; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0000714 (gene) of Chayote v1 genome

Gene IDSed0000714
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerase III subunit rpc6-like
Genome locationLG02:50783460..50785617
RNA-Seq ExpressionSed0000714
SyntenySed0000714
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR007832 - RNA polymerase Rpc34
IPR016049 - RNA polymerase Rpc34-like
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK13079.1 DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo var. makuwa]5.8e-8969.75Show/hide
Query:  QASSSLKRRR----AEGGGGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGD
        Q  SSLKR+R     +    GAL+ QEK L+DLICSKQSMGI TFDMKRET  A+SVVTK+LKSLQ KGLIK+VQHYQNK +KFY+S DFEP+KELTGG+
Subjt:  QASSSLKRRR----AEGGGGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGD

Query:  WYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPI
        WY+DG LD +YINTLK VC RMIQR K++ I+GIVE+FK+SGA KVEL+  QI+EIVNALVLD++V E+KS+G  EF F P+G I YK+C + G KGEP 
Subjt:  WYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPI

Query:  IGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF
         GAMASIPCGVCPRIT C P G ISP TCVYYTKWLDF
Subjt:  IGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF

TYK19400.1 DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo var. makuwa]2.3e-9071.55Show/hide
Query:  QASSSLKRRRAEGG----GGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGD
        Q  SSLKR+R + G     GGAL+ QEK L+DLICSKQSMGI TFDMKRET  A+SVVTK+LKSLQ KGLIK+VQHYQNK +KFY+S DFEP+KELTGG+
Subjt:  QASSSLKRRRAEGG----GGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGD

Query:  WYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGA-KGEP
        WY+DG LD +YINTLK VC RMIQR K++ I+GIVE+FK+SGA KVELS  QI+EIVNALVLD++VME+KS+G  EF F P+G I YK+C + G  KGEP
Subjt:  WYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGA-KGEP

Query:  IIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF
         IGAMASIPCGVCPRIT C P G ISP TCVYYTKWLDF
Subjt:  IIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF

XP_004148278.1 DNA-directed RNA polymerase III subunit RPC6 [Cucumis sativus]2.0e-8970.71Show/hide
Query:  QASSSLKRRRAEGG----GGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGD
        +  SSLKR+R + G     GGAL+ QEK L+DLICSKQSMGI TFDMKRET  A+SVVTK+LKSLQ KGLIK+VQHYQNK +KFY+S DFEP+KELTGG+
Subjt:  QASSSLKRRRAEGG----GGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGD

Query:  WYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGA-KGEP
        WY+DG LD +YINTLK VC RMIQR K++ I+GIVE+FK+SGA KVELS  QI+EIVNALVLD++VME+KS+G  EF F P+G I YK+C + G  KGEP
Subjt:  WYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGA-KGEP

Query:  IIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF
          GAMASIPCGVCPRIT C P G ISP TCVYYTKWLDF
Subjt:  IIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF

XP_008439941.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo]5.8e-8969.75Show/hide
Query:  QASSSLKRRR----AEGGGGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGD
        Q  SSLKR+R     +    GAL+ QEK L+DLICSKQSMGI TFDMKRET  A+SVVTK+LKSLQ KGLIK+VQHYQNK +KFY+S DFEP+KELTGG+
Subjt:  QASSSLKRRR----AEGGGGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGD

Query:  WYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPI
        WY+DG LD +YINTLK VC RMIQR K++ I+GIVE+FK+SGA KVEL+  QI+EIVNALVLD++V E+KS+G  EF F P+G I YK+C + G KGEP 
Subjt:  WYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPI

Query:  IGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF
         GAMASIPCGVCPRIT C P G ISP TCVYYTKWLDF
Subjt:  IGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF

XP_008448982.1 PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo]2.3e-9071.55Show/hide
Query:  QASSSLKRRRAEGG----GGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGD
        Q  SSLKR+R + G     GGAL+ QEK L+DLICSKQSMGI TFDMKRET  A+SVVTK+LKSLQ KGLIK+VQHYQNK +KFY+S DFEP+KELTGG+
Subjt:  QASSSLKRRRAEGG----GGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGD

Query:  WYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGA-KGEP
        WY+DG LD +YINTLK VC RMIQR K++ I+GIVE+FK+SGA KVELS  QI+EIVNALVLD++VME+KS+G  EF F P+G I YK+C + G  KGEP
Subjt:  WYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGA-KGEP

Query:  IIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF
         IGAMASIPCGVCPRIT C P G ISP TCVYYTKWLDF
Subjt:  IIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF

