CuGenDBv2

Gene ID	Sed0000703
Organism	Sechium edule (Chayote v1)
Description	photosystem II core complex proteins psbY, chloroplastic-like
Genome location	LG04:4051668..4052645
RNA-Seq Expression	Sed0000703
Synteny	Sed0000703
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0045454 - cell redox homeostasis (biological process) GO:0009523 - photosystem II (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030145 - manganese ion binding (molecular function)
InterPro domains	IPR009388 - Photosystem II PsbY IPR038760 - Photosystem II PsbY, plant

Homology

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GenBank top hits

e value

%identity

Alignment

KGN52335.2 hypothetical protein Csa_009403 [Cucumis sativus]

7.9e-70

87.64

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Query:  ATTMATMAILNAKCFTP-NKTPLLLSKP-TKPISLP-NLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        A TMATMAILNAKCFTP NKTPLL SKP TKPISLP  + TK SLAGTAIAGAIFS LSSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  ATTMATMAILNAKCFTP-NKTPLLLSKP-TKPISLP-NLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI+GLGLGGL A+GLV TPEA AAEA +DGRGQLLL VVAPAI WVL+NILQPALNQLNRMRS+
Subjt:  PALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE

XP_004135291.1 photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]

3.6e-70

88.2

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Query:  ATTMATMAILNAKCFTP-NKTPLLLSKP-TKPISLP-NLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        A TMATMAILNAKCFTP NKTPLL SKP TKPISLP  + TK SLAGTAIAGAIFS LSSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  ATTMATMAILNAKCFTP-NKTPLLLSKP-TKPISLP-NLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI+GLGLGGL A+GLV TPEA AAEA +DGRGQLLL VVAPAI WVL+NILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE

XP_008446112.1 PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis melo]

1.4e-71

89.33

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Query:  ATTMATMAILNAKCFTP-NKTPLLL-SKPTKPISLP-NLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        A TMATMAILNAKCFTP NKTP+LL SKPTKPISLP  + TK SLAGTAIAGAIFS LSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  ATTMATMAILNAKCFTP-NKTPLLL-SKPTKPISLP-NLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI+GLGLGGL A+GLV TPEA AAEAS D RGQLLL VVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE

XP_022998705.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita maxima]

6.1e-70

87.01

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Query:  ATTMATMAILNAKCFTPNKT--PLLLSKPTKPISLPNLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQP
        A TMATMAILNAKCFTPN+T  PLL SKPT+PISLP    KSSLAG+AIAGAIFS  S  DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQP
Subjt:  ATTMATMAILNAKCFTPNKT--PLLLSKPTKPISLPNLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQP

Query:  ALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE
        ALNQINRMRTEKAVI GLGLGGL A+GLV TPEA AAEAS D RGQLLL VVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  ALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE

XP_038891337.1 photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida]

2.4e-74

89.83

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Query:  ATTMATMAILNAKCFTPNKTPLLLSKPTKPISLPNL--HTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQP
        A TMATMAILNAKCFTPNKTPLL SKPT+PISLP+L   TK SLAGTAIAGAIFS  SSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQP
Subjt:  ATTMATMAILNAKCFTPNKTPLLLSKPTKPISLPNL--HTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQP

Query:  ALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE
        ALNQINRMRTEKAVI+GLGLGGL A+GLV TPEA AAEAS+DGRGQLLL VVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  ALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTG2 Uncharacterized protein

1.7e-70

88.2

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Query:  ATTMATMAILNAKCFTP-NKTPLLLSKP-TKPISLP-NLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        A TMATMAILNAKCFTP NKTPLL SKP TKPISLP  + TK SLAGTAIAGAIFS LSSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  ATTMATMAILNAKCFTP-NKTPLLLSKP-TKPISLP-NLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI+GLGLGGL A+GLV TPEA AAEA +DGRGQLLL VVAPAI WVL+NILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE

A0A1S3BDT7 photosystem II core complex proteins psbY, chloroplastic-like

7.0e-72

89.33

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Query:  ATTMATMAILNAKCFTP-NKTPLLL-SKPTKPISLP-NLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        A TMATMAILNAKCFTP NKTP+LL SKPTKPISLP  + TK SLAGTAIAGAIFS LSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  ATTMATMAILNAKCFTP-NKTPLLL-SKPTKPISLP-NLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI+GLGLGGL A+GLV TPEA AAEAS D RGQLLL VVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE

