CuGenDBv2

Gene ID	Sed0000899
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerase II subunit RPB2
Genome location	LG01:69595497..69597914
RNA-Seq Expression	Sed0000899
Synteny	Sed0000899
Gene Ontology terms	GO:0032774 - RNA biosynthetic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022156252.1 uncharacterized protein LOC111023182 [Momordica charantia]

3.2e-19

96.3

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Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGD+I+DLRRGSSNSDSS
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS

XP_022931780.1 uncharacterized protein LOC111438056 [Cucurbita moschata]

4.6e-18

92.59

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Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGD+I+DLRRGSSN  SS
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS

XP_022973256.1 uncharacterized protein LOC111471813 [Cucurbita maxima]

4.6e-18

92.59

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Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGD+I+DLRRGSSN  SS
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS

XP_023553989.1 uncharacterized protein LOC111811404 [Cucurbita pepo subsp. pepo]

1.2e-18

94.44

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Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGD+I+DLRRGSS+SDSS
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS

XP_038888236.1 uncharacterized protein LOC120078095 [Benincasa hispida]

2.7e-18

94.44

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Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGD+I DLRRG+SNSDSS
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E6G4 uncharacterized protein LOC103503490

2.5e-17

90.74

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Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS
        M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGD+I+DLRRG S SDSS
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS

A0A5A7TAA3 Putative membrane lipoprotein

2.5e-17

90.74

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Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS
        M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGD+I+DLRRG S SDSS
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS

A0A6J1DRK3 uncharacterized protein LOC111023182

1.5e-19

96.3

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Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGD+I+DLRRGSSNSDSS
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS

A0A6J1F0E3 uncharacterized protein LOC111438056

2.2e-18

92.59

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Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGD+I+DLRRGSSN  SS
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS

A0A6J1I859 uncharacterized protein LOC111471813

2.2e-18

92.59

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Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGD+I+DLRRGSSN  SS
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G17085.1 Putative membrane lipoprotein

1.4e-17

74.07

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Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS
        M+KSF+LIQT+A +G FSA+S WYGFMFGRESARK+LG +IE+LRRG SNSDS+
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS

Sequences

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CDS sequence

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ATGGAGAAATCCTTCACTCTGATTCAGACCATTGCAACTGCTGGAGCTTTCTCTGCGATTTCTTTCTGGTACGGTTTCATGTTTGGAAGAGAATCGGCTCGAAAGGACTT
GGGAGATGTGATTGAAGATCTCCGCCGTGGAAGCTCCAACTCCGATTCTTCTTAA

mRNA sequence

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CATTCGGCGAAAACAAAACCAGAGGAATGTCCTGAATCGGGACTCAAATATTCGAGAAATTGAAAATGGAGAAATCCTTCACTCTGATTCAGACCATTGCAACTGCTGGA
GCTTTCTCTGCGATTTCTTTCTGGTACGGTTTCATGTTTGGAAGAGAATCGGCTCGAAAGGACTTGGGAGATGTGATTGAAGATCTCCGCCGTGGAAGCTCCAACTCCGA
TTCTTCTTAACCTGCCACTGTCACTAAAGCTTTTAGTTTTGGGGACATTGCGCCCCCAAACTCCCAAAACTGGGCGCTTGAAAGCGTGTGAAGGTTGATAGTTGAATATT
ATATATGTTTTTATGTATTATTCTTGGTTTAAACTTCATTTATGTTATTGAAAATTGTTTTTATTGTGCAAGTAAAAAAGTTCTTGCCTTTTTGTGCTCCCTTTTGTGCC
TCAAGCTGTAGATGGCCATTTTTCCTTAGTGTGCCTTGTACTTTTTAAAATGCCGGACACTTGTCTCCATCAAAAAGTTATAAAAACTATGCTGGATCGAGACAATCAAG
CTATACCAAATAGGATGAATTGGAACTTCGAAGTAGAACCGTTTTTCTTGGATGAAAGAGTGATTTCAATTTGATTTGATGATGGAATTTTACACTTATCATTTTCCCTT
ATTCAATTTTATGTTGTTTTAAATGGTTAGCTTGTATGTTCTTTGGCTGTCCTACAAACACTTGACTCGTTGGCTTCGTGAGTTTGGAATATGTTTGGTCACGTAGGACC
TGGTTTCTACTTGTGGTAAATTGATACTTGTTATATTTTATTTCTGAACATGGTTGAGTTTTCTTGGGGAGAATTCGAACTTATCACTTCTGAGTTATAAACTTATAAGC
ACACATCTTTGACGTTATATCAGTCGAATTATGCTCGGGTTAATCTTGCTCAAATTTTATGAACATGTATTTACTTTGAAAGATCATAATTTTTCTCTTAGTACTTTACA
TTTTCTCTTGACAAAGATGGCACCTTAGCCGGGTGTGATCTTTCCTCCTCCAGCATCGGACGTACGAACATTTCCCCTTTCAGAACTCGCATTACCTTTAGC

Protein sequence

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MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDVIEDLRRGSSNSDSS

Sed0000899 (gene) of Chayote v1 genome