TrEMBL top hitse value%identityAlignment
A0A0A0L5W6 Uncharacterized protein9.6e-9070.71Show/hide
Query:  QASSSLKRRRAEGG----GGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGD
        +  SSLKR+R + G     GGAL+ QEK L+DLICSKQSMGI TFDMKRET  A+SVVTK+LKSLQ KGLIK+VQHYQNK +KFY+S DFEP+KELTGG+
Subjt:  QASSSLKRRRAEGG----GGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGD

Query:  WYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGA-KGEP
        WY+DG LD +YINTLK VC RMIQR K++ I+GIVE+FK+SGA KVELS  QI+EIVNALVLD++VME+KS+G  EF F P+G I YK+C + G  KGEP
Subjt:  WYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGA-KGEP

Query:  IIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF
          GAMASIPCGVCPRIT C P G ISP TCVYYTKWLDF
Subjt:  IIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF

A0A1S3BL06 DNA-directed RNA polymerase III subunit rpc6-like1.1e-9071.55Show/hide
Query:  QASSSLKRRRAEGG----GGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGD
        Q  SSLKR+R + G     GGAL+ QEK L+DLICSKQSMGI TFDMKRET  A+SVVTK+LKSLQ KGLIK+VQHYQNK +KFY+S DFEP+KELTGG+
Subjt:  QASSSLKRRRAEGG----GGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGD

Query:  WYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGA-KGEP
        WY+DG LD +YINTLK VC RMIQR K++ I+GIVE+FK+SGA KVELS  QI+EIVNALVLD++VME+KS+G  EF F P+G I YK+C + G  KGEP
Subjt:  WYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGA-KGEP

Query:  IIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF
         IGAMASIPCGVCPRIT C P G ISP TCVYYTKWLDF
Subjt:  IIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF

A0A5A7UBI4 DNA-directed RNA polymerase III subunit RPC6-like2.8e-8969.75Show/hide
Query:  QASSSLKRRR----AEGGGGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGD
        Q  SSLKR+R     +    GAL+ QEK L+DLICSKQSMGI TFDMKRET  A+SVVTK+LKSLQ KGLIK+VQHYQNK +KFY+S DFEP+KELTGG+
Subjt:  QASSSLKRRR----AEGGGGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGD

Query:  WYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPI
        WY+DG LD +YINTLK VC RMIQR K++ I+GIVE+FK+SGA KVEL+  QI+EIVNALVLD++V E+KS+G  EF F P+G I YK+C + G KGEP 
Subjt:  WYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPI

Query:  IGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF
         GAMASIPCGVCPRIT C P G ISP TCVYYTKWLDF
Subjt:  IGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF

A0A5D3CS47 DNA-directed RNA polymerase III subunit RPC6-like2.8e-8969.75Show/hide
Query:  QASSSLKRRR----AEGGGGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGD
        Q  SSLKR+R     +    GAL+ QEK L+DLICSKQSMGI TFDMKRET  A+SVVTK+LKSLQ KGLIK+VQHYQNK +KFY+S DFEP+KELTGG+
Subjt:  QASSSLKRRR----AEGGGGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGD

Query:  WYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPI
        WY+DG LD +YINTLK VC RMIQR K++ I+GIVE+FK+SGA KVEL+  QI+EIVNALVLD++V E+KS+G  EF F P+G I YK+C + G KGEP 
Subjt:  WYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPI

Query:  IGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF
         GAMASIPCGVCPRIT C P G ISP TCVYYTKWLDF
Subjt:  IGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF

A0A5D3D7H7 DNA-directed RNA polymerase III subunit rpc6-like1.1e-9071.55Show/hide
Query:  QASSSLKRRRAEGG----GGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGD
        Q  SSLKR+R + G     GGAL+ QEK L+DLICSKQSMGI TFDMKRET  A+SVVTK+LKSLQ KGLIK+VQHYQNK +KFY+S DFEP+KELTGG+
Subjt:  QASSSLKRRRAEGG----GGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGD

Query:  WYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGA-KGEP
        WY+DG LD +YINTLK VC RMIQR K++ I+GIVE+FK+SGA KVELS  QI+EIVNALVLD++VME+KS+G  EF F P+G I YK+C + G  KGEP
Subjt:  WYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGA-KGEP

Query:  IIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF
         IGAMASIPCGVCPRIT C P G ISP TCVYYTKWLDF
Subjt:  IIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF

SwissProt top hitse value%identityAlignment
Q2T9S3 DNA-directed RNA polymerase III subunit RPC64.8e-2230.77Show/hide
Query:  DQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCVR---
        +QEK ++ +I    + GI + D++ ++N+  + + K LK+L+ K LIK V+      +K YM  + +P + +TGG WY D + ++E++  L   C +   
Subjt:  DQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCVR---