A0A5A7SY80 Photosystem II core complex proteins psbY

7.0e-72

89.33

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Query:  ATTMATMAILNAKCFTP-NKTPLLL-SKPTKPISLP-NLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        A TMATMAILNAKCFTP NKTP+LL SKPTKPISLP  + TK SLAGTAIAGAIFS LSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  ATTMATMAILNAKCFTP-NKTPLLL-SKPTKPISLP-NLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI+GLGLGGL A+GLV TPEA AAEAS D RGQLLL VVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE

A0A6J1GXR1 photosystem II core complex proteins psbY, chloroplastic-like

6.5e-70

87.01

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Query:  ATTMATMAILNAKCFTPNKT--PLLLSKPTKPISLPNLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQP
        A TMATMAILNAKCFTPN+T  PLL SKPT PISLP    KSSLAG+AIAGAIFS  S  DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQP
Subjt:  ATTMATMAILNAKCFTPNKT--PLLLSKPTKPISLPNLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQP

Query:  ALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE
        ALNQINRMRTEKAVI GLGLGGL A+GLV TPEA AAEAS D RGQLLL VVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  ALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE

A0A6J1KD85 photosystem II core complex proteins psbY, chloroplastic-like

2.9e-70

87.01

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Query:  ATTMATMAILNAKCFTPNKT--PLLLSKPTKPISLPNLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQP
        A TMATMAILNAKCFTPN+T  PLL SKPT+PISLP    KSSLAG+AIAGAIFS  S  DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQP
Subjt:  ATTMATMAILNAKCFTPNKT--PLLLSKPTKPISLPNLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQP

Query:  ALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE
        ALNQINRMRTEKAVI GLGLGGL A+GLV TPEA AAEAS D RGQLLL VVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  ALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE

SwissProt top hits

e value

%identity

Alignment

O49347 Photosystem II core complex proteins psbY, chloroplastic

9.5e-42

55.08

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Query:  MATMAILNAKCFTPNKTPLLLSKPTKP---ISL---PNLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADL----AEGDNRGLALLLPLIPAVAWVLF
        MA       KC + N +P  L   TK    ISL   P  +   ++  TA+AGA+FS+LS  + A A QQIA L    A  DNRGLALLLP++PA+AWVL+
Subjt:  MATMAILNAKCFTPNKTPLLLSKPTKP---ISL---PNLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADL----AEGDNRGLALLLPLIPAVAWVLF

Query:  NILQPALNQINRMRTEKAVIIGLGL-GGLAAAGLVATP-----EAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRS
        NILQPA+NQ+N+MR  K +++GLG+ GGLAA+GL+  P      A AA AS+D RGQLLL VV PA+LWVLYNILQPALNQ+N+MRS
Subjt:  NILQPALNQINRMRTEKAVIIGLGL-GGLAAAGLVATP-----EAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRS

P80470 Photosystem II core complex proteins psbY, chloroplastic

1.8e-45

60.3

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Query:  MAATTMATMAILNAKCFT--PNKTPLLLSKPT-KPISLPNLHTKSS---------LAGTAIAGAIFSALSSGDAAFAAQQIADLA----EGDNRGLALLL
        MAAT   TMA+LN KC T   NKT     KPT KPISL  L   +S         +   AIAGA+F+ L S D AFA QQ+AD+A      DNRGLALLL
Subjt:  MAATTMATMAILNAKCFT--PNKTPLLLSKPT-KPISLPNLHTKSS---------LAGTAIAGAIFSALSSGDAAFAAQQIADLA----EGDNRGLALLL

Query:  PLIPAVAWVLFNILQPALNQINRMRTE-KAVIIGLGLGGLAAAG-LVATPEAAAAE----ASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE
        P+IPA+ WVLFNILQPALNQIN+MR E KA I+GLGL GLA +G L+ATPEA AA       +D RG LLL VV PAI WVL+NILQPALNQLN+MRS+
Subjt:  PLIPAVAWVLFNILQPALNQINRMRTE-KAVIIGLGLGGLAAAG-LVATPEAAAAE----ASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G67740.1 photosystem II BY

6.7e-43

55.08

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Query:  MATMAILNAKCFTPNKTPLLLSKPTKP---ISL---PNLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADL----AEGDNRGLALLLPLIPAVAWVLF
        MA       KC + N +P  L   TK    ISL   P  +   ++  TA+AGA+FS+LS  + A A QQIA L    A  DNRGLALLLP++PA+AWVL+
Subjt:  MATMAILNAKCFTPNKTPLLLSKPTKP---ISL---PNLHTKSSLAGTAIAGAIFSALSSGDAAFAAQQIADL----AEGDNRGLALLLPLIPAVAWVLF

