; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0000550 (gene) of Chayote v1 genome

Gene IDSed0000550
OrganismSechium edule (Chayote v1)
DescriptionCAP-Gly domain-containing linker protein 1
Genome locationLG12:5132372..5135045
RNA-Seq ExpressionSed0000550
SyntenySed0000550
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134206.1 CAP-Gly domain-containing linker protein 1 [Cucumis sativus]3.2e-4779.17Show/hide
Query:  MATTDS---APALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHEDVT
        MA +DS   +PA  S KKENLTPIGSKITELN+SR ELLNRIQSLKQDLQNWRSKLDTQV+TYRSEL++LKK+LNVEVEHLRTEFQELRTTLQ   EDVT
Subjt:  MATTDS---APALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHEDVT

Query:  TSLRNFGLQDVSVENNETRLQHPVVESSDKEDEDEAKKDGGLKE
        TSLRN GLQDVSV+NNET+ QHP V S DKED DEAKKD   +E
Subjt:  TSLRNFGLQDVSVENNETRLQHPVVESSDKEDEDEAKKDGGLKE

XP_008438878.1 PREDICTED: CAP-Gly domain-containing linker protein 1 isoform X1 [Cucumis melo]6.1e-4678.62Show/hide
Query:  MATTDS---APALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHEDVT
        MA +DS   +PA  S KKENLTPIGSKITELN+SR ELLNRIQSLKQDLQNWRSKLDTQVNTYRSEL++LKK+LNVEVEHLRTEFQELRTTLQ   EDVT
Subjt:  MATTDS---APALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHEDVT

Query:  TSLRNFG-LQDVSVENNETRLQHPVVESSDKEDEDEAKKDGGLKE
        TSLRN G LQDVSV+ NET+ QHP   S DKED DEAKKDG  +E
Subjt:  TSLRNFG-LQDVSVENNETRLQHPVVESSDKEDEDEAKKDGGLKE

XP_008438879.1 PREDICTED: CAP-Gly domain-containing linker protein 1 isoform X2 [Cucumis melo]2.5e-4779.17Show/hide
Query:  MATTDS---APALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHEDVT
        MA +DS   +PA  S KKENLTPIGSKITELN+SR ELLNRIQSLKQDLQNWRSKLDTQVNTYRSEL++LKK+LNVEVEHLRTEFQELRTTLQ   EDVT
Subjt:  MATTDS---APALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHEDVT

Query:  TSLRNFGLQDVSVENNETRLQHPVVESSDKEDEDEAKKDGGLKE
        TSLRN GLQDVSV+ NET+ QHP   S DKED DEAKKDG  +E
Subjt:  TSLRNFGLQDVSVENNETRLQHPVVESSDKEDEDEAKKDGGLKE

XP_023527984.1 CAP-Gly domain-containing linker protein 1-like [Cucurbita pepo subsp. pepo]5.5e-4782.58Show/hide
Query:  SAPALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHEDVTTSLRNFGL
        +APA  S K ENLTPIGSKI+ELN+SR ELLNRIQSLKQDLQNWRSKLDTQVNTYRSEL++LKK+LNVEVEHLRTEFQELRTTLQ   EDVTTSLRN GL
Subjt:  SAPALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHEDVTTSLRNFGL

Query:  QDVSVENNETRLQHPVVESSDKEDEDEAKKDG
        QDVSV+NNETR QHP  E SDKED DEA K+G
Subjt:  QDVSVENNETRLQHPVVESSDKEDEDEAKKDG

XP_038878824.1 CAP-Gly domain-containing linker protein 1 isoform X1 [Benincasa hispida]8.5e-4881.43Show/hide
Query:  ATTDSAPALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHEDVTTSLR
        +T  SAP   S KKENLTPIGSKITELN+SR ELLNRIQSLKQDLQNWRSKLDTQVNTYRSEL++LKK+LNVEVEHLRTEFQELRTTLQ   EDVTTSLR
Subjt:  ATTDSAPALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHEDVTTSLR

Query:  NFGLQDVSVENNETRLQHPVVESSDKEDEDEAKKDGGLKE
        N GLQDVSVE+NE + QHP VESSDKED D+AKKDG  +E
Subjt:  NFGLQDVSVENNETRLQHPVVESSDKEDEDEAKKDGGLKE

TrEMBL top hitse value%identityAlignment
A0A1S3AXE8 CAP-Gly domain-containing linker protein 1 isoform X13.0e-4678.62Show/hide
Query:  MATTDS---APALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHEDVT
        MA +DS   +PA  S KKENLTPIGSKITELN+SR ELLNRIQSLKQDLQNWRSKLDTQVNTYRSEL++LKK+LNVEVEHLRTEFQELRTTLQ   EDVT
Subjt:  MATTDS---APALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHEDVT

Query:  TSLRNFG-LQDVSVENNETRLQHPVVESSDKEDEDEAKKDGGLKE
        TSLRN G LQDVSV+ NET+ QHP   S DKED DEAKKDG  +E
Subjt:  TSLRNFG-LQDVSVENNETRLQHPVVESSDKEDEDEAKKDGGLKE

A0A1S3AY29 CAP-Gly domain-containing linker protein 1 isoform X21.2e-4779.17Show/hide
Query:  MATTDS---APALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHEDVT
        MA +DS   +PA  S KKENLTPIGSKITELN+SR ELLNRIQSLKQDLQNWRSKLDTQVNTYRSEL++LKK+LNVEVEHLRTEFQELRTTLQ   EDVT
Subjt:  MATTDS---APALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHEDVT

Query:  TSLRNFGLQDVSVENNETRLQHPVVESSDKEDEDEAKKDGGLKE
        TSLRN GLQDVSV+ NET+ QHP   S DKED DEAKKDG  +E
Subjt:  TSLRNFGLQDVSVENNETRLQHPVVESSDKEDEDEAKKDGGLKE

A0A5D3D134 CAP-Gly domain-containing linker protein 1 isoform X21.2e-4779.17Show/hide
Query:  MATTDS---APALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHEDVT
        MA +DS   +PA  S KKENLTPIGSKITELN+SR ELLNRIQSLKQDLQNWRSKLDTQVNTYRSEL++LKK+LNVEVEHLRTEFQELRTTLQ   EDVT
Subjt:  MATTDS---APALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHEDVT

Query:  TSLRNFGLQDVSVENNETRLQHPVVESSDKEDEDEAKKDGGLKE
        TSLRN GLQDVSV+ NET+ QHP   S DKED DEAKKDG  +E
Subjt:  TSLRNFGLQDVSVENNETRLQHPVVESSDKEDEDEAKKDGGLKE

A0A6J1GVY7 CAP-Gly domain-containing linker protein 1-like1.5e-4576.92Show/hide
Query:  MATTDSA------PALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHE
        MA  DS+      PA  S K ENLTPIGSKI+ELN+SR ELLNRIQSLKQDLQNWRSKLDTQVNTYRSEL++LKK+LNVEVEHLRTEFQELRTTLQ   E
Subjt:  MATTDSA------PALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHE

Query:  DVTTSLRNFGLQDVSVENNETRLQHPVVESSDKEDEDEAKKDG
        DVTTSLRN GLQDVSV+NNETR QHP  E S+KED  EA K+G
Subjt:  DVTTSLRNFGLQDVSVENNETRLQHPVVESSDKEDEDEAKKDG

A0A6J1IY17 CAP-Gly domain-containing linker protein 16.6e-4677.62Show/hide
Query:  MATTDS------APALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHE
        MA  DS      APA  S K ENLTPIGSKI+ELN+SR ELLNRIQSLKQDLQNWRSKLDTQVNTYRSEL++LKK+LNVEVEHLRTEFQELRTTLQ   E
Subjt:  MATTDS------APALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHE

Query:  DVTTSLRNFGLQDVSVENNETRLQHPVVESSDKEDEDEAKKDG
        DVTTSLRN GLQDVSV+NNETR QHP  E S+KED  EA K+G
Subjt:  DVTTSLRNFGLQDVSVENNETRLQHPVVESSDKEDEDEAKKDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G15790.1 unknown protein1.8e-2752.9Show/hide
Query:  ATTDSAP-ALRSP---KKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHEDVT
        +T+  AP ++ SP   KK+N  P+ SK+TELN+SR ELLNRIQ+LKQDLQ+WR KLDTQV  YR EL+ LKKTLN+EVE LR EF++L+TTL    +DV+
Subjt:  ATTDSAP-ALRSP---KKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHEDVT

Query:  TSLRNFGLQDVSVENNETRLQHPVVESSDKEDEDEAKK
         SL++ GLQD S E  + R +    +      +D AK+
Subjt:  TSLRNFGLQDVSVENNETRLQHPVVESSDKEDEDEAKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCACCGACTCTGCCCCGGCTCTTCGATCGCCTAAAAAGGAGAATCTGACCCCCATTGGATCCAAAATTACGGAATTGAACCAATCAAGAGGAGAGCTGCTTAA
TAGAATTCAATCTCTTAAGCAGGATCTCCAAAATTGGAGGTCAAAGCTAGACACTCAAGTTAATACCTACCGCAGTGAACTCACTGATCTCAAGAAAACACTCAATGTTG
AGGTGGAGCATCTTCGAACGGAATTTCAAGAACTAAGGACCACCCTTCAGCATAACCACGAAGATGTGACAACCAGCCTGAGGAACTTCGGTCTTCAGGATGTTTCTGTG
GAGAATAACGAGACTCGACTTCAACATCCCGTAGTGGAAAGCAGCGACAAGGAAGACGAAGACGAGGCTAAGAAGGATGGAGGATTAAAGGAATAA
mRNA sequenceShow/hide mRNA sequence
CTATATTCAACATTTTAAAGCCTAGAATCAGTTGTACTAAAAAAAAAAGCCTAGAATCAATATGAAACAAAACATTAACAAAAAAAAAAAAAAATTAAAAGAAACCAAAA
TGTTATTTTAACCACAATTTTTCTTATAATAGGGATGATAATTAATTGATAAAAATCCAAAAACAAGTTCATATTTTCTGTACAGTTGGGTTTTGGTTCAAAATTCAAAT
CTTGGACAAAATTCGTCCCCATCTCCTCTCATTGTTCTTCCTTCTCCCTCTCAATTCTCTCCAATAATTTTTTCTTTTCTCAATTTTTGAATTTTTATTTCGATTTCACC
CATTCCCTTTTGAACCCTAATTTTCAATTCATCAGATTCTGAATTTGCAAATCTGCCCATCTCCATTTCAAGCCGATCCGATCCCTTCTTCAATGGCGACCACCGACTCT
GCCCCGGCTCTTCGATCGCCTAAAAAGGAGAATCTGACCCCCATTGGATCCAAAATTACGGAATTGAACCAATCAAGAGGAGAGCTGCTTAATAGAATTCAATCTCTTAA
GCAGGATCTCCAAAATTGGAGGTCAAAGCTAGACACTCAAGTTAATACCTACCGCAGTGAACTCACTGATCTCAAGAAAACACTCAATGTTGAGGTGGAGCATCTTCGAA
CGGAATTTCAAGAACTAAGGACCACCCTTCAGCATAACCACGAAGATGTGACAACCAGCCTGAGGAACTTCGGTCTTCAGGATGTTTCTGTGGAGAATAACGAGACTCGA
CTTCAACATCCCGTAGTGGAAAGCAGCGACAAGGAAGACGAAGACGAGGCTAAGAAGGATGGAGGATTAAAGGAATAATGAAGCTGAAAATTAAGAGGCAGTTGGTAGCA
TGATGATGAATGTTGTAGGTTTTTCATTGCATGAGAAAAATAACCGTTAGCTGCTTAGTGTTCGTTTTATTGCGATGGATTTCCACATTTTTATGTTCATCCTGCTCTAA
TTTAATTCTCATCTCTGTATTTTTAATTTATTTGAAGATTCAAAGTCATGATGTTATTAATTATAAGCTACTTTATGTCAATTGAGCTTTAAA
Protein sequenceShow/hide protein sequence
MATTDSAPALRSPKKENLTPIGSKITELNQSRGELLNRIQSLKQDLQNWRSKLDTQVNTYRSELTDLKKTLNVEVEHLRTEFQELRTTLQHNHEDVTTSLRNFGLQDVSV
ENNETRLQHPVVESSDKEDEDEAKKDGGLKE