CuGenDBv2

Gene ID	Sed0000935
Organism	Sechium edule (Chayote v1)
Description	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
Genome location	LG05:204292..206337
RNA-Seq Expression	Sed0000935
Synteny	Sed0000935
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0005829 - cytosol (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003824 - catalytic activity (molecular function)
InterPro domains	IPR001509 - NAD-dependent epimerase/dehydratase IPR036291 - NAD(P)-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6571471.1 Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-161

75.56

Show/hide

Query:  AAALACSCSLFYSKPSIHPIQPCVPPRLSISHHPC---AALSSSFSICCPSTSRPPSNRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFYFAK
        AA  + S SLF SKPSIH      P  L  S  P    +AL+SSF+I       P S+R S+  + +  A+S   A KK VLIVNTNSGGHAVIGFYFA+
Subjt:  AAALACSCSLFYSKPSIHPIQPCVPPRLSISHHPC---AALSSSFSICCPSTSRPPSNRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFYFAK

Query:  QLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYKPTDE
        QLL SGH+VTILT+G++ SDKM KPPFNRFSEIVSAGG TVWGDPAEV   VAGASFDV                    SSGVKQFLFISSAGIYKPTDE
Subjt:  QLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYKPTDE

Query:  PPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCV
        PPHVEGD VKA AGHV VE+YIAEVF SWAVFRPQY+IGSGNNKDCEEWFFDRIVRDRPI IPGSGMQL+NI+HVRDLSSMLTLAVEKPDEAH+NIFNCV
Subjt:  PPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCV

Query:  SDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLK
        SDRAVTLDGMAKLCA+AAGR VNIVHYDPK+VG+DAKKAFPFRNMHFYAEPRAAQ+ILGWKS+TNLPEDLKERFEEYVKIGRDKK IKFELDD ILESLK
Subjt:  SDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLK

Query:  VPVAA
        VPVAA
Subjt:  VPVAA

XP_022155645.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Momordica charantia]

4.0e-164

76.77

Show/hide

Query:  AALACSCSLFYSKPSIHPIQPCVP---PRLSISHHPCAALSSSFSI-----CCPSTSRPPSNRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGF
        AALA SCSLF S PSIH + P V    PRLS+S    +ALSS+FSI       PS SRP  +  SSFT  AT      A +KKKVLIVNTNSGGHA+IGF
Subjt:  AALACSCSLFYSKPSIHPIQPCVP---PRLSISHHPCAALSSSFSI-----CCPSTSRPPSNRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGF

Query:  YFAKQLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYK
        YFAKQLL SGH+VTILT+G+Q SDKMNKPPFNRFSEIVSAGG TVWGDPAEV   VAGASFDV                    SSGVKQFLFISSAGIYK
Subjt:  YFAKQLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYK

Query:  PTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNI
        PTDEPPHVEGD V A+A HV VE+YIAEVFGSWA+FRPQY+IGSGNNKDCEEWFFDRIVRDRP+ IPGSGMQL+NIAHVRDLSSMLTLAVEKPDEAHSNI
Subjt:  PTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNI

Query:  FNCVSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKIL
        FNCVS RAVTLDGMAKLCA+AAGRSV IVHYDPK+VGIDAKKAFPFR  HFYAEPRAAQDILGWK  T LP+DLKERFEEYVKIGRDKK I+F+LDDKIL
Subjt:  FNCVSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKIL

Query:  ESLKVPVAA
        ESLKVPVAA
Subjt:  ESLKVPVAA

XP_022963688.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita moschata]

1.7e-162

75.56

Show/hide

Query:  AAALACSCSLFYSKPSIH---PIQPCVPPRLSISHHPCAALSSSFSICCPSTSRPPSNRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFYFAK
        AA  + S SLF SKPSIH    + PC+           +AL+SSF+I       P S+R S+  + +  A+S   A KK VLIVNTNSGGHAVIGFYFAK
Subjt:  AAALACSCSLFYSKPSIH---PIQPCVPPRLSISHHPCAALSSSFSICCPSTSRPPSNRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFYFAK

Query:  QLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYKPTDE
        QLL SGH+VTILT+G++ SDKM KPPFNRFSEIVSAGG TVWGDPAEV   VAGASFDV                    SSGVKQFLFISSAGIYKPTDE
Subjt:  QLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYKPTDE

Query:  PPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCV
        PPHVEGD VKA AGHV VE+YIAEVF SWAVFRPQY+IGSGNNKDCEEWFFDRIVRDRPI IPGSGMQL+NI+HVRDLSSMLTLAVEKPDEAH+NIFNCV
Subjt:  PPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCV

Query:  SDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLK
        SDRAVTLDGMAKLCA+AAGR VNIVHYDPK+VG+DAKKAFPFRNMHFYAEPRAAQ+ILGWKS+TNLPEDLKERFEEYVKIGRDKK IKFELDDKILESLK
Subjt:  SDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLK

Query:  VPVAA
        VPVAA
Subjt:  VPVAA

XP_022967430.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita maxima]

1.3e-162

76.3

Show/hide

Query:  AAALACSCSLFYSKPSIHPIQPCVPPRLSISHHPC---AALSSSFSICCPSTSRPPSNRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFYFAK
        AA  + S SLF SKPSIH      P  L  S  P    +AL+SSF+I       P S+R S+  + +  A+S   A KK VLIVNTNSGGHAVIGFYFAK
Subjt:  AAALACSCSLFYSKPSIHPIQPCVPPRLSISHHPC---AALSSSFSICCPSTSRPPSNRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFYFAK

Query:  QLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYKPTDE
        QLL SGH+VTILT+G++ SDKM KPPFNRFSEIVSAGG TVWGDPAEV   VAGASFDV                    SSGVKQFLFISSAGIYKPTDE
Subjt:  QLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYKPTDE

Query:  PPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCV
        PPHVEGD VKA AGHV VE+YIAEVF SWAVFRPQY+IGSGNNKDCEEWFFDRIVRDRPI IPGSGMQL+NIAHVRDLSSMLTLAVEKPDEAH+NIFNCV
Subjt:  PPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCV

Query:  SDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLK
        SDRAVTLDGMAKLCA+AAGR VNIVHYDPK VG+DAKKAFPFRNMHFYAEPRAAQ+ILGWKS+TNLPEDLKERFEEYVKIGRDKK IKFELDDKILESLK
Subjt:  SDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLK

Query:  VPVAA
        VPVAA
Subjt:  VPVAA

XP_038888331.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-like [Benincasa hispida]

5.2e-164

76.96

Show/hide

Query:  AALACSCSLFYSKPSIHPIQPCVP--PRLSIS--HHPCAALSSSFSICCPSTSRP---PSNRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFY
        AALA S SLF SKPSIH      P  P LS+S   HP + LSSS SI     S P   PSN C SF+  AT      +  KKKVLIVNTNSGGHAVIGFY
Subjt:  AALACSCSLFYSKPSIHPIQPCVP--PRLSIS--HHPCAALSSSFSICCPSTSRP---PSNRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFY

Query:  FAKQLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYKP
        FAKQLL SGH+VTILT+G++ SDKM KPPFNRFSEIVS GG TVWGDPAE+   VAGASFDV                    SSGVKQFLFISSAGIYKP
Subjt:  FAKQLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYKP

Query:  TDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIF
        TDEPPHVEGD VKA AGHV VE+YIAEVFGSWA+FRPQY+IGSGNNKDCEEWFFDRIVR+RP+ IPGSGMQL+NIAHVRDLSSMLTLAVEKPDEAHSNIF
Subjt:  TDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIF

Query:  NCVSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILE
        NCVSDRAVTLDGMAKLCA+AAGR V+IVH+DPK+VG+DAKKAFPFRNMHFYAEPRAAQDILGWK TTNLPEDLKERFEEYVKIGRDKK IKFELDDKILE
Subjt:  NCVSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILE

Query:  SLKVPVAA
        SLKVPVAA
Subjt:  SLKVPVAA

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BLW3 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

2.6e-161

74.88

Show/hide

Query:  AALACSCSLFYSKPSIH---PIQPCVPPRLSISHHPCAALSSSFSICCPSTSRPPSNRCSSFTAHATPAAS--SPAAHKKKVLIVNTNSGGHAVIGFYFA
        AAL  S SLF SKPSI+   PI P   P         + +SSSFSI   +     S+  SSF      + S  + ++ KKKVLIVNTNSGGHAVIGFYFA
Subjt:  AALACSCSLFYSKPSIH---PIQPCVPPRLSISHHPCAALSSSFSICCPSTSRPPSNRCSSFTAHATPAAS--SPAAHKKKVLIVNTNSGGHAVIGFYFA

Query:  KQLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYKPTD
        K+LL SGH+VTILT+G+Q SDKMNKPPFNRFSEIVS