Query:  NILQPALNQINRMRTEKAVIIGLGL-GGLAAAGLVATP-----EAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRS
        NILQPA+NQ+N+MR  K +++GLG+ GGLAA+GL+  P      A AA AS+D RGQLLL VV PA+LWVLYNILQPALNQ+N+MRS
Subjt:  NILQPALNQINRMRTEKAVIIGLGL-GGLAAAGLVATP-----EAAAAEASTDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGTTTGGATAGGAATGGTGGGGGCAACAAAAAATTGGAGGCTGAAATCTTTCCATAATCCCACCATTTTAGATAAGAATTCAATCCCTTCTCTCAATTCCATTGGCTC
TCATTTCCCTCAAATTCCCCAAATTCAAACAAAAAGCCCTAAACCAATTGCAGAGCAACAAATCTTGAAATTCACTTCAATGGCGGCAACAACGATGGCAACCATGGCGA
TCCTCAACGCCAAATGCTTCACTCCCAACAAAACCCCACTCCTCCTTTCAAAACCCACAAAACCCATTTCCCTTCCCAACCTCCACACCAAATCCTCCCTCGCCGGAACC
GCCATCGCCGGAGCAATCTTCTCCGCACTGAGCTCCGGCGACGCTGCCTTCGCCGCCCAGCAGATCGCCGATCTGGCGGAGGGGGACAACAGGGGGCTGGCTCTGCTGCT
GCCGCTCATCCCGGCGGTGGCCTGGGTTCTGTTCAACATTCTTCAGCCGGCGCTGAACCAGATCAACCGGATGCGCACGGAGAAGGCGGTGATCATCGGGCTGGGGCTCG
GCGGGCTGGCTGCGGCGGGGCTGGTGGCCACGCCGGAGGCTGCGGCGGCGGAGGCCTCGACCGACGGCCGGGGGCAGCTGCTGCTTTTTGTGGTGGCGCCGGCGATTCTG
TGGGTTTTGTATAATATTCTACAGCCGGCGCTCAACCAGCTCAACCGGATGAGGTCTGAGTGA

mRNA sequence

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ATTTAATAGTGTCACTCCAACAGAAAATAAGAAGATATTATGGTTTGGATAGGAATGGTGGGGGCAACAAAAAATTGGAGGCTGAAATCTTTCCATAATCCCACCATTTT
AGATAAGAATTCAATCCCTTCTCTCAATTCCATTGGCTCTCATTTCCCTCAAATTCCCCAAATTCAAACAAAAAGCCCTAAACCAATTGCAGAGCAACAAATCTTGAAAT
TCACTTCAATGGCGGCAACAACGATGGCAACCATGGCGATCCTCAACGCCAAATGCTTCACTCCCAACAAAACCCCACTCCTCCTTTCAAAACCCACAAAACCCATTTCC
CTTCCCAACCTCCACACCAAATCCTCCCTCGCCGGAACCGCCATCGCCGGAGCAATCTTCTCCGCACTGAGCTCCGGCGACGCTGCCTTCGCCGCCCAGCAGATCGCCGA
TCTGGCGGAGGGGGACAACAGGGGGCTGGCTCTGCTGCTGCCGCTCATCCCGGCGGTGGCCTGGGTTCTGTTCAACATTCTTCAGCCGGCGCTGAACCAGATCAACCGGA
TGCGCACGGAGAAGGCGGTGATCATCGGGCTGGGGCTCGGCGGGCTGGCTGCGGCGGGGCTGGTGGCCACGCCGGAGGCTGCGGCGGCGGAGGCCTCGACCGACGGCCGG
GGGCAGCTGCTGCTTTTTGTGGTGGCGCCGGCGATTCTGTGGGTTTTGTATAATATTCTACAGCCGGCGCTCAACCAGCTCAACCGGATGAGGTCTGAGTGATTATGATT
ATATATATATACAGTGATACCGAATGGGTCAGTCGTGCAATTAGTTATCTGATTTGGTATTGATCTACTTCTGCTCTATTGTCACCGATTTGATCCTTGAAATTGGTATT
TGTAATCTCTTCCCATATATATATACGGTGATCATCGCAAAATAGCTGTAATTTTTATGCAATGGTTTATAAATGAAGCGTTCGTGTCTGAAACCAAA

Protein sequence

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MVWIGMVGATKNWRLKSFHNPTILDKNSIPSLNSIGSHFPQIPQIQTKSPKPIAEQQILKFTSMAATTMATMAILNAKCFTPNKTPLLLSKPTKPISLPNLHTKSSLAGT
AIAGAIFSALSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIIGLGLGGLAAAGLVATPEAAAAEASTDGRGQLLLFVVAPAIL
WVLYNILQPALNQLNRMRSE

Sed0000703 (gene) of Chayote v1 genome