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Sed0000548 (gene) of Chayote v1 genome

Gene IDSed0000548
OrganismSechium edule (Chayote v1)
Descriptionserine, glycine and glutamine-rich protein isoform X2
Genome locationLG14:2033349..2033588
RNA-Seq ExpressionSed0000548
SyntenySed0000548
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAF2285650.1 unnamed protein product [Brassica napus]1.7e-0547.5Show/hide
Query:  GVGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGK---GGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
        G GKG  GG  K      + G  +G+G G G  GK   GGG G MVAPGS G  YISR  FE++P  YF++  G DK  K
Subjt:  GVGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGK---GGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
KAF8089537.1 hypothetical protein N665_0502s0004 [Sinapis alba]6.5e-0553.12Show/hide
Query:  SDSSRNVGVDAGVGVGVGVDGKGGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
        S SS   G   G G G    G GGG G MVAPGS+G  YISR GFE+NP AYF +  G+ +N K
Subjt:  SDSSRNVGVDAGVGVGVGVDGKGGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
XP_022151641.1 LOW QUALITY PROTEIN: keratin, type II cytoskeletal 1-like [Momordica charantia]2.5e-0446.84Show/hide
Query:  MEGVGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGKGGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
        M G GKG  GG           G   G G G    G GG +G+MVAPGS G  YISR GFE+NP  YF +  GA+K+ K
Subjt:  MEGVGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGKGGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
XP_022543335.1 glycine-rich protein DOT1-like [Brassica napus]1.5e-0445Show/hide
Query:  GVGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGK---GGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
        G GKG  GG  K      + G  +G+G G G  GK   GGG G MVAPGS G  YISR  FE++P  YF++  G+ + +K
Subjt:  GVGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGK---GGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
XP_033145609.1 glycine-rich RNA-binding protein GRP1A [Brassica rapa]2.2e-0547.5Show/hide
Query:  GVGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGK---GGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
        G GKG  GG  K      + G  +GVG G G  GK   GGG G MVAPGS G  YISR  FEN+P  YF++  G+ + +K
Subjt:  GVGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGK---GGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
TrEMBL top hitse value%identityAlignment
A0A078GWY3 BnaA04g17630D protein7.1e-0545Show/hide
Query:  GVGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGK---GGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
        G GKG  GG  K      + G  +G+G G G  GK   GGG G MVAPGS G  YISR  FE++P  YF++  G+ + +K
Subjt:  GVGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGK---GGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
A0A397ZN54 Uncharacterized protein7.1e-0545Show/hide
Query:  GVGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGK---GGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
        G GKG  GG  K      + G  +G+G G G  GK   GGG G MVAPGS G  YISR  FE++P  YF++  G+ + +K
Subjt:  GVGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGK---GGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
A0A6J1DFA1 LOW QUALITY PROTEIN: keratin, type II cytoskeletal 1-like1.2e-0446.84Show/hide
Query:  MEGVGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGKGGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
        M G GKG  GG           G   G G G    G GG +G+MVAPGS G  YISR GFE+NP  YF +  GA+K+ K
Subjt:  MEGVGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGKGGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
M4DYP7 Uncharacterized protein7.1e-0545Show/hide
Query:  GVGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGK---GGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
        G GKG  GG  K      + G  +G+G G G  GK   GGG G MVAPGS G  YISR  FE++P  YF++  G+ + +K
Subjt:  GVGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGK---GGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
M4DYQ0 Uncharacterized protein1.1e-0547.5Show/hide
Query:  GVGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGK---GGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
        G GKG  GG  K      + G  +GVG G G  GK   GGG G MVAPGS G  YISR  FEN+P  YF++  G+ + +K
Subjt:  GVGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGK---GGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G61412.1 unknown protein4.1e-0544.74Show/hide
Query:  VGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGKGGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK
        VG G SGG   A   S   G  +G G      G G G G MVAPG+ G  YISR GFE+NP  YF +  G+ ++ K
Subjt:  VGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGKGGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGAGTCGGAAAGGGTAGTAGCGGCGGAGTTGCAAAGGCTAGCGATAGCAGCAGAAATGTTGGTGTCGATGCCGGTGTCGGTGTCGGTGTCGGTGTCGATGGAAA
AGGAGGCGGAAACGGTTTGATGGTTGCACCGGGGAGTGAAGGAAAGGAATATATCTCTCGAGTTGGATTTGAGAATAATCCAGCAGCTTATTTTGAAGACAAGCGTGGAG
CTGATAAAAATGCTAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGAGTCGGAAAGGGTAGTAGCGGCGGAGTTGCAAAGGCTAGCGATAGCAGCAGAAATGTTGGTGTCGATGCCGGTGTCGGTGTCGGTGTCGGTGTCGATGGAAA
AGGAGGCGGAAACGGTTTGATGGTTGCACCGGGGAGTGAAGGAAAGGAATATATCTCTCGAGTTGGATTTGAGAATAATCCAGCAGCTTATTTTGAAGACAAGCGTGGAG
CTGATAAAAATGCTAAGTAG
Protein sequenceShow/hide protein sequence
MEGVGKGSSGGVAKASDSSRNVGVDAGVGVGVGVDGKGGGNGLMVAPGSEGKEYISRVGFENNPAAYFEDKRGADKNAK