; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0000556 (gene) of Chayote v1 genome

Gene IDSed0000556
OrganismSechium edule (Chayote v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell;
Genome locationLG13:2483977..2488793
RNA-Seq ExpressionSed0000556
SyntenySed0000556
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147506.1 uncharacterized protein LOC101214901 [Cucumis sativus]4.8e-8187.83Show/hide
Query:  ASAAPAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNWKVFAYWAGRG
        A AA + ++SSSQ TRP R VDPLLVTCRFFS++TALTAILCIVS++ISAIRSFKN SDIFDG+FRCYAVVIAFF VLAETEWEFI  NWKV  YWAGRG
Subjt:  ASAAPAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNWKVFAYWAGRG

Query:  MLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLISETV
        MLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAK +VVKDLQELERQKQELE+LLISETV
Subjt:  MLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLISETV

XP_008454462.1 PREDICTED: uncharacterized protein LOC103494861 [Cucumis melo]6.2e-8185.13Show/hide
Query:  DGERDGASAAPAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNWKVFA
        +GE   A+++ + ++SSSQ TRP R VDPLLVTCRFFS++TALTAILCIVS++ISAIRSFKN SDIFDG+FRCYAVVI FFVVLAETEWEFI  NWKV  
Subjt:  DGERDGASAAPAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNWKVFA

Query:  YWAGRGMLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLISETV
        YWAGRGMLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAK +VVKDLQELERQKQELE+LLISETV
Subjt:  YWAGRGMLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLISETV

XP_022922529.1 uncharacterized protein LOC111430498 [Cucurbita moschata]1.4e-8083.92Show/hide
Query:  MDGERDGASA---APAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNW
        M+   +GA+A   A A AASSSQ +RPGRRVDPLLVTCRFFS++TALTAILCIVS++I+AIRSFKN SDIFDG+FRCYAVVIAFFVVLAETEWEFIL NW
Subjt:  MDGERDGASA---APAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNW

Query:  KVFAYWAGRGMLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLISETV
        KV  YWAGRGMLQIFVAVMTRAFP YSVEQRE ILLQ+AASYLLLACGAVYVVSGILCIGFLKRARE+KET+K RVVKDLQELERQKQELE+LLIS++V
Subjt:  KVFAYWAGRGMLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLISETV

XP_023552582.1 uncharacterized protein LOC111810200 isoform X2 [Cucurbita pepo subsp. pepo]1.4e-8084.62Show/hide
Query:  DGERDGASAAPAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNWKVFA
        +G   G +AA A AASSSQ +RPGRRVDPLLVTCRFFS++TALTAILCIVS++++AIRSFKN SDIFDG+FRCYAVVIAFFVVLAETEWEFIL NWKV  
Subjt:  DGERDGASAAPAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNWKVFA

Query:  YWAGRGMLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLISETV
        YWAGRGMLQIFVAVMTRAFP YSVEQRE ILLQ+AASYLLLACGAVYVVSGILCIGFLKRARE+KET+K RVVKDLQELERQKQELE+LLIS++V
Subjt:  YWAGRGMLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLISETV

XP_038905258.1 uncharacterized protein LOC120091338 isoform X1 [Benincasa hispida]5.1e-8388.6Show/hide
Query:  ERDGASAAPAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNWKVFAYW
        ERDG  A  A A+SSSQ  RP RRVDPLLVTCRFFS+LTALTAILCIVS++ISAIRSFKN SD+FDG+FRCYAVVIA FVVLAETEWEFIL NWKV  YW
Subjt:  ERDGASAAPAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNWKVFAYW

Query:  AGRGMLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLISETV
        AGRGMLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRARE+KETAK RVVKDLQELERQKQELE+LLISETV
Subjt:  AGRGMLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLISETV

TrEMBL top hitse value%identityAlignment
A0A0A0KYH6 Uncharacterized protein2.3e-8187.83Show/hide
Query:  ASAAPAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNWKVFAYWAGRG
        A AA + ++SSSQ TRP R VDPLLVTCRFFS++TALTAILCIVS++ISAIRSFKN SDIFDG+FRCYAVVIAFF VLAETEWEFI  NWKV  YWAGRG
Subjt:  ASAAPAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNWKVFAYWAGRG

Query:  MLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLISETV
        MLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAK +VVKDLQELERQKQELE+LLISETV
Subjt:  MLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLISETV

A0A1S3BY74 uncharacterized protein LOC1034948613.0e-8185.13Show/hide
Query:  DGERDGASAAPAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNWKVFA
        +GE   A+++ + ++SSSQ TRP R VDPLLVTCRFFS++TALTAILCIVS++ISAIRSFKN SDIFDG+FRCYAVVI FFVVLAETEWEFI  NWKV  
Subjt:  DGERDGASAAPAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNWKVFA

Query:  YWAGRGMLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLISETV
        YWAGRGMLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAK +VVKDLQELERQKQELE+LLISETV
Subjt:  YWAGRGMLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLISETV

A0A6J1D697 uncharacterized protein LOC1110177044.7e-7477.61Show/hide
Query:  DGERDGASAAPAPAASSSQA-----TRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNN
        DGE + A   P PAASSS +     TR GRRVDPLLVTCRFFS+LTALTAILCIV ++ISA+RSFK+ +DIFDG+FRCYAV+IA FVVLAETEWEFI+  
Subjt:  DGERDGASAAPAPAASSSQA-----TRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNN

Query:  WKVFAYWAGRGMLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELE-RLLISET
        WKV  YWAGRGMLQIFVAVMTRAFP YS +QRELI+LQD ASYLLL CGAVYV SGILC+GFLKRARE+KETAK R VKDLQELERQKQELE RLLI+E+
Subjt:  WKVFAYWAGRGMLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELE-RLLISET

Query:  V
        V
Subjt:  V

A0A6J1E3M8 uncharacterized protein LOC1114304986.7e-8183.92Show/hide
Query:  MDGERDGASA---APAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNW
        M+   +GA+A   A A AASSSQ +RPGRRVDPLLVTCRFFS++TALTAILCIVS++I+AIRSFKN SDIFDG+FRCYAVVIAFFVVLAETEWEFIL NW
Subjt:  MDGERDGASA---APAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNW

Query:  KVFAYWAGRGMLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLISETV
        KV  YWAGRGMLQIFVAVMTRAFP YSVEQRE ILLQ+AASYLLLACGAVYVVSGILCIGFLKRARE+KET+K RVVKDLQELERQKQELE+LLIS++V
Subjt:  KVFAYWAGRGMLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLISETV

A0A6J1J849 uncharacterized protein LOC1114826121.1e-8083.92Show/hide
Query:  MDGERDGASA---APAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNW
        M+   +GA+A   A A AASSSQ  RPGRRVDPLLVTCRFFS++TALTAILCIVS++I+AIRSFKN SDIFDG+FRCYAVVIAFFVVLAETEWEFIL NW
Subjt:  MDGERDGASA---APAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNW

Query:  KVFAYWAGRGMLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLISETV
        KV  YWAGRGMLQIFVAVMTRAFP YSVEQRE ILLQ+AASYLLLACGAVYVVSGILCIGFLKRARE+KET+K RVVKDLQELERQKQELE+LLIS++V
Subjt:  KVFAYWAGRGMLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLISETV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G33625.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 59 Blast hits to 59 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).8.5e-6062.64Show/hide
Query:  APAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNWKVFAYWAGRGMLQ
        +PA  +S S   + G R DP LV CR FS++T+L AILC+V ++++A+RSF++S D+FDG+FRCYAVVIA FVVL ETEW FIL   KV  YWAGRGMLQ
Subjt:  APAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNWKVFAYWAGRGMLQ

Query:  IFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLI
        IFVAVMTRAFP Y  ++++L+LLQ+ ASYLLLACG +YV+SG+LCIGFLKRAR++KE ++ + VKDL+E+ R+K+ELE+LL+
Subjt:  IFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLI

AT4G33625.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).2.7e-5862.64Show/hide
Query:  APAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNWKVFAYWAGRGMLQ
        +PA  +S S   + G R DP LV CR FS++T+L AILC+V ++++A+RSF++S D+FDG+FRCYAVVIA FVVL ETEW FIL   KV  YWAGRGMLQ
Subjt:  APAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNWKVFAYWAGRGMLQ

Query:  IFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLI
        IFVAVMTRAFP Y  ++++L+LLQ+ ASYLLLACG +YV+SG+LCIGFLKRAR++KE ++ + VKDL E+ R+K+ELE+LL+
Subjt:  IFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGGAGAAAGAGACGGAGCGTCGGCAGCGCCGGCGCCGGCGGCGTCATCGTCTCAGGCAACCAGACCTGGAAGAAGAGTAGATCCATTGCTGGTTACTTGCAGGTT
TTTCAGTATTCTAACCGCTCTCACTGCTATTCTCTGCATTGTTTCCAGTATCATCTCCGCGATTCGATCCTTCAAGAACAGCTCCGATATATTCGATGGTGTGTTTCGTT
GTTATGCAGTTGTGATCGCGTTCTTCGTGGTTCTGGCTGAGACGGAGTGGGAATTTATTCTCAACAACTGGAAGGTGTTTGCATATTGGGCTGGCCGGGGCATGTTGCAA
ATCTTTGTTGCTGTCATGACAAGAGCTTTCCCGGTGTACTCTGTAGAGCAGAGAGAGCTTATTCTTTTACAAGATGCCGCAAGTTATCTCCTCCTTGCTTGTGGCGCAGT
CTATGTTGTATCGGGAATATTGTGCATTGGGTTCCTCAAACGTGCTCGTGAAAAAAAAGAGACTGCAAAGTACAGGGTTGTCAAAGATCTTCAGGAGTTGGAAAGACAAA
AACAAGAACTTGAACGGTTGCTTATTTCAGAAACTGTTTGA
mRNA sequenceShow/hide mRNA sequence
GAGAAATTCATGACACGTTTGCAAAACTTCGAACCGTGTAATTGAAAATGTTCATCGATTCATTCATCAAAATCAAATCACGAGACACAATTTTCATCCAACTGAGAAAT
TGATTCAGAAAAAATTCTCCGATCTGAGAGAATGGACGGAGAAAGAGACGGAGCGTCGGCAGCGCCGGCGCCGGCGGCGTCATCGTCTCAGGCAACCAGACCTGGAAGAA
GAGTAGATCCATTGCTGGTTACTTGCAGGTTTTTCAGTATTCTAACCGCTCTCACTGCTATTCTCTGCATTGTTTCCAGTATCATCTCCGCGATTCGATCCTTCAAGAAC
AGCTCCGATATATTCGATGGTGTGTTTCGTTGTTATGCAGTTGTGATCGCGTTCTTCGTGGTTCTGGCTGAGACGGAGTGGGAATTTATTCTCAACAACTGGAAGGTGTT
TGCATATTGGGCTGGCCGGGGCATGTTGCAAATCTTTGTTGCTGTCATGACAAGAGCTTTCCCGGTGTACTCTGTAGAGCAGAGAGAGCTTATTCTTTTACAAGATGCCG
CAAGTTATCTCCTCCTTGCTTGTGGCGCAGTCTATGTTGTATCGGGAATATTGTGCATTGGGTTCCTCAAACGTGCTCGTGAAAAAAAAGAGACTGCAAAGTACAGGGTT
GTCAAAGATCTTCAGGAGTTGGAAAGACAAAAACAAGAACTTGAACGGTTGCTTATTTCAGAAACTGTTTGAAACAATTTAAAGACATCACCTGCTCCTTGCTTCACTGC
TGGGATTGTCTGAGCATTTCTGTTGCTTCATATACTATATCTGTGTTCCCAATGAGCAGGGTTTGACTATAGGAGTTTTTTTATTTTTTTTATTTATTATTATTATTTTT
TAATCTGTGAGTTCTTGGGCTAGCTCATATGTACCTCGATATGGTCTGTTTTAGTTCTGATCATGTAAATGCTGTCTATCTAACTTGAGAATTATTCCGGC
Protein sequenceShow/hide protein sequence
MDGERDGASAAPAPAASSSQATRPGRRVDPLLVTCRFFSILTALTAILCIVSSIISAIRSFKNSSDIFDGVFRCYAVVIAFFVVLAETEWEFILNNWKVFAYWAGRGMLQ
IFVAVMTRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKYRVVKDLQELERQKQELERLLISETV