CuGenDBv2

Gene ID	Sed0000669
Organism	Sechium edule (Chayote v1)
Description	Photosystem II protein D1
Genome location	LG09:21139690..21140256
RNA-Seq Expression	Sed0000669
Synteny	Sed0000669
Gene Ontology terms	GO:0009635 - response to herbicide (biological process) GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AAT02746.1 photosystem II 32 kDa protein [Podomitrium phyllanthus]

7.2e-73

87.27

Show/hide

Query:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR
        +GWFGVLMIPTLLTATSVFIIAFIAAP V  DGIR+ VSGSLLYGNNIISGAIIPTS AIGL+FYPIREA SVDEWLYNGG YELI LHFLLGVACYMGR
Subjt:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR

Query:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM
        EWELSFR G+ PWI VAYS PVAA TAVFL+YPIGQ SFSD MPLGIS TFNFMIVFQAEHNILM
Subjt:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM

AAV97753.1 PsbA [Greeneothallus gemmiparus]

5.5e-73

87.88

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Query:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR
        +GWFGVLMIPTLLTATSVFIIAFIAAP V  DGIR+ VSGSLLYGNNIISGAIIPTS AIGL+FYPIREA SVDEWLYNGG YELI LHFLLGVACYMGR
Subjt:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR

Query:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM
        EWELSFR G+ PWI VAYS PVAA TAVFLIYPIGQ SFSD MPLGIS TFNFMIVFQAEHNILM
Subjt:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM

AFU95398.1 PsbA, partial [Galearia maingayi]

4.2e-73

87.88

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Query:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR
        +GWFGVLMIPTLLTATSVFIIAFIAAPLV  DGIR+LVSGSLLYGNNIISGAIIPTS AIGL+FYPI EA SVDEWLYNGG YELI LHFLLGVACYMGR
Subjt:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR

Query:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM
        EWELSFR G+ PWI VAYS PVAA  AVFLIYPIGQ SFSD MPLGIS TFNFMIVFQAEHNILM
Subjt:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM

PHT29345.1 Photosystem II protein D1 [Capsicum baccatum]

9.4e-73

87.88

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Query:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR
        +GWFGVLMIPTLLTATSVFIIAFIAAP V  DGIR+ VSGSLLYGNNIISGAIIPTS AIGL+FYPI EA SVDEWLYNGG YELI LHFLLGVACYMGR
Subjt:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR

Query:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM
        EWELSFR G+ PWIVVAYS PVAA TAVFLIYPIGQ SFSD MPLGIS TFNFMIVFQAEHNILM
Subjt:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM

YP_009073160.1 photosystem II protein D1 [Hakonechloa macra]

9.4e-73

87.88

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Query:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR
        +GWFGVLMIPTLLTATSVFIIAFIAAP V TDGIR+ VSGSLLYGNNIISGAIIPTS AIGL+FYPI EA SVDEWLYNGG YELI LHFLLGVACYMGR
Subjt:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR

Query:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM
        EWELSFR G+ PWI VAYS PVAA TAVFLIYPIGQ SFSD MPLGIS TFNFMIVFQAEHNILM
Subjt:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM

TrEMBL top hits

e value

%identity

Alignment

A0A089PER2 Photosystem II protein D1

4.5e-73

87.88

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Query:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR
        +GWFGVLMIPTLLTATSVFIIAFIAAP V TDGIR+ VSGSLLYGNNIISGAIIPTS AIGL+FYPI EA SVDEWLYNGG YELI LHFLLGVACYMGR
Subjt:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR

Query:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM
        EWELSFR G+ PWI VAYS PVAA TAVFLIYPIGQ SFSD MPLGIS TFNFMIVFQAEHNILM
Subjt:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM

A0A2G2V8M4 Photosystem II protein D1

4.5e-73

87.88

Show/hide

Query:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR
        +GWFGVLMIPTLLTATSVFIIAFIAAP V  DGIR+ VSGSLLYGNNIISGAIIPTS AIGL+FYPI EA SVDEWLYNGG YELI LHFLLGVACYMGR
Subjt:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR

Query:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM
        EWELSFR G+ PWIVVAYS PVAA TAVFLIYPIGQ SFSD MPLGIS TFNFMIVFQAEHNILM
Subjt:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM

K4KBL6 Photosystem II protein D1 (Fragment)

2.0e-73

87.88

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Query:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR
        +GWFGVLMIPTLLTATSVFIIAFIAAPLV  DGIR+LVSGSLLYGNNIISGAIIPTS AIGL+FYPI EA SVDEWLYNGG YELI LHFLLGVACYMGR
Subjt:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR

Query:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM
        EWELSFR G+ PWI VAYS PVAA  AVFLIYPIGQ SFSD MPLGIS TFNFMIVFQAEHNILM
Subjt:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM

Q5EWJ0 Photosystem II protein D1

2.7e-73

87.88

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Query:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR
        +GWFGVLMIPTLLTATSVFIIAFIAAP V  DGIR+ VSGSLLYGNNIISGAIIPTS AIGL+FYPIREA SVDEWLYNGG YELI LHFLLGVACYMGR
Subjt:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR

Query:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM
        EWELSFR G+ PWI VAYS PVAA TAVFLIYPIGQ SFSD MPLGIS TFNFMIVFQAEHNILM
Subjt:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM

Q5YG82 Photosystem II protein D1

3.5e-73

87.27

Show/hide

Query:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR
        +GWFGVLMIPTLLTATSVFIIAFIAAP V  DGIR+ VSGSLLYGNNIISGAIIPTS AIGL+FYPIREA SVDEWLYNGG YELI LHFLLGVACYMGR
Subjt:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR

Query:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM
        EWELSFR G+ PWI VAYS PVAA TAVFL+YPIGQ SFSD MPLGIS TFNFMIVFQAEHNILM
Subjt:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM

SwissProt top hits

e value

%identity

Alignment

A1E9Y8 Photosystem II protein D1

6.1e-75

87.27

Show/hide

Query:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR
        +GWFGVLMIPTLLTATSVFIIAFIAAP V  DGIR+ VSGSLLYGNNIISGAIIPTS AIGL+FYPI EA SVDEWLYNGG YELI LHFLLGVACYMGR
Subjt:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR

Query:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM
        EWELSFR G+ PWI VAYS PVAA TAVFLIYPIGQ SFSD MPLGIS TFNFMIVFQAEHNILM
Subjt:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM

A4QJ96 Photosystem II protein D1

6.1e-75

87.27

Show/hide

Query:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR
        +GWFGVLMIPTLLTATSVFIIAFIAAP V  DGIR+ VSGSLLYGNNIISGAIIPTS AIGL+FYPI EA SVDEWLYNGG YELI LHFLLGVACYMGR
Subjt:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR

Query:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM
        EWELSFR G+ PWI VAYS PVAA TAVFLIYPIGQ SFSD MPLGIS TFNFMIVFQAEHNILM
Subjt:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM

A4QJI0 Photosystem II protein D1

6.1e-75

87.27

Show/hide

Query:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR
        +GWFGVLMIPTLLTATSVFIIAFIAAP V  DGIR+ VSGSLLYGNNIISGAIIPTS AIGL+FYPI EA SVDEWLYNGG YELI LHFLLGVACYMGR
Subjt:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR

Query:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM
        EWELSFR G+ PWI VAYS PVAA TAVFLIYPIGQ SFSD MPLGIS TFNFMIVFQAEHNILM
Subjt:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM

P02956 Photosystem II protein D1

6.1e-75

87.27

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Query:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR
        +GWFGVLMIPTLLTATSVFIIAFIAAP V  DGIR+ VSGSLLYGNNIISGAIIPTS AIGL+FYPI EA SVDEWLYNGG YELI LHFLLGVACYMGR
Subjt:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR

Query:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM
        EWELSFR G+ PWI VAYS PVAA TAVFLIYPIGQ SFSD MPLGIS TFNFMIVFQAEHNILM
Subjt:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM

Q3V554 Photosystem II protein D1

6.1e-75

87.27

Show/hide

Query:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR
        +GWFGVLMIPTLLTATSVFIIAFIAAP V  DGIR+ VSGSLLYGNNIISGAIIPTS AIGL+FYPI EA SVDEWLYNGG YELI LHFLLGVACYMGR
Subjt:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR

Query:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM
        EWELSFR G+ PWI VAYS PVAA TAVFLIYPIGQ SFSD MPLGIS TFNFMIVFQAEHNILM
Subjt:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM

Arabidopsis top hits

e value

%identity

Alignment

ATCG00020.1 photosystem II reaction center protein A

4.3e-76

87.27

Show/hide

Query:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR
        +GWFGVLMIPTLLTATSVFIIAFIAAP V  DGIR+ VSGSLLYGNNIISGAIIPTS AIGL+FYPI EA SVDEWLYNGG YELI LHFLLGVACYMGR
Subjt:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGR

Query:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM
        EWELSFR G+ PWI VAYS PVAA TAVFLIYPIGQ SFSD MPLGIS TFNFMIVFQAEHNILM
Subjt:  EWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILM

ATCG00270.1 photosystem II reaction center protein D

1.8e-13

27.27

Show/hide

Query:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIG---LYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACY
        +GW G+L+ P    A       +      VT      ++ S L G N ++ A+   + ++    L  +          W   GGL+  + LH    +  +
Subjt:  MGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIG---LYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACY

Query:  MGREWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHN
        M R++EL+    L P+  +A+S P+A   +VFLIYP+GQ  +      G+++ F F++ FQ  HN
Subjt:  MGREWELSFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCGAAAGCGCAAGCCTATGGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCTAGTAGTTAC
TGATGGTATTCGTAAACTTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATCCCTACTTCTACAGCTATCGGGTTGTACTTTTACCCAATTC
GGGAAGCTACTTCCGTTGATGAATGGTTATACAATGGTGGTCTTTATGAGCTAATTGGTCTACACTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAGTGGGAACTT
AGTTTCCGTCAGGGTTTGCATCCTTGGATTGTTGTTGCATATTCAACTCCTGTTGCAGCTACTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGAAAGCTTTTCTGA
CTATATGCCTCTAGGAATCTCTAGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGGCTTGA

mRNA sequence

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Protein sequence

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MRKRKPMGWFGVLMIPTLLTATSVFIIAFIAAPLVVTDGIRKLVSGSLLYGNNIISGAIIPTSTAIGLYFYPIREATSVDEWLYNGGLYELIGLHFLLGVACYMGREWEL
SFRQGLHPWIVVAYSTPVAATTAVFLIYPIGQESFSDYMPLGISSTFNFMIVFQAEHNILMA

Sed0000669 (gene) of Chayote v1 genome