCTATTGGAGCATCTGGAGGTCAACTGATTATG
TGGAATGATCCATCCCTTGTTGTAATTGATATAAAAAAAGGATCCATTTCTGAAACCAAAGGAAAGGAAGCCGGAACCAACTACAAAATGAAAGGTATTTGCAGGGAAGG
TTCCAATTTAAGTCATCTAGAGCTTGTACCTGGATTGGCCTTGTCTCCAACTTTGTTATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCACGCCTACTGCATTGGCTCACCAAATGCTTTAACGCACTCCTTGCCGTTAATCTGAACCACAAGTACTTCACTACGACAAGGGCAGACGATTACACCATCTGGGT
CGAAAAGATCAACAACAGGAAAAGGTATTTTGTCGAGATCTCTAAGGTCGACAATAACGGCAGGCATAACAAACTAGTTGTTCCTATTGGTGACAATAGATGGGGGTGGC
GTGCTTTTCATACTCTCCTAGAAGGCTCTTCACAACCAGCTGATTTAAAGAATGGAGCTGAGAGTAACAGATCAGAGCATTCATCCTCTGCTAATTTCGCTGTTGCAATT
AAAGCCCCGCCATTTAAGAGGGAAGAGGAGATGCTACCATTTAATGAAGAACAGAGGGAAAAGCTTTATAGCTCAACAACCATCTCCTCGTATTTGCCATCAACATTATT
CGGCATCATCCACTGCTCTACGACGAAGAAAAACAAAAGTAAATGGGTTTATCGGAAGATGGACAGAAACAGAGCTCCCTCCCCGGATCTTGTAGATCCATCTATCTTCT
GCCATAGGGTGATGTCCCCAGATAAGCACGATCTTTTCTTTTTGGCGGAATTCAGAGATCCTCCAGCGACCGGAATCCCATCACAGAATCCTCCGACGATCATTGATAGG
GGCGCGAGGTTCGTAGAGCTGACCGAACTAGACTTGTCTGTAACAACATCGAGCCACTCCCCGCAGGAAGAACAGAAACAAACCATTTTCGTTCCTGGAACAAAACTAAC
CACCAACCCACCTATTCTAGCCATCACAGATACCGAAGGCCTATCCTCCCCATACCCATCTTCTCCTTCCCATTCCTTCCCCGAATCAGAAAATCCTTACCATTCCCAAT
CTGAACCAGAACATCCTCACCCTTTGCAGATTGCTTACCCAGCTGAGATTGGCCACTCTTACACTATGAACGACTCCAAGAATTATTATAAGAGGAGTAGAACCAAGCTG
GATCCTAATATTCATCCTTCTGCTCTGTTAGGGGTCATTATTCCTTGGTTGAAAACCATGGGATTGGGTATTCTTCCTCTCCCCACGAAGCTTACTAAACTGATGAAGGA
AGCCAGGAAGAAGAACAATGCTTACAGAGAAATTATCAATCTTACTTCTAATGTGAATTATGATTGCTCTCTTAATGAGTATAATCCTACGGTGGTGCTGCTACAAGAGA
CTAAATCTAAGGACATCGATCGAGGATTTATTAAATCTTTATGGAGTGCTAGAGACGTTGCTTGGACAACAATTGATTCTATTGGAGCATCTGGAGGTCAACTGATTATG
TGGAATGATCCATCCCTTGTTGTAATTGATATAAAAAAAGGATCCATTTCTGAAACCAAAGGAAAGGAAGCCGGAACCAACTACAAAATGAAAGGTATTTGCAGGGAAGG
TTCCAATTTAAGTCATCTAGAGCTTGTACCTGGATTGGCCTTGTCTCCAACTTTGTTATTTTGA
Protein sequenceShow/hide protein sequence
MARLLHWLTKCFNALLAVNLNHKYFTTTRADDYTIWVEKINNRKRYFVEISKVDNNGRHNKLVVPIGDNRWGWRAFHTLLEGSSQPADLKNGAESNRSEHSSSANFAVAI
KAPPFKREEEMLPFNEEQREKLYSSTTISSYLPSTLFGIIHCSTTKKNKSKWVYRKMDRNRAPSPDLVDPSIFCHRVMSPDKHDLFFLAEFRDPPATGIPSQNPPTIIDR
GARFVELTELDLSVTTSSHSPQEEQKQTIFVPGTKLTTNPPILAITDTEGLSSPYPSSPSHSFPESENPYHSQSEPEHPHPLQIAYPAEIGHSYTMNDSKNYYKRSRTKL
DPNIHPSALLGVIIPWLKTMGLGILPLPTKLTKLMKEARKKNNAYREIINLTSNVNYDCSLNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIM
WNDPSLVVIDIKKGSISETKGKEAGTNYKMKGICREGSNLSHLELVPGLALSPTLLF