; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0000606 (gene) of Chayote v1 genome

Gene IDSed0000606
OrganismSechium edule (Chayote v1)
DescriptionNuclear transcription factor Y subunit B
Genome locationLG04:3430089..3430466
RNA-Seq ExpressionSed0000606
SyntenySed0000606
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold
IPR027113 - Transcription factor NFYB/HAP3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050888.1 beta-galactosidase 15-like [Cucumis melo var. makuwa]2.8e-3469.09Show/hide
Query:  MGENWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMN-
        MGENWE ++LP ANV R+MKK++PQ  KISKEAK+TMQECA EFISFVTSEAA+KCH ENRRTLN DDIYWAF SLGLDNYAE S+  LLK R+ E +  
Subjt:  MGENWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMN-

Query:  NHPSCVFQEH
        +  +  FQ H
Subjt:  NHPSCVFQEH

KAG6590402.1 Nuclear transcription factor Y subunit B-4, partial [Cucurbita argyrosperma subsp. sororia]2.8e-3479Show/hide
Query:  MGE-NWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMN
        MGE N + ++LP ANVGRLMKK+LPQ +KISKEAK TMQECATEFISFVTSEAAEKCHK+NRRTLN DDI WAF S GLDNYAE SAKYLLK R VE +N
Subjt:  MGE-NWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMN

XP_022145916.1 nuclear transcription factor Y subunit B-4-like [Momordica charantia]4.5e-4072.03Show/hide
Query:  ENWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMNNH-
        +NWE+++LPSANVGRLMKK++PQTSKISKEAKQTMQECATEFISFVTSEAAEKC++ENRRTLN +DIYWAF +LGLDNYA+ +AKYLL  R  ++M  H 
Subjt:  ENWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMNNH-

Query:  PSCVFQEHGEVNDSDDVG
          C FQ+ GE N+ DD G
Subjt:  PSCVFQEHGEVNDSDDVG

XP_023546470.1 nuclear transcription factor Y subunit B-4-like [Cucurbita pepo subsp. pepo]2.8e-3479Show/hide
Query:  MGE-NWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMN
        MGE N + ++LP ANVGRLMKK+LPQ +KISKEAK TMQECATEFISFVTSEAAEKCHK+NRRTLN DDI WAF S GLDNYAE SAKYLLK R VE +N
Subjt:  MGE-NWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMN

XP_038880507.1 nuclear transcription factor Y subunit B-4-like [Benincasa hispida]7.9e-3766.94Show/hide
Query:  MGENWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMNN
        MGENWE ++LP ANVGR+MKK+LPQ +KISKEAK+TMQECA+EFISFV SEAAEKCHKENRRTLN DDI WA  S GLDNYAE+SAKYLLK R+ E +  
Subjt:  MGENWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMNN

Query:  HPSCVFQEH----GEVNDSDD
            +  +H    GE +D+D+
Subjt:  HPSCVFQEH----GEVNDSDD

TrEMBL top hitse value%identityAlignment
A0A1S3BQ87 Beta-galactosidase2.3e-3466.95Show/hide
Query:  MGENWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMN-
        MGENWE ++LP ANV R+MKK++PQ  KISKEAK+TMQECA EFISFVTSEAA+KCH ENRRTLN DDIYWAF SLGLDNYAE S+  LLK R+ E +  
Subjt:  MGENWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMN-

Query:  NHPSCVFQEHGE-VNDSD
        +  +  FQ H   V D D
Subjt:  NHPSCVFQEHGE-VNDSD

A0A5D3CFV4 Beta-galactosidase 15-like1.4e-3469.09Show/hide
Query:  MGENWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMN-
        MGENWE ++LP ANV R+MKK++PQ  KISKEAK+TMQECA EFISFVTSEAA+KCH ENRRTLN DDIYWAF SLGLDNYAE S+  LLK R+ E +  
Subjt:  MGENWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMN-

Query:  NHPSCVFQEH
        +  +  FQ H
Subjt:  NHPSCVFQEH

A0A6J1CXT8 nuclear transcription factor Y subunit B-4-like2.2e-4072.03Show/hide
Query:  ENWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMNNH-
        +NWE+++LPSANVGRLMKK++PQTSKISKEAKQTMQECATEFISFVTSEAAEKC++ENRRTLN +DIYWAF +LGLDNYA+ +AKYLL  R  ++M  H 
Subjt:  ENWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMNNH-

Query:  PSCVFQEHGEVNDSDDVG
          C FQ+ GE N+ DD G
Subjt:  PSCVFQEHGEVNDSDDVG

A0A6J1HDY6 nuclear transcription factor Y subunit B-4-like1.4e-3479Show/hide
Query:  MGE-NWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMN
        MGE N + ++LP ANVGRLMKK+LPQ +KISKEAK TMQECATEFISFVTSEAAEKCHK+NRRTLN DDI WAF S GLDNYAE SAKYLLK R VE +N
Subjt:  MGE-NWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMN

A0A6J1HUN8 nuclear transcription factor Y subunit B-4-like1.8e-3467.77Show/hide
Query:  MGE-NWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMN
        MGE N + ++LP ANVGRLMKK+LPQ +KISKEAK TMQECATEFISFVTSEAAEKCHK+NRRTLN DDI WAF S GLDNYAE SAKYLLK R +E +N
Subjt:  MGE-NWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMN

Query:  ----NHPSCVFQEHGEVNDSD
             + +   QEHG+  + +
Subjt:  ----NHPSCVFQEHGEVNDSD

SwissProt top hitse value%identityAlignment
O04027 Nuclear transcription factor Y subunit B-43.7e-2958.62Show/hide
Query:  LPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMNNHPSCVFQEH
        LP ANVGRLMK++LP  +KISKEAKQT+QECATEFISFVT EA+EKCH+ENR+T+N DDI+WA S+LGLDNYA+   ++L K R+ E           EH
Subjt:  LPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMNNHPSCVFQEH

Query:  GEVNDSDDVGQTSHTN
         +   S+D G    TN
Subjt:  GEVNDSDDVGQTSHTN

O23310 Nuclear transcription factor Y subunit B-36.7e-2356.32Show/hide
Query:  LPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVE
        LP ANV R+MKK LP  +KISK+AK+T+QEC +EFISF+T EA++KC +E R+T+N DD+ WA ++LG ++Y E    YL K R+VE
Subjt:  LPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVE

O82248 Nuclear transcription factor Y subunit B-54.2e-2562.07Show/hide
Query:  LPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVE
        LP ANVGR+MK +LP  +K+SKEAK+TMQEC +EFISFVT EA++KCHKE R+T+N DDI WA ++LG D+YA    KYL + R +E
Subjt:  LPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVE

Q75IZ7 Nuclear transcription factor Y subunit B-81.5e-2254.02Show/hide
Query:  LPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVE
        LP ANV R+MKK LP  +KISK+AK+T+QEC +EFISF+T EA++KC +E R+T+N DD+ WA ++LG ++Y +    YL K R++E
Subjt:  LPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVE

Q9FGJ3 Nuclear transcription factor Y subunit B-21.8e-2357.47Show/hide
Query:  LPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVE
        LP ANV R+MKK LP  +KISK+AK+TMQEC +EFISFVT EA++KC KE R+T+N DD+ WA ++LG ++Y E    YL + R++E
Subjt:  LPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVE

Arabidopsis top hitse value%identityAlignment
AT1G09030.1 nuclear factor Y, subunit B42.6e-3058.62Show/hide
Query:  LPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMNNHPSCVFQEH
        LP ANVGRLMK++LP  +KISKEAKQT+QECATEFISFVT EA+EKCH+ENR+T+N DDI+WA S+LGLDNYA+   ++L K R+ E           EH
Subjt:  LPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMNNHPSCVFQEH

Query:  GEVNDSDDVGQTSHTN
         +   S+D G    TN
Subjt:  GEVNDSDDVGQTSHTN

AT2G38880.2 nuclear factor Y, subunit B12.4e-2353.33Show/hide
Query:  LPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMN
        LP AN+ R+MKK LP   KI K+AK T+QEC +EFISF+TSEA++KC KE R+T+N DD+ WA ++LG ++Y E    YL + R++E  N
Subjt:  LPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMN

AT2G47810.1 nuclear factor Y, subunit B53.0e-2662.07Show/hide
Query:  LPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVE
        LP ANVGR+MK +LP  +K+SKEAK+TMQEC +EFISFVT EA++KCHKE R+T+N DDI WA ++LG D+YA    KYL + R +E
Subjt:  LPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVE

AT4G14540.1 nuclear factor Y, subunit B34.8e-2456.32Show/hide
Query:  LPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVE
        LP ANV R+MKK LP  +KISK+AK+T+QEC +EFISF+T EA++KC +E R+T+N DD+ WA ++LG ++Y E    YL K R+VE
Subjt:  LPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVE

AT5G47640.1 nuclear factor Y, subunit B21.3e-2457.47Show/hide
Query:  LPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVE
        LP ANV R+MKK LP  +KISK+AK+TMQEC +EFISFVT EA++KC KE R+T+N DD+ WA ++LG ++Y E    YL + R++E
Subjt:  LPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAGAATTGGGAAAGGGTTGAGCTTCCAAGTGCAAATGTGGGGAGATTGATGAAGAAAATGCTTCCACAAACATCAAAGATCTCAAAAGAAGCCAAACAAACAAT
GCAAGAATGTGCAACAGAGTTCATCAGCTTTGTGACAAGTGAAGCAGCAGAAAAGTGCCATAAAGAGAATAGAAGAACCCTAAATGCTGATGATATTTATTGGGCCTTTT
CTTCTCTTGGATTGGATAATTATGCTGAGATTTCTGCTAAATATTTGCTCAAGCTTAGACAAGTTGAATCAATGAATAATCATCCCAGTTGTGTGTTTCAAGAACATGGA
GAAGTCAATGATAGTGATGATGTGGGTCAAACTTCTCACACAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAGAATTGGGAAAGGGTTGAGCTTCCAAGTGCAAATGTGGGGAGATTGATGAAGAAAATGCTTCCACAAACATCAAAGATCTCAAAAGAAGCCAAACAAACAAT
GCAAGAATGTGCAACAGAGTTCATCAGCTTTGTGACAAGTGAAGCAGCAGAAAAGTGCCATAAAGAGAATAGAAGAACCCTAAATGCTGATGATATTTATTGGGCCTTTT
CTTCTCTTGGATTGGATAATTATGCTGAGATTTCTGCTAAATATTTGCTCAAGCTTAGACAAGTTGAATCAATGAATAATCATCCCAGTTGTGTGTTTCAAGAACATGGA
GAAGTCAATGATAGTGATGATGTGGGTCAAACTTCTCACACAAATTAA
Protein sequenceShow/hide protein sequence
MGENWERVELPSANVGRLMKKMLPQTSKISKEAKQTMQECATEFISFVTSEAAEKCHKENRRTLNADDIYWAFSSLGLDNYAEISAKYLLKLRQVESMNNHPSCVFQEHG
EVNDSDDVGQTSHTN