Query:  -------------MIQRSKIIAIDGIV-EAFKKSGATKVELSNGQIQEIVNALVLDHEV-MEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPII--GAM
                     MIQR+   A    V +   + G +KVELS   I+ I+N L+ D +V M I +            M  Y+          PII    +
Subjt:  -------------MIQRSKIIAIDGIV-EAFKKSGATKVELSNGQIQEIVNALVLDHEV-MEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPII--GAM

Query:  ASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF
           PCG+CP   DC   G ISP  C+Y T+WL+F
Subjt:  ASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF

Q86JM3 DNA-directed RNA polymerase III subunit rpc61.7e-1927.14Show/hide
Query:  LHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCVRMIQRSKII
        ++ LI +  + G  T ++K  +      +TK LK+L+ + LIK V+  Q+  +K YM  + EPS+E+TGG  Y D + D +YI  +K      +     +
Subjt:  LHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCVRMIQRSKII

Query:  AIDGIVEAFKK--SGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPIIGAMASIPCGVCPRITDCAPTGSISPL
         +  I+   +K    AT   L    IQ +VN ++ D ++ E++            G+++      +  K    +    ++PCG CP    C+  G +SP 
Subjt:  AIDGIVEAFKK--SGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPIIGAMASIPCGVCPRITDCAPTGSISPL

Query:  TCVYYTKWLD
         CVY+ ++L+
Subjt:  TCVYYTKWLD

Q921X6 DNA-directed RNA polymerase III subunit RPC61.8e-2128.63Show/hide
Query:  DQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCVRMIQ
        +QEK ++ +I    + GI + D++ ++N+  + + K LK+L+ K LIK V+      +K YM  + +P + +TGG WY D + ++E++  L   C + +Q
Subjt:  DQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCVRMIQ

Query:  -----------------RSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEV-MEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPII--GAM
                          S   +   + +   + G +KVELS   I+ I+N L+ D +V M I +            M  Y+          PI+    +
Subjt:  -----------------RSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEV-MEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPII--GAM

Query:  ASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF
           PCG+CP   DC   G ISP  C+Y T+WL+F
Subjt:  ASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF

Q9H1D9 DNA-directed RNA polymerase III subunit RPC64.8e-2230.77Show/hide
Query:  DQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCVR---
        +QEK ++ +I    + GI + D++ ++N+  + + K LK+L+ K LIK V+      +K YM  + +P + +TGG WY D + ++E++  L   C +   
Subjt:  DQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCVR---

Query:  -------------MIQRSKIIAIDGIV-EAFKKSGATKVELSNGQIQEIVNALVLDHEV-MEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPII--GAM
                     MIQR+   A    V +   + G +KVELS   I+ I+N L+ D +V M I +            M  Y+          PII    +
Subjt:  -------------MIQRSKIIAIDGIV-EAFKKSGATKVELSNGQIQEIVNALVLDHEV-MEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPII--GAM

Query:  ASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF
           PCG+CP   DC   G ISP  C+Y T+WL+F
Subjt:  ASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF

Q9VD25 Probable DNA-directed RNA polymerase III subunit RPC61.0e-1926.41Show/hide
Query:  DQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCVRMIQ
        ++EK ++ ++    + GI   D++ ++N+    + K LK+L+ K LIK V+      +K YM  + EP   +TGG WYQD + + E+++ L   C+R +Q
Subjt:  DQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCVRMIQ

Query:  RSKIIA-----------------IDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPI-IGAMAS
          +  A                 ++ + +     G +KV L+   ++ I+  +V D         G AE      G   Y+      A   P+    +  
Subjt:  RSKIIA-----------------IDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPI-IGAMAS

Query:  IPCGVCPRITDCAPTGSISPLTCVYYTKWLD
        +PCG+CP I +C+  G ++ +TC Y   WLD
Subjt:  IPCGVCPRITDCAPTGSISPLTCVYYTKWLD

Arabidopsis top hitse value%identityAlignment
AT5G23710.1 DNA binding;DNA-directed RNA polymerases1.6e-4944.64Show/hide
Query:  SSLKRRRAEGGGGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNL
        S  KR   +  GG      EKKL DLI   Q  G T F++KRE  I  ++VT+ + SL+ K LIK V +  NK  K Y++ +FEP  ELTGG+WY DG L
Subjt:  SSLKRRRAEGGGGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNL

Query:  DTEYINTLKGVCVRMIQ--RSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPIIGAMA
        D   I  LK  CV +++  R +++ ++ +   F K    + +LS  Q +EI+  L+LD+ +ME+KSNG  EF  + +G + Y+   K+   GEP  GA A
Subjt:  DTEYINTLKGVCVRMIQ--RSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPIIGAMA

Query:  SIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF
        SIPCGVCP I  C+P G ISP TCVY+ KWLDF
Subjt:  SIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGACAAGCCTCTTCATCATTAAAAAGAAGAAGGGCAGAAGGAGGAGGAGGAGGAGCTCTACTTGATCAAGAAAAAAAGCTCCATGACCTGATTTGCAGCAAGCA
AAGCATGGGAATTACCACATTCGACATGAAAAGAGAAACCAACATTGCTGATAGTGTAGTAACTAAAGCACTCAAGTCCCTTCAACTCAAAGGCCTGATCAAAGTGGTTC
AACACTACCAGAACAAGTCGAGGAAATTCTACATGTCGAAGGACTTCGAACCGTCGAAAGAACTAACCGGAGGGGACTGGTACCAGGACGGGAATCTCGACACCGAGTAT
ATCAACACTCTCAAGGGGGTGTGTGTGAGAATGATACAGAGGAGCAAGATTATCGCCATTGATGGAATTGTGGAGGCTTTCAAGAAGAGTGGGGCTACTAAAGTGGAGCT
GTCTAATGGGCAAATTCAAGAGATTGTAAATGCTTTGGTGTTGGACCATGAAGTAATGGAAATAAAGAGCAATGGAACTGCAGAATTTAATTTTTCGCCAGTTGGGATGA
TTTTTTATAAGTTTTGTCCTAAAAGAGGGGCTAAAGGTGAACCCATAATAGGCGCAATGGCTTCTATTCCTTGTGGAGTTTGTCCAAGGATTACTGATTGTGCACCAACT
GGCAGCATTTCGCCCCTCACTTGTGTGTATTACACCAAGTGGTTAGATTTTTAA
mRNA sequenceShow/hide mRNA sequence
GAAAATAAAAGAAAAAAGAACAATCCCCTAAACCTCTTCCCCTCTCTCTCTCTCTCTCCCTTTAACCGCCGCCGATCTTCCGCCGCCGCCCGCCACCGTCGCCTTCTGCA
GAAAAATGAGCAGACAAGCCTCTTCATCATTAAAAAGAAGAAGGGCAGAAGGAGGAGGAGGAGGAGCTCTACTTGATCAAGAAAAAAAGCTCCATGACCTGATTTGCAGC
AAGCAAAGCATGGGAATTACCACATTCGACATGAAAAGAGAAACCAACATTGCTGATAGTGTAGTAACTAAAGCACTCAAGTCCCTTCAACTCAAAGGCCTGATCAAAGT
GGTTCAACACTACCAGAACAAGTCGAGGAAATTCTACATGTCGAAGGACTTCGAACCGTCGAAAGAACTAACCGGAGGGGACTGGTACCAGGACGGGAATCTCGACACCG
AGTATATCAACACTCTCAAGGGGGTGTGTGTGAGAATGATACAGAGGAGCAAGATTATCGCCATTGATGGAATTGTGGAGGCTTTCAAGAAGAGTGGGGCTACTAAAGTG
GAGCTGTCTAATGGGCAAATTCAAGAGATTGTAAATGCTTTGGTGTTGGACCATGAAGTAATGGAAATAAAGAGCAATGGAACTGCAGAATTTAATTTTTCGCCAGTTGG
GATGATTTTTTATAAGTTTTGTCCTAAAAGAGGGGCTAAAGGTGAACCCATAATAGGCGCAATGGCTTCTATTCCTTGTGGAGTTTGTCCAAGGATTACTGATTGTGCAC
CAACTGGCAGCATTTCGCCCCTCACTTGTGTGTATTACACCAAGTGGTTAGATTTTTAATTTATATTTTTTTACACAATACTTGGATATTATTATTATTATTTATTTTTT
TGTCGTTCCATAAATATTTGAACATTTGGTTTTTTTTTAAAAAACACTTGAGGTGGGAATTTGAACTCCTAATCTCTCCTTTGTTAGATTATACACCATGCTACTGGATT
TTTTTGGTTTCCTCAGTTCTAGTCTATCACATGCACCGGAG
Protein sequenceShow/hide protein sequence
MSRQASSSLKRRRAEGGGGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEY
INTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPIIGAMASIPCGVCPRITDCAPT
GSISPLTCVYYTKWLDF