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Sed0000934 (gene) of Chayote v1 genome

Gene IDSed0000934
OrganismSechium edule (Chayote v1)
DescriptionPhotosystem I reaction center subunit IV
Genome locationLG11:8050116..8053430
RNA-Seq ExpressionSed0000934
SyntenySed0000934
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009538 - photosystem I reaction center (cellular component)
InterPro domainsIPR003375 - Photosystem I PsaE, reaction centre subunit IV
IPR008990 - Electron transport accessory-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008441802.1 PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis melo]2.8e-5486.11Show/hide
Query:  MAASNLSCIAPGLVIPPSTTI-SSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFK
        MAASNLSCIA G+VIP STTI SSSS+L SLAFFPKNS+S+SRSSRLVIRA+  D A PPP AAA A A AE PKPKPAPIGPKRGAKVKILRKESYW+K
Subjt:  MAASNLSCIAPGLVIPPSTTI-SSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFK

Query:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

XP_022144405.1 photosystem I reaction center subunit IV, chloroplastic-like [Momordica charantia]4.7e-5484.62Show/hide
Query:  MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKD
        MAA+NLSCIA G+VIP S TISSSS+L S+AFFPKN + +SR  RLVIRA+ ++AAPPPPAAAATADAP E  KPKPAPIGPKRGAKVKILRKESYW+KD
Subjt:  MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

XP_022937722.1 photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita moschata]1.3e-5685.31Show/hide
Query:  MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKD
        MAASNLSCIA G++IP STTISSSS+  S+AFFPKNS S+SRS RLV+RA+ ++AA PPPAAAATADAPAEAPKPKPAPIGPKRG KVKILR+ESYW+KD
Subjt:  MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

XP_022965997.1 photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita maxima]1.9e-5583.92Show/hide
Query:  MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKD
        MAASNLSCIA G++IP S TISSSS+  S+AFFPKNS S+SRS RLV+RA+ ++AA PPPAAAATADAPAE PKPKPAPIGPKRG KVKILR+ESYW+KD
Subjt:  MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

XP_023536804.1 photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita pepo subsp. pepo]3.0e-5685.31Show/hide
Query:  MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKD
        MAASNLSCIA G++IP S TISSSS+  S+AFFPKNS S+SRS RLV+RA+ ++AA PPPAAAATADAPAEAPKPKPAPIGPKRG KVKILRKESYW+KD
Subjt:  MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

TrEMBL top hitse value%identityAlignment
A0A0A0LJQ1 Uncharacterized protein2.8e-5284.72Show/hide
Query:  MAASNLSCIAPGLVIPPSTTI-SSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFK
        MAASNLSCIA G+VIP STTI SSSS+L SLAFFPKNS+S+SRSSRLVIRAS  D A PPPAA A   A  E PKPKPAPIGPKRGAKVKILRKESYW+K
Subjt:  MAASNLSCIAPGLVIPPSTTI-SSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFK

Query:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE++EVA
Subjt:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

A0A1S3B3T3 photosystem I reaction center subunit IV, chloroplastic-like1.3e-5486.11Show/hide
Query:  MAASNLSCIAPGLVIPPSTTI-SSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFK
        MAASNLSCIA G+VIP STTI SSSS+L SLAFFPKNS+S+SRSSRLVIRA+  D A PPP AAA A A AE PKPKPAPIGPKRGAKVKILRKESYW+K
Subjt:  MAASNLSCIAPGLVIPPSTTI-SSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFK

Query:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

A0A6J1CRI6 photosystem I reaction center subunit IV, chloroplastic-like2.3e-5484.62Show/hide
Query:  MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKD
        MAA+NLSCIA G+VIP S TISSSS+L S+AFFPKN + +SR  RLVIRA+ ++AAPPPPAAAATADAP E  KPKPAPIGPKRGAKVKILRKESYW+KD
Subjt:  MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

A0A6J1FC09 photosystem I reaction center subunit IV, chloroplastic-like6.5e-5785.31Show/hide
Query:  MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKD
        MAASNLSCIA G++IP STTISSSS+  S+AFFPKNS S+SRS RLV+RA+ ++AA PPPAAAATADAPAEAPKPKPAPIGPKRG KVKILR+ESYW+KD
Subjt:  MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

A0A6J1HLT8 photosystem I reaction center subunit IV, chloroplastic-like9.3e-5683.92Show/hide
Query:  MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKD
        MAASNLSCIA G++IP S TISSSS+  S+AFFPKNS S+SRS RLV+RA+ ++AA PPPAAAATADAPAE PKPKPAPIGPKRG KVKILR+ESYW+KD
Subjt:  MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

SwissProt top hitse value%identityAlignment
P12354 Photosystem I reaction center subunit IV, chloroplastic3.8e-3061.9Show/hide
Query:  STTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVDQDPNTRYPV
        S   S + +L      P  + S  RS+RLV+RA+ E+AA  P AA+   +AP  A   KP PIGPKRG+KV+I+RKESYW+K VGSVV VDQDP TRYPV
Subjt:  STTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVDQDPNTRYPV

Query:  VVRFNKVNYASVSTNNYALDEVEEVA
        VVRFNKVNYA+VSTNNYALDE++EVA
Subjt:  VVRFNKVNYASVSTNNYALDEVEEVA

Q41228 Photosystem I reaction center subunit IV A, chloroplastic4.1e-3260Show/hide
Query:  MAASNLSCIAPG-LVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAP--KPKPAPIGPKRGAKVKILRKESYW
        MA+ N++  A   LV  P+   ++++   ++ FF   +   S + RLV+RA+ E A   PPAAAATA+ PAEAP    KP PIGPKRG KV+ILRKESYW
Subjt:  MAASNLSCIAPG-LVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAP--KPKPAPIGPKRGAKVKILRKESYW

Query:  FKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV
        +K  GSVV  DQDPNTRYPVVVRFNKVNYA+VSTNNYALDE+EEV
Subjt:  FKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV

Q41229 Photosystem I reaction center subunit IV B, chloroplastic1.4e-3259.03Show/hide
Query:  MAASNLSCIAPG-LVIPPSTTISSSSKLPSLAFFPKNSSSLSRS-SRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWF
        MA+S+++  A G +V  P+   S+++   S+ FF  + ++ + +  RLV+RA+ E+AAPP   A A  +AP  A   KP PIGPKRG KV++LRKESYW+
Subjt:  MAASNLSCIAPG-LVIPPSTTISSSSKLPSLAFFPKNSSSLSRS-SRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWF

Query:  KDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV
        K VGSVV VDQDPNTRYPVVVRFNKVNYA+VSTNNYALDEVEEV
Subjt:  KDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV

Q9S714 Photosystem I reaction center subunit IV B, chloroplastic4.6e-2858.96Show/hide
Query:  IPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAA------AATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVD
        +P +    SS     ++F P  S      SRLV+RA+ ED  P   ++      AA A A   A K KP PIGPKRG+KVKILRKESYW+K+VGSVV VD
Subjt:  IPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAA------AATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVD

Query:  QDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV
        QDP TRYPVVVRF KVNYA++STNNYALDEVEEV
Subjt:  QDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV

Q9S831 Photosystem I reaction center subunit IV A, chloroplastic1.5e-3163.04Show/hide
Query:  VIPPSTT--ISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAP------PPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVV
        V+P + T    +SS   S++F P  ++     SRLV+RA+ ED AP        PAAAA  D  A A KPKP PIGPKRG+KVKILR+ESYWFK+VGSVV
Subjt:  VIPPSTT--ISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAP------PPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVV

Query:  TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
         VDQDP TRYPVVVRF KVNYA++STNNYALDEVEEVA
Subjt:  TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

Arabidopsis top hitse value%identityAlignment
AT2G20260.1 photosystem I subunit E-23.3e-2958.96Show/hide
Query:  IPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAA------AATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVD
        +P +    SS     ++F P  S      SRLV+RA+ ED  P   ++      AA A A   A K KP PIGPKRG+KVKILRKESYW+K+VGSVV VD
Subjt:  IPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAA------AATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVD

Query:  QDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV
        QDP TRYPVVVRF KVNYA++STNNYALDEVEEV
Subjt:  QDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV

AT4G28750.1 Photosystem I reaction centre subunit IV / PsaE protein1.1e-3263.04Show/hide
Query:  VIPPSTT--ISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAP------PPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVV
        V+P + T    +SS   S++F P  ++     SRLV+RA+ ED AP        PAAAA  D  A A KPKP PIGPKRG+KVKILR+ESYWFK+VGSVV
Subjt:  VIPPSTT--ISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAP------PPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVV

Query:  TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
         VDQDP TRYPVVVRF KVNYA++STNNYALDEVEEVA
Subjt:  TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCCTCTAACCTTTCATGCATTGCTCCTGGCCTTGTCATTCCCCCTTCAACCACCATTTCTTCCTCTTCCAAGTTACCTTCTTTGGCATTCTTCCCCAAGAATTC
CTCCTCTCTTTCTAGATCATCTAGATTGGTTATCCGTGCCTCGACCGAGGATGCCGCTCCCCCGCCCCCTGCCGCTGCCGCCACCGCCGATGCCCCGGCCGAAGCACCCA
AGCCCAAGCCTGCCCCAATTGGCCCCAAGAGAGGTGCAAAGGTTAAGATTCTGAGGAAAGAATCCTACTGGTTCAAGGATGTGGGATCTGTTGTGACAGTTGACCAGGAC
CCAAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAATTATGCACTTGATGAGGTTGAAGAAGTTGCTTAA
mRNA sequenceShow/hide mRNA sequence
CTTTTCCATAGGCTGAAAAAATTGCACAAAAGAATCATTATGTGGTTTACATTTATTACTCAAACCTCATCATCTCCAAAGGCATTAGCTGAAACTTTGAGAGACAGAGC
CCATGGCTGCCTCTAACCTTTCATGCATTGCTCCTGGCCTTGTCATTCCCCCTTCAACCACCATTTCTTCCTCTTCCAAGTTACCTTCTTTGGCATTCTTCCCCAAGAAT
TCCTCCTCTCTTTCTAGATCATCTAGATTGGTTATCCGTGCCTCGACCGAGGATGCCGCTCCCCCGCCCCCTGCCGCTGCCGCCACCGCCGATGCCCCGGCCGAAGCACC
CAAGCCCAAGCCTGCCCCAATTGGCCCCAAGAGAGGTGCAAAGGTTAAGATTCTGAGGAAAGAATCCTACTGGTTCAAGGATGTGGGATCTGTTGTGACAGTTGACCAGG
ACCCAAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAATTATGCACTTGATGAGGTTGAAGAAGTTGCTTAAGATTTT
TATGCGTTTGTGTGTATTTTTTAGCTAAATGTTTGTATAATACTTCCAATTTTAATCTATTTCTCCCCTCCATCAGTGTGTGTTATAATTTCTCTTATATTTTACTATAT
ATATAGTTCACAAGAATCACTAATTTTGTTATGCT
Protein sequenceShow/hide protein sequence
MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVDQD
PNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA