CuGenDBv2

Gene ID	Sed0000723
Organism	Sechium edule (Chayote v1)
Description	Sigma factor binding protein 1
Genome location	LG07:39064165..39064812
RNA-Seq Expression	Sed0000723
Synteny	Sed0000723
Gene Ontology terms	GO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domains	IPR008889 - VQ IPR039335 - Sigma factor binding protein 1/2

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022957180.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]

1.8e-30

69.7

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Query:  MDFSGKKPRKRSRKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRSTNLQSPASAFLDCQFLGDDDL------LIDRKIEK
        MD  GKKP KR++KSAA FKVVYISSPMKVKTSASKFRSLVQKLTGQ+SDAESFMELI  AADR  N QS  SAFLD Q LGDD+L      L+  KIE 
Subjt:  MDFSGKKPRKRSRKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRSTNLQSPASAFLDCQFLGDDDL------LIDRKIEK

Query:  AAYQS-----PDDLVLQNFDASFAELCPWLFA
        AAYQS      DD VLQNFDASF E+    FA
Subjt:  AAYQS-----PDDLVLQNFDASFAELCPWLFA

XP_022986090.1 uncharacterized protein LOC111483942 [Cucurbita maxima]

2.0e-29

68.18

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Query:  MDFSGKKPRKRSRKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRSTNLQSPASAFLDCQFLGDDDL------LIDRKIEK
        MD  GKK  KR++KSAA+FKVVYISSPMKVKTSASKFRSLVQKLTGQ+SDAESF+ELI  A DR  N QS  SAFLD Q LGDD+L      L+  KIE 
Subjt:  MDFSGKKPRKRSRKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRSTNLQSPASAFLDCQFLGDDDL------LIDRKIEK

Query:  AAYQS-----PDDLVLQNFDASFAELCPWLFA
        AAYQS      DDLVLQNFDASF E+    FA
Subjt:  AAYQS-----PDDLVLQNFDASFAELCPWLFA

XP_023514832.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]

5.3e-30

68.94

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Query:  MDFSGKKPRKRSRKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRSTNLQSPASAFLDCQFLGDDDL------LIDRKIEK
        MD  GKKP KR++KSAA FKVVYISSPMKVKTSASKFRSLVQKLTGQ+SDAESFMELI  A DR  N QS  SAFLD Q LGDD+L      L+  KIE 
Subjt:  MDFSGKKPRKRSRKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRSTNLQSPASAFLDCQFLGDDDL------LIDRKIEK

Query:  AAYQS-----PDDLVLQNFDASFAELCPWLFA
        AAYQS      DD VLQNFDASF E+    FA
Subjt:  AAYQS-----PDDLVLQNFDASFAELCPWLFA

XP_023542375.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]

5.8e-29

68.46

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Query:  MDFSGKK-PRKRSRKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRS-TNLQS--PASAFLDCQFLGDDDL------LID
        MD + KK  ++RSRKS AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG +SDAE FMELI+AAA     NLQS   ASAFLD Q LGDDDL      L+ 
Subjt:  MDFSGKK-PRKRSRKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRS-TNLQS--PASAFLDCQFLGDDDL------LID

Query:  RKIEKAAYQS----PDDLVLQNFDASFAEL
         KIE AAYQS    P+DLV+QNFDASFAE+
Subjt:  RKIEKAAYQS----PDDLVLQNFDASFAEL

XP_038892750.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]

1.8e-30

73.02

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Query:  MDFSGKKPRKRSRKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELI-SAAADRSTNLQSPASA-FLDCQFLGDDDLLIDRKIEKAAY
        M+ +GKK  KRS+KS AA+FKVVYISSPMKVKTSASKFRSLVQKLTGQ+SDAE FMELI SAA+DR  NLQS ASA FLD Q LGDDDLL+  K+E AAY
Subjt:  MDFSGKKPRKRSRKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELI-SAAADRSTNLQSPASA-FLDCQFLGDDDLLIDRKIEKAAY

