CuGenDBv2

Gene ID	Sed0000854
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Genome location	LG04:41131597..41133125
RNA-Seq Expression	Sed0000854
Synteny	Sed0000854
Gene Ontology terms	GO:0016567 - protein ubiquitination (biological process) GO:1904294 - positive regulation of ERAD pathway (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0046872 - metal ion binding (molecular function) GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domains	IPR044235 - RING finger and transmembrane domain-containing protein 1/2

Homology

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GenBank top hits

e value

%identity

Alignment

KAF7830844.1 E3 ubiquitin-protein ligase RNFT1-like [Senna tora]

6.1e-35

88.51

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Query:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR
        DT+VRQAAM+FKC LLIYY NG GHSFR  GQILTLVEYTLLLYRALLPTPVWYRFFLNKD GSLFSSLTTGLYLTFKL+SVVEKV+
Subjt:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR

KAG5036002.1 hypothetical protein JHK87_010912 [Glycine soja]

1.4e-34

87.36

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Query:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR
        DT+VRQAAMAFKC LLIYY NG GH+FR  GQ+LTLVEYTLLLYRALLPTPVWYRFFLNKD GSLFSSLTTGLYLTFKL+SVVEKV+
Subjt:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR

TKY73967.1 RING finger and transmembrane domain-containing protein 2 [Spatholobus suberectus]

1.4e-34

87.36

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Query:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR
        DT+VRQAAMAFKC LLIYY NG GH+FR  GQ+LTLVEYTLLLYRALLPTPVWYRFFLNKD GSLFSSLTTGLYLTFKL+SVVEKV+
Subjt:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR

XP_003523294.1 E3 ubiquitin-protein ligase RNFT1 isoform X2 [Glycine max]

1.4e-34

87.36

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Query:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR
        DT+VRQAAMAFKC LLIYY NG GH+FR  GQ+LTLVEYTLLLYRALLPTPVWYRFFLNKD GSLFSSLTTGLYLTFKL+SVVEKV+
Subjt:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR

XP_028229825.1 E3 ubiquitin-protein ligase RNFT1-like [Glycine soja]

1.4e-34

87.36

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Query:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR
        DT+VRQAAMAFKC LLIYY NG GH+FR  GQ+LTLVEYTLLLYRALLPTPVWYRFFLNKD GSLFSSLTTGLYLTFKL+SVVEKV+
Subjt:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR

TrEMBL top hits

e value

%identity

Alignment

A0A445L3V1 RING finger and transmembrane domain-containing protein 2

6.6e-35

87.36

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Query:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR
        DT+VRQAAMAFKC LLIYY NG GH+FR  GQ+LTLVEYTLLLYRALLPTPVWYRFFLNKD GSLFSSLTTGLYLTFKL+SVVEKV+
Subjt:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR

A0A5A7VG27 RING finger and transmembrane domain-containing protein 1-like

8.6e-35

87.36

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Query:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR
        DTMVRQ AMA KC LLIYY NG GH+FR  GQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKL+SVVEK++
Subjt:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR

A0A5D3DSS9 RING finger and transmembrane domain-containing protein 1-like

8.6e-35

87.36

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Query:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR
        DTMVRQ AMA KC LLIYY NG GH+FR  GQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKL+SVVEK++
Subjt:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR

I1KB54 RING-type domain-containing protein

8.6e-35

86.21

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Query:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR
        DT+VRQAAMAFKC LLIYY NG GH+FR  GQ+LTL+EYTLLLYRALLPTPVWYRFFLNKD GSLFSSLTTGLYLTFKL+SVVEKV+
Subjt:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR

K7KLP9 RING-type domain-containing protein

6.6e-35

87.36

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Query:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR
        DT+VRQAAMAFKC LLIYY NG GH+FR  GQ+LTLVEYTLLLYRALLPTPVWYRFFLNKD GSLFSSLTTGLYLTFKL+SVVEKV+
Subjt:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G01960.1 RING/U-box superfamily protein

1.6e-33

75.86

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Query:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR
        DT+VRQA+M FKC LL+YY N  G ++R  GQ+LTLVEY +LLYR+LLPTPVWYRFFLNKD GSLFSSL TGLYLTFKL+SVVEKV+
Subjt:  DTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVR

Sequences

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CDS sequence

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ATGCCAGATACGATGGTGAGGCAGGCTGCAATGGCGTTCAAATGTTCTCTTCTTATTTACTACAACAATGGCGGAGGCCATAGTTTTCGTCCGCACGGTCAAATTTTAAC
ACTTGTTGAATACACTCTTCTGTTGTACCGTGCATTATTACCAACACCTGTGTGGTATCGGTTCTTCTTGAACAAAGATCAAGGGAGCCTTTTTTCATCACTGACAACAG
GGTTATATTTAACATTCAAGCTTTCGTCTGTTGTTGAGAAGGTTCGAAAGAGAAAGAACTTGCCCTCTTTGCCGGGCACTGATAAAGCCTGCAGAACTTCGAACATTTGG
CGACGGGTCAACCAGCTTACTCTTCCAGATTTTTTAGACAGAAGAAATCCAGTTCTTGACATAACAGCTCTATCAGCTCAACACAGAAAGAAATCATTTTTTAGGATGGA
AACAGGGAAAAAATCACAGGCAGAAAAAGAAGAGATTGAAAAAGGAAAACAAAACATCCAGGTGAGGTTCAAGATGTCTAATTCTAAATTGGAATAG

mRNA sequence

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Protein sequence

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MPDTMVRQAAMAFKCSLLIYYNNGGGHSFRPHGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLSSVVEKVRKRKNLPSLPGTDKACRTSNIW
RRVNQLTLPDFLDRRNPVLDITALSAQHRKKSFFRMETGKKSQAEKEEIEKGKQNIQVRFKMSNSKLE

Sed0000854 (gene) of Chayote v1 genome