; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0000715 (gene) of Chayote v1 genome

Gene IDSed0000715
OrganismSechium edule (Chayote v1)
DescriptionMediator of RNA polymerase II transcription subunit 13, putative
Genome locationLG01:11795375..11795864
RNA-Seq ExpressionSed0000715
SyntenySed0000715
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008438871.1 PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo]1.1e-4170.37Show/hide
Query:  MKNKKKKPEVEDDDSHLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPAP--PWDFAHSLWDSYEIVTLSKKLDTGLVLDRDG
        MK K    ++ D D HLEILKAVAQAW +HTGTS PASEFDAHRRNSRP+PSRFK+EAIR+R++      WDFA SLWDSYEIVT+SKKL+ GLVLD DG
Subjt:  MKNKKKKPEVEDDDSHLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPAP--PWDFAHSLWDSYEIVTLSKKLDTGLVLDRDG

Query:  FRDA---GAAAHRKRRESCNSLRNLFNLASSKRCN
        FR+A   G  + RKRRESCNSLRNLFN ASS+R N
Subjt:  FRDA---GAAAHRKRRESCNSLRNLFNLASSKRCN

XP_011651756.1 uncharacterized protein LOC105434938 [Cucumis sativus]2.7e-4373.33Show/hide
Query:  MKNKKKKPEVEDDDSHLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPAPP--WDFAHSLWDSYEIVTLSKKLDTGLVLDRDG
        MK K    ++ DDD HLEILKAVAQAW SHTGTS PASEFDAHRRNSRP PSRFKIEAIR+R+S      WDFA SLWDSYEIVT+SKKL+ GLVLD DG
Subjt:  MKNKKKKPEVEDDDSHLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPAPP--WDFAHSLWDSYEIVTLSKKLDTGLVLDRDG

Query:  FRDA---GAAAHRKRRESCNSLRNLFNLASSKRCN
        FR+A   G  + RKRRESCNSLRNLFN ASS+R N
Subjt:  FRDA---GAAAHRKRRESCNSLRNLFNLASSKRCN

XP_022923731.1 uncharacterized protein LOC111431350 [Cucurbita moschata]1.2e-4073.23Show/hide
Query:  KKKPEVEDDDSHLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPA--PPWDFAHSLWDSYEIVTLSKKLDTGLVLDRDGFR--
        K KP VED+D HLEILKAVAQAWQSHTGTS PASEFDAHRRN R +PSRFK+EAIR+RSS      WDF  SLWDSYEIV +SKKL+TGLVLD DGFR  
Subjt:  KKKPEVEDDDSHLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPA--PPWDFAHSLWDSYEIVTLSKKLDTGLVLDRDGFR--

Query:  DAGAAAHRKRRESCNSLRNLFNLASSK
        D G    RK+RESCNSLRNLFN  S +
Subjt:  DAGAAAHRKRRESCNSLRNLFNLASSK

XP_023519325.1 uncharacterized protein LOC111782756 [Cucurbita pepo subsp. pepo]1.2e-4073.23Show/hide
Query:  KKKPEVEDDDSHLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPA--PPWDFAHSLWDSYEIVTLSKKLDTGLVLDRDGFRDA
        K KP VED+D HLEILKAVAQAWQSHTGTS PASEFDAHRRN R +PSRFK+EAIR+RSS      WDF  SLWDSYEIV +SKKL+TGLVLD DGFR+A
Subjt:  KKKPEVEDDDSHLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPA--PPWDFAHSLWDSYEIVTLSKKLDTGLVLDRDGFRDA

Query:  --GAAAHRKRRESCNSLRNLFNLASSK
          G    RK+RESCNSLRNLFN  S +
Subjt:  --GAAAHRKRRESCNSLRNLFNLASSK

XP_038894267.1 uncharacterized protein LOC120082919 [Benincasa hispida]1.6e-4374.24Show/hide
Query:  KKKPEVEDDDS--HLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPAP-PWDFAHSLWDSYEIVTLSKKLDTGLVLDRDGFRD
        KKKPE++DDD   HLEILKAVAQAW SHTG+S PASEFDAHRRNSRP+PSRFK+EAIRTRSS +   WDF  SLWDSYEIVT+SKKL+ GLVLDRDGFR+
Subjt:  KKKPEVEDDDS--HLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPAP-PWDFAHSLWDSYEIVTLSKKLDTGLVLDRDGFRD

Query:  ---AGAAAHRKRRESCNSLRNLFNLASSKRCN
            G  + RK+RESCNSLRNLF+ ASS+R N
Subjt:  ---AGAAAHRKRRESCNSLRNLFNLASSKRCN

TrEMBL top hitse value%identityAlignment
A0A0A0LTM3 Uncharacterized protein1.3e-4373.33Show/hide
Query:  MKNKKKKPEVEDDDSHLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPAPP--WDFAHSLWDSYEIVTLSKKLDTGLVLDRDG
        MK K    ++ DDD HLEILKAVAQAW SHTGTS PASEFDAHRRNSRP PSRFKIEAIR+R+S      WDFA SLWDSYEIVT+SKKL+ GLVLD DG
Subjt:  MKNKKKKPEVEDDDSHLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPAPP--WDFAHSLWDSYEIVTLSKKLDTGLVLDRDG

Query:  FRDA---GAAAHRKRRESCNSLRNLFNLASSKRCN
        FR+A   G  + RKRRESCNSLRNLFN ASS+R N
Subjt:  FRDA---GAAAHRKRRESCNSLRNLFNLASSKRCN

A0A1S3AX17 uncharacterized protein LOC1034838295.4e-4270.37Show/hide
Query:  MKNKKKKPEVEDDDSHLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPAP--PWDFAHSLWDSYEIVTLSKKLDTGLVLDRDG
        MK K    ++ D D HLEILKAVAQAW +HTGTS PASEFDAHRRNSRP+PSRFK+EAIR+R++      WDFA SLWDSYEIVT+SKKL+ GLVLD DG
Subjt:  MKNKKKKPEVEDDDSHLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPAP--PWDFAHSLWDSYEIVTLSKKLDTGLVLDRDG

Query:  FRDA---GAAAHRKRRESCNSLRNLFNLASSKRCN
        FR+A   G  + RKRRESCNSLRNLFN ASS+R N
Subjt:  FRDA---GAAAHRKRRESCNSLRNLFNLASSKRCN

A0A5A7UNW1 Uncharacterized protein5.4e-4270.37Show/hide
Query:  MKNKKKKPEVEDDDSHLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPAP--PWDFAHSLWDSYEIVTLSKKLDTGLVLDRDG
        MK K    ++ D D HLEILKAVAQAW +HTGTS PASEFDAHRRNSRP+PSRFK+EAIR+R++      WDFA SLWDSYEIVT+SKKL+ GLVLD DG
Subjt:  MKNKKKKPEVEDDDSHLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPAP--PWDFAHSLWDSYEIVTLSKKLDTGLVLDRDG

Query:  FRDA---GAAAHRKRRESCNSLRNLFNLASSKRCN
        FR+A   G  + RKRRESCNSLRNLFN ASS+R N
Subjt:  FRDA---GAAAHRKRRESCNSLRNLFNLASSKRCN

A0A6J1E7J5 uncharacterized protein LOC1114313506.0e-4173.23Show/hide
Query:  KKKPEVEDDDSHLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPA--PPWDFAHSLWDSYEIVTLSKKLDTGLVLDRDGFR--
        K KP VED+D HLEILKAVAQAWQSHTGTS PASEFDAHRRN R +PSRFK+EAIR+RSS      WDF  SLWDSYEIV +SKKL+TGLVLD DGFR  
Subjt:  KKKPEVEDDDSHLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPA--PPWDFAHSLWDSYEIVTLSKKLDTGLVLDRDGFR--

Query:  DAGAAAHRKRRESCNSLRNLFNLASSK
        D G    RK+RESCNSLRNLFN  S +
Subjt:  DAGAAAHRKRRESCNSLRNLFNLASSK

A0A6J1KNC1 uncharacterized protein LOC1114957276.6e-4072.44Show/hide
Query:  KKKPEVEDDDSHLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPA--PPWDFAHSLWDSYEIVTLSKKLDTGLVLDRDGFR--
        K K  VED+D HLEILKAVAQAWQSHTGTS PASEFDAHRRN R +PSRFK+EAIR+RSS A    WDF  SLWDSYEIV +SKKL+ GLVLD DGFR  
Subjt:  KKKPEVEDDDSHLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPA--PPWDFAHSLWDSYEIVTLSKKLDTGLVLDRDGFR--

Query:  DAGAAAHRKRRESCNSLRNLFNLASSK
        D G    RK+RESCNSLRNLFN  S +
Subjt:  DAGAAAHRKRRESCNSLRNLFNLASSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G24700.1 unknown protein9.2e-1841.35Show/hide
Query:  KKKPEVEDDDSHLEILKAVAQAWQSHTGTS-NPASEFDAHRRNS--RPSPSRFKIEAIRTRSSPA-PPWDFAHSLWDSYEIVTLSKKLDTGLVLDRDGFR
        + + E E+    LE++KA AQAW SH+ TS +   EFDA R+++  +   SRFK EA+  +  P+   W+F  SLWD YEI+++SKKL+  L L+   F 
Subjt:  KKKPEVEDDDSHLEILKAVAQAWQSHTGTS-NPASEFDAHRRNS--RPSPSRFKIEAIRTRSSPA-PPWDFAHSLWDSYEIVTLSKKLDTGLVLDRDGFR

Query:  DAG-----AAAHRKRRESCNSLRNLFNLASSKR
         +          +K R+S NSLR+LF  +SSKR
Subjt:  DAG-----AAAHRKRRESCNSLRNLFNLASSKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAACAAGAAGAAGAAACCAGAGGTTGAAGACGACGATTCCCATCTCGAAATCCTGAAGGCGGTGGCGCAGGCTTGGCAGAGCCACACCGGCACTTCCAACCCCGC
ATCTGAATTCGACGCCCATCGCCGGAATTCCAGACCCAGCCCCTCCCGCTTCAAGATCGAGGCCATCCGGACCCGCTCTTCCCCCGCCCCCCCATGGGACTTCGCCCACT
CCCTTTGGGACTCCTACGAGATCGTCACCCTCTCCAAAAAGCTCGACACTGGGCTCGTGCTCGACCGCGATGGCTTTCGAGACGCCGGCGCCGCTGCCCACCGCAAACGC
CGCGAGAGTTGTAATAGCTTGAGGAATTTGTTCAATTTGGCTTCTTCCAAGAGATGTAATTCGAATTAG
mRNA sequenceShow/hide mRNA sequence
GTTTGGTCTGATTGGCGCACAGGATAAACATACGCCCCCATTCCAATCCAATCCAACTCTCAGTAGACAACAACACCAATGAAGAACAAGAAGAAGAAACCAGAGGTTGA
AGACGACGATTCCCATCTCGAAATCCTGAAGGCGGTGGCGCAGGCTTGGCAGAGCCACACCGGCACTTCCAACCCCGCATCTGAATTCGACGCCCATCGCCGGAATTCCA
GACCCAGCCCCTCCCGCTTCAAGATCGAGGCCATCCGGACCCGCTCTTCCCCCGCCCCCCCATGGGACTTCGCCCACTCCCTTTGGGACTCCTACGAGATCGTCACCCTC
TCCAAAAAGCTCGACACTGGGCTCGTGCTCGACCGCGATGGCTTTCGAGACGCCGGCGCCGCTGCCCACCGCAAACGCCGCGAGAGTTGTAATAGCTTGAGGAATTTGTT
CAATTTGGCTTCTTCCAAGAGATGTAATTCGAATTAGTCTTTTGTTAAAT
Protein sequenceShow/hide protein sequence
MKNKKKKPEVEDDDSHLEILKAVAQAWQSHTGTSNPASEFDAHRRNSRPSPSRFKIEAIRTRSSPAPPWDFAHSLWDSYEIVTLSKKLDTGLVLDRDGFRDAGAAAHRKR
RESCNSLRNLFNLASSKRCNSN