CuGenDBv2

Gene ID	Sed0000903
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerase subunit alpha
Genome location	Contig00297:34415..35408
RNA-Seq Expression	Sed0000903
Synteny	Sed0000903
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR011260 - RNA polymerase, alpha subunit, C-terminal IPR011263 - DNA-directed RNA polymerase, RpoA/D/Rpb3-type IPR011773 - DNA-directed RNA polymerase, alpha subunit IPR036603 - RNA polymerase, RBP11-like subunit IPR036643 - DNA-directed RNA polymerase, insert domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QJA16176.1 RNA polymerase alpha subunit [Siraitia grosvenorii]

2.4e-145

82.58

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF
        YGTRDA                L  SVEI+DNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDA+FMPVRNANHSIHSY NGNEKQEILF
Subjt:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF

Query:  LEIWTNG----------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDL
        LEIWTNG                            KENFHLK NKQKVTLP+ TFHEKLAKLRKKK EIALKYIFIDQ ELPPRIYNCLKRSNIHTL DL
Subjt:  LEIWTNG----------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDL

Query:  LNNSPDELMKMKYFRIEDVKHILDILEMENNFL
        LNNSPDELMKMK+FRIEDVKHILDILEME NF+
Subjt:  LNNSPDELMKMKYFRIEDVKHILDILEMENNFL

YP_009752275.1 RNA polymerase subunit alpha [Trichosanthes baviensis]

1.8e-145

83.03

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF
        YGTRDA                L  SVEI+DNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYP+DAIFMPVRNANHSIHSY NGNEKQEILF
Subjt:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF

Query:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN
        LEIWTNG                          +ENFHLK NKQKVTLP+ TFHEKLAKLRKKK EIALKYIFIDQ ELPPRIYNCLKRSNIHTL DLLN
Subjt:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN

Query:  NSPDELMKMKYFRIEDVKHILDILEMENNF
        NSPDEL+KMKYFRIEDVKHILDILEMEN+F
Subjt:  NSPDELMKMKYFRIEDVKHILDILEMENNF

YP_009753206.1 RNA polymerase subunit alpha [Trichosanthes truncata]

8.2e-146

83.33

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF
        YGTRDA                L  SVEI+DNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYP+DAIFMPVRNANHSIHSY NGNEKQEILF
Subjt:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF

Query:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN
        LEIWTNG                          +ENFHLK NKQKVTLP+ TFHEKLAKLRKKK EIALKYIFIDQ ELPPRIYNCLKRSNIHTL DLLN
Subjt:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN

Query:  NSPDELMKMKYFRIEDVKHILDILEMENNF
        NSPDELMKMKYFRIEDVKHILDILEME NF
Subjt:  NSPDELMKMKYFRIEDVKHILDILEMENNF

YP_009753821.1 RNA polymerase subunit alpha [Trichosanthes pilosa]

6.3e-146

83.33

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF
        YGTRDA                L  SVEI+DNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYP+DAIFMPVRNANHSIHSY NGNEKQEILF
Subjt:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF

Query:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN
        LEIWTNG                          +ENFHLK NKQKVTLP+ TFHEKLAKLRKKK EIALKYIFIDQ ELPPRIYNCLKRSNIHTL DLLN
Subjt:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN

Query:  NSPDELMKMKYFRIEDVKHILDILEMENNF
        NSPDELMKMKYFRIEDVKHILDILEMEN+F
Subjt:  NSPDELMKMKYFRIEDVKHILDILEMENNF

YP_009945448.1 RNA polymerase alpha subunit [Sechium edule]

2.2e-151

86.4

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF
        YGTRDA                L  SVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF
Subjt:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF

Query:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN
        LEIWTNG                          +ENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN
Subjt:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN

Query:  NSPDELMKMKYFRIEDVKHILDILEMENNFL
        NSPDELMKMKYFRIEDVKHILDILEMENNFL
Subjt:  NSPDELMKMKYFRIEDVKHILDILEMENNFL

TrEMBL top hits

e value

%identity

Alignment

A0A6H0EQM3 DNA-directed RNA polymerase subunit alpha

1.1e-151

86.4

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF
        YGTRDA                L  SVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF
Subjt:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF

Query:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN
        LEIWTNG                          +ENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN
Subjt:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN

Query:  NSPDELMKMKYFRIEDVKHILDILEMENNFL
        NSPDELMKMKYFRIEDVKHILDILEMENNFL
Subjt:  NSPDELMKMKYFRIEDVKHILDILEMENNFL

A0A6H0ERT0 DNA-directed RNA polymerase subunit alpha

8.9e-146

83.03

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF
        YGTRDA                L  SVEI+DNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYP+DAIFMPVRNANHSIHSY NGNEKQEILF
Subjt:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF

Query:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN
        LEIWTNG                          +ENFHLK NKQKVTLP+ TFHEKLAKLRKKK EIALKYIFIDQ ELPPRIYNCLKRSNIHTL DLLN
Subjt:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN

Query:  NSPDELMKMKYFRIEDVKHILDILEMENNF
        NSPDEL+KMKYFRIEDVKHILDILEMEN+F
Subjt:  NSPDELMKMKYFRIEDVKHILDILEMENNF

A0A6H0EV18 DNA-directed RNA polymerase subunit alpha

3.0e-146

83.33

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF
        YGTRDA                L  SVEI+DNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYP+DAIFMPVRNANHSIHSY NGNEKQEILF
Subjt:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF

Query:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN
        LEIWTNG                          +ENFHLK NKQKVTLP+ TFHEKLAKLRKKK EIALKYIFIDQ ELPPRIYNCLKRSNIHTL DLLN
Subjt:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN

Query:  NSPDELMKMKYFRIEDVKHILDILEMENNF
        NSPDELMKMKYFRIEDVKHILDILEMEN+F
Subjt:  NSPDELMKMKYFRIEDVKHILDILEMENNF

A0A6H0EVC4 DNA-directed RNA polymerase subunit alpha

4.0e-146

83.33

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF
        YGTRDA                L  SVEI+DNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYP+DAIFMPVRNANHSIHSY NGNEKQEILF
Subjt:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF

Query:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN
        LEIWTNG                          +ENFHLK NKQKVTLP+ TFHEKLAKLRKKK EIALKYIFIDQ ELPPRIYNCLKRSNIHTL DLLN
Subjt:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN

Query:  NSPDELMKMKYFRIEDVKHILDILEMENNF
        NSPDELMKMKYFRIEDVKHILDILEME NF
Subjt:  NSPDELMKMKYFRIEDVKHILDILEMENNF

A0A6H1XKQ6 DNA-directed RNA polymerase subunit alpha

1.2e-145

82.58

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF
        YGTRDA                L  SVEI+DNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDA+FMPVRNANHSIHSY NGNEKQEILF
Subjt:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF

Query:  LEIWTNG----------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDL
        LEIWTNG                            KENFHLK NKQKVTLP+ TFHEKLAKLRKKK EIALKYIFIDQ ELPPRIYNCLKRSNIHTL DL
Subjt:  LEIWTNG----------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDL

Query:  LNNSPDELMKMKYFRIEDVKHILDILEMENNFL
        LNNSPDELMKMK+FRIEDVKHILDILEME NF+
Subjt:  LNNSPDELMKMKYFRIEDVKHILDILEMENNFL

SwissProt top hits

e value

%identity

Alignment

Q09G14 DNA-directed RNA polymerase subunit alpha

9.8e-126

72.31

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREK+ VSTRTL+WKCVESRADSKRLYYGRFILSPL+KGQADTIGIAMR+ALLGEIEGTCITRAKSEKIPHEYSTIVGI+ESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDAH-------HLTT-------SVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF
        YGTR+A        ++T        SVE +DNTQHIANLTEPI+ CIEL+IERNRGYR++TPNN QD SYPIDA+FMPVRNANHSIHSY NGNEKQEILF
Subjt:  YGTRDAH-------HLTT-------SVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF

Query:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN
        LEIWTNG                          +EN  L+ N+  VTLP  TFH++LAK+RK + EIALKYIFIDQ ELPPR YNCLKRSNIHTLLDL N
Subjt:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN

Query:  NSPDELMKMKYFRIEDVKHILDILE
        NS ++LMK++ FRIEDVK IL IL+
Subjt:  NSPDELMKMKYFRIEDVKHILDILE

Q2PMQ3 DNA-directed RNA polymerase subunit alpha

2.5e-129

72.59

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTL+WKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMR+ LLGEIEGTCITR KSEKIPHEYSTI+GI+ESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF
        YGTRDA                L  SVEI+DNTQHIAN+TEP+NLCIELKIERNRGYRI+T  NFQD SYPIDA FMPVRN NHSIHSY NGNEKQEILF
Subjt:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF

Query:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLA--KLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDL
        LEIWTNG                          ++NF+L+ N+ KVTLP+ TFH+ LA  KLRKKK EIALK IFIDQ ELPPRIYNCLKRSNIHTLL+L
Subjt:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLA--KLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDL

Query:  LNNSPDELMKMKYFRIEDVKHILDILEMENNF
        LNNS ++L+K+++FR+EDVK+ILD LE+E +F
Subjt:  LNNSPDELMKMKYFRIEDVKHILDILEMENNF

Q49KW6 DNA-directed RNA polymerase subunit alpha

1.4e-132

74.85

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREK+RVSTRTL+WKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCITRAK EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF
        YGTR+A                L TSVEI+DNTQ+IANLTEPINLCI L+IERNRGY I+TP NFQD SYPIDA+FMPVRNANHSIHSYGNGNEKQEILF
Subjt:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF

Query:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN
        LEIWTNG                          +EN HL+ N+ KVTLP  TFH++LAKLRK K EIALK IFIDQFELPPR YNCLKR NIHTL DLLN
Subjt:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN

Query:  NSPDELMKMKYFRIEDVKHILDILEMENNF
         S ++LMKM+YFRIEDVK ILD LE+E  F
Subjt:  NSPDELMKMKYFRIEDVKHILDILEMENNF

Q4VZK3 DNA-directed RNA polymerase subunit alpha

3.6e-144

80.72

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF
        YGTRDA                L  SVEI+DNTQHIANL EPINLCIELKIERNRGY IQTPNNFQDASYP+DAIFMPVRN NHSIHSY NGNEKQEILF
Subjt:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF

Query:  LEIWTNG----------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDL
        LEIWTNG                            KENFHLK NK+KVTLP+ TFHEKLAKLRKKK EIALKYIFIDQ ELPPRIYNCLKR NIHTL DL
Subjt:  LEIWTNG----------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDL

Query:  LNNSPDELMKMKYFRIEDVKHILDILEMENNF
        LNNSPDELMK+K+FRIEDVKHILDILEME NF
Subjt:  LNNSPDELMKMKYFRIEDVKHILDILEMENNF

Q9MTJ3 DNA-directed RNA polymerase subunit alpha

1.5e-126

73.03

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREK+RVSTRTL+WKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCITRAK EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF
        YGT +A                L  SVEIIDNTQHIA+L EPI+LCI L+IERNRGY I++PNNFQD SYPIDA+FMPVRNANHSIHSYGN NEKQEILF
Subjt:  YGTRDAH--------------HLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF

Query:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN
        LEIWTNG                          +EN HL  NK  VT P+ TFH+KLAKLRK K EIALK IFIDQ ELPPRIYN LK S IHTL DLLN
Subjt:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLN

Query:  NSPDELMKMKYFRIEDVKHILDILEMENNF
         S ++LMKMK+FRIEDVK ILDILE+E  F
Subjt:  NSPDELMKMKYFRIEDVKHILDILEMENNF

Arabidopsis top hits

e value

%identity

Alignment

ATCG00740.1 RNA polymerase subunit alpha

1.4e-122

69.11

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREK++VSTRTL+WKCVES+ DSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCITRAKSE IPH+YS I GIQESVHEILMNL EIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDA--------------HHLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF
        YGTR+A                L  +VEIIDNTQHIA LTEPI+LCIELKIERNRGY ++  NNF+D SYPIDA+FMPV NANHSIHSYGNGNEKQEILF
Subjt:  YGTRDA--------------HHLTTSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILF

Query:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKK--TEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDL
        LEIWTNG                          +E F+L+ N+ +VTLP   FH +L  LRKKK   E+A +YIFIDQ ELPPRIYNCLK+SNIHTLLDL
Subjt:  LEIWTNG--------------------------KENFHLKTNKQKVTLPILTFHEKLAKLRKKK--TEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDL

Query:  LNNSPDELMKMKYFRIEDVKHILDILE
        LNNS ++L+K+++F +EDVK ILDILE
Subjt:  LNNSPDELMKMKYFRIEDVKHILDILE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTTCGAGAGAAAATAAGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACT
TATGAAGGGTCAAGCCGATACTATAGGCATTGCGATGCGAAAAGCTTTGCTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATACCACATGAAT
ACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGTGATGCACATCATCTTACC
ACCTCTGTGGAAATCATTGATAATACACAGCATATAGCTAACCTAACGGAGCCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCGTATACAAAC
GCCAAATAATTTTCAAGACGCAAGTTATCCTATAGATGCTATATTCATGCCTGTTCGAAATGCGAATCATAGTATTCATTCTTATGGAAATGGGAATGAAAAACAAGAGA
TACTTTTTCTCGAAATATGGACCAATGGAAAAGAAAACTTCCATTTAAAAACCAATAAACAGAAAGTTACGTTACCTATTTTGACTTTTCATGAAAAATTGGCTAAACTA
AGGAAAAAGAAAACCGAAATAGCATTAAAATATATTTTTATTGACCAATTCGAATTGCCTCCTAGGATCTATAATTGCCTCAAAAGGTCCAATATACATACATTATTGGA
CCTTTTGAATAATAGTCCAGACGAACTTATGAAAATGAAATATTTTCGCATAGAAGACGTAAAACATATATTAGACATTCTCGAAATGGAAAATAATTTTCTATAA

mRNA sequence

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Protein sequence

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MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAHHLT
TSVEIIDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGKENFHLKTNKQKVTLPILTFHEKLAKL
RKKKTEIALKYIFIDQFELPPRIYNCLKRSNIHTLLDLLNNSPDELMKMKYFRIEDVKHILDILEMENNFL

Sed0000903 (gene) of Chayote v1 genome