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Sed0000927 (gene) of Chayote v1 genome

Gene IDSed0000927
OrganismSechium edule (Chayote v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationLG03:8468842..8469717
RNA-Seq ExpressionSed0000927
SyntenySed0000927
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7014482.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-0860.78Show/hide
Query:  DRLRKFLHNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKH
        +RLR FL NCKTGN  ++EA QFF+ M+ A PT ++SSFN  LGG+AK KH
Subjt:  DRLRKFLHNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKH

XP_022155826.1 pentatricopeptide repeat-containing protein At1g63330-like [Momordica charantia]1.3e-0963.46Show/hide
Query:  RDRLRKFLHNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKH
        +DR R FL NCKTGN+   EALQFF+ M+  KPT ++SSFN  LGG+AKIKH
Subjt:  RDRLRKFLHNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKH

XP_022953742.1 putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Cucurbita moschata]6.6e-0964Show/hide
Query:  RLRKFLHNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKH
        RLR FL NCKTGN  ++EALQFF+ M+ A PT ++SSFN  LGG+AK KH
Subjt:  RLRKFLHNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKH

XP_022992036.1 pentatricopeptide repeat-containing protein At1g63330-like [Cucurbita maxima]3.9e-0962.75Show/hide
Query:  DRLRKFLHNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKH
        +RLR FL NCKTGN  ++EALQFF+ M+ A PT ++SSFN  LGG+AK KH
Subjt:  DRLRKFLHNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKH

XP_038874245.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Benincasa hispida]3.5e-1063.46Show/hide
Query:  RDRLRKFLHNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKH
        ++RLR FLHNCKTGN   +E LQFF+ M+SA PT +++SFN  LGG+AKIKH
Subjt:  RDRLRKFLHNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKH

TrEMBL top hitse value%identityAlignment
A0A0A0K5F6 Uncharacterized protein3.9e-0755.77Show/hide
Query:  RDRLRKFLHNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKH
        + +L  FLHNCKTGNI  T+A QFF  M+ + PT  +SSF   L G+AKIKH
Subjt:  RDRLRKFLHNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKH

A0A6J1DSW3 pentatricopeptide repeat-containing protein At1g63330-like6.4e-1063.46Show/hide
Query:  RDRLRKFLHNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKH
        +DR R FL NCKTGN+   EALQFF+ M+  KPT ++SSFN  LGG+AKIKH
Subjt:  RDRLRKFLHNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKH

A0A6J1GP31 putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial3.2e-0964Show/hide
Query:  RLRKFLHNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKH
        RLR FL NCKTGN  ++EALQFF+ M+ A PT ++SSFN  LGG+AK KH
Subjt:  RLRKFLHNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKH

A0A6J1JSG4 pentatricopeptide repeat-containing protein At1g63330-like1.9e-0962.75Show/hide
Query:  DRLRKFLHNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKH
        +RLR FL NCKTGN  ++EALQFF+ M+ A PT ++SSFN  LGG+AK KH
Subjt:  DRLRKFLHNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKH

A0A6P3ZCY1 pentatricopeptide repeat-containing protein At5g65560-like1.5e-0658.49Show/hide
Query:  RDRLRKFL-HNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKH
        R +L KFL  NCK+GN  +TEALQ+F+ MI  +P  S+SSFNT LG +AK KH
Subjt:  RDRLRKFL-HNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTCCAAGTTTGTGCCGTACTTTTGCTCTGTTGCTGCCGGTTCCTCGCAACACCGCCGTGATCGGCTTCGCAAGTTCCTCCACAATTGCAAAACAGGTAACATTGA
CATTACAGAAGCGCTACAATTCTTTGAATTCATGATTTCTGCAAAACCCACCTCTTCAATCTCATCCTTCAACACTTTTCTTGGTGGGGTTGCTAAGATTAAGCATGGTA
TGGATTCTGAGGAAACAACTTGGCGGAGACTCAAACTTAGGACCTCGTACTTTGATACCATGATGGGTTGGGTTAAATTTAATTATATCAACCAACATGGAGTTATGATG
ATTGGGGCCGTGGTTCAGTCCCCGAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCTCCAAGTTTGTGCCGTACTTTTGCTCTGTTGCTGCCGGTTCCTCGCAACACCGCCGTGATCGGCTTCGCAAGTTCCTCCACAATTGCAAAACAGGTAACATTGA
CATTACAGAAGCGCTACAATTCTTTGAATTCATGATTTCTGCAAAACCCACCTCTTCAATCTCATCCTTCAACACTTTTCTTGGTGGGGTTGCTAAGATTAAGCATGGTA
TGGATTCTGAGGAAACAACTTGGCGGAGACTCAAACTTAGGACCTCGTACTTTGATACCATGATGGGTTGGGTTAAATTTAATTATATCAACCAACATGGAGTTATGATG
ATTGGGGCCGTGGTTCAGTCCCCGAGTTAA
Protein sequenceShow/hide protein sequence
MVSKFVPYFCSVAAGSSQHRRDRLRKFLHNCKTGNIDITEALQFFEFMISAKPTSSISSFNTFLGGVAKIKHGMDSEETTWRRLKLRTSYFDTMMGWVKFNYINQHGVMM
IGAVVQSPS