Query:  QSP-------DDL-VLQNFDASFAEL
        +S        DDL VLQNFDASFAE+
Subjt:  QSP-------DDL-VLQNFDASFAEL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1G190 sigma factor binding protein 1, chloroplastic-like

6.3e-29

67.69

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Query:  MDFSGKK-PRKRSRKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRS-TNLQS--PASAFLDCQFLGDDDL------LID
        MD + KK  ++RSRKS AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG +SDAE FMELI+AAA     NLQS   ASAFLD Q LGDDDL      L+ 
Subjt:  MDFSGKK-PRKRSRKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRS-TNLQS--PASAFLDCQFLGDDDL------LID

Query:  RKIEKAAYQS----PDDLVLQNFDASFAEL
         KIE AAYQS    P+DLV++NFDASFAE+
Subjt:  RKIEKAAYQS----PDDLVLQNFDASFAEL

A0A6J1GZT9 sigma factor binding protein 1, chloroplastic-like

8.8e-31

69.7

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Query:  MDFSGKKPRKRSRKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRSTNLQSPASAFLDCQFLGDDDL------LIDRKIEK
        MD  GKKP KR++KSAA FKVVYISSPMKVKTSASKFRSLVQKLTGQ+SDAESFMELI  AADR  N QS  SAFLD Q LGDD+L      L+  KIE 
Subjt:  MDFSGKKPRKRSRKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRSTNLQSPASAFLDCQFLGDDDL------LIDRKIEK

Query:  AAYQS-----PDDLVLQNFDASFAELCPWLFA
        AAYQS      DD VLQNFDASF E+    FA
Subjt:  AAYQS-----PDDLVLQNFDASFAELCPWLFA

A0A6J1HP65 sigma factor binding protein 1, chloroplastic-like

8.2e-29

67.69

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Query:  MDFSGK-KPRKRSRKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRS-TNLQS--PASAFLDCQFLGDDDL------LID
        MD + K + ++RSRKS AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG +SDAE FMELI+AAA     NLQS   ASAFLD Q LGDDDL      L+ 
Subjt:  MDFSGK-KPRKRSRKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRS-TNLQS--PASAFLDCQFLGDDDL------LID

Query:  RKIEKAAYQS----PDDLVLQNFDASFAEL
         KIE AAYQS    P+DLV+QNFDASFAE+
Subjt:  RKIEKAAYQS----PDDLVLQNFDASFAEL

A0A6J1JD32 uncharacterized protein LOC111483942

9.7e-30

68.18

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Query:  MDFSGKKPRKRSRKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRSTNLQSPASAFLDCQFLGDDDL------LIDRKIEK
        MD  GKK  KR++KSAA+FKVVYISSPMKVKTSASKFRSLVQKLTGQ+SDAESF+ELI  A DR  N QS  SAFLD Q LGDD+L      L+  KIE 
Subjt:  MDFSGKKPRKRSRKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRSTNLQSPASAFLDCQFLGDDDL------LIDRKIEK

Query:  AAYQS-----PDDLVLQNFDASFAELCPWLFA
        AAYQS      DDLVLQNFDASF E+    FA
Subjt:  AAYQS-----PDDLVLQNFDASFAELCPWLFA

D1MWZ4 Sigma factor binding protein 1

2.4e-28

70.73

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Query:  MDFSGKKPRKRSRKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMEL-ISAAADRSTNLQSPASA-FLDCQFLGDDDLLIDRKIEKAAY
        M+ +GKK  KRSRKS AADFKVVYISSPMKVKTSASKFRSLVQ+LTGQ+SDAE FMEL  SAA+DR  NLQS ASA F D Q LGDDDL++  K+E AAY
Subjt:  MDFSGKKPRKRSRKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMEL-ISAAADRSTNLQSPASA-FLDCQFLGDDDLLIDRKIEKAAY

Query:  QS-------PDDL-VLQNFDASF
        +S       PDDL VL N DASF
Subjt:  QS-------PDDL-VLQNFDASF

SwissProt top hits

e value

%identity

Alignment

Q9LDH1 Sigma factor binding protein 1, chloroplastic

4.0e-04

43.94

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Query:  KPRKRSRKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRSTNLQSPA
        K +K++  +    KV YIS+PM+V+T ASKFR LVQ+LTGQ++  +   E I + +    NL  PA
Subjt:  KPRKRSRKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRSTNLQSPA

Arabidopsis top hits

e value

%identity

Alignment

AT2G41180.1 VQ motif-containing protein

1.4e-04

55.56

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Query:  PRKRSRKSAA---DFKVVYISSPMKVKTSASKFRSLVQKLTGQNS
        P K+ RKS       KV YIS+PM+V+T  SKFR LVQ+LTGQ++
Subjt:  PRKRSRKSAA---DFKVVYISSPMKVKTSASKFRSLVQKLTGQNS

AT3G56710.1 sigma factor binding protein 1

2.8e-05

43.94

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Query:  KPRKRSRKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRSTNLQSPA
        K +K++  +    KV YIS+PM+V+T ASKFR LVQ+LTGQ++  +   E I + +    NL  PA
Subjt:  KPRKRSRKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRSTNLQSPA

Sequences

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CDS sequence

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ATGGATTTTTCCGGCAAGAAACCGCGGAAGAGGTCCAGGAAATCGGCGGCGGATTTCAAAGTCGTGTACATTTCCAGCCCGATGAAGGTCAAAACCAGCGCCTCCAAGTT
CCGATCTCTCGTCCAGAAACTCACCGGCCAGAACTCCGACGCCGAGAGCTTCATGGAACTCATCTCCGCCGCCGCTGATCGGAGTACTAATCTTCAATCGCCCGCGTCGG
CGTTCCTCGACTGCCAATTCCTCGGCGACGACGATTTATTAATTGATCGGAAGATCGAAAAGGCGGCGTATCAGTCGCCGGACGATTTGGTTTTGCAGAATTTTGATGCG
AGTTTTGCGGAATTGTGTCCATGGCTTTTTGCATGA

mRNA sequence

Show/hide mRNA sequence

GTCCCTTAGGGGACAGCATGCACAAAAAGAACCATCCATTGCTTCATTTTCATCAGCAATTTCCCCTTTCTCATTACAATTAATCCCCCAAACAAACGCACACTTTCCCG
GAAACTACCCTTGTTTGGTTCGCAAGAAAATTTCTCCCCTCCCCCTTATATAAATCCAATCCAATCCAATCCAATCCACCACTGTACCTTCACTTTTCCGATGGATTTTT
CCGGCAAGAAACCGCGGAAGAGGTCCAGGAAATCGGCGGCGGATTTCAAAGTCGTGTACATTTCCAGCCCGATGAAGGTCAAAACCAGCGCCTCCAAGTTCCGATCTCTC
GTCCAGAAACTCACCGGCCAGAACTCCGACGCCGAGAGCTTCATGGAACTCATCTCCGCCGCCGCTGATCGGAGTACTAATCTTCAATCGCCCGCGTCGGCGTTCCTCGA
CTGCCAATTCCTCGGCGACGACGATTTATTAATTGATCGGAAGATCGAAAAGGCGGCGTATCAGTCGCCGGACGATTTGGTTTTGCAGAATTTTGATGCGAGTTTTGCGG
AATTGTGTCCATGGCTTTTTGCATGAATCTTCTGCCCTAACTGATTTGCCAGGTTTAAGCGCACTATTGTAGATTCGGCGTACCATATAGTTTCTCCA

Protein sequence

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MDFSGKKPRKRSRKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQNSDAESFMELISAAADRSTNLQSPASAFLDCQFLGDDDLLIDRKIEKAAYQSPDDLVLQNFDA
SFAELCPWLFA

Sed0000723 (gene) of Chayote v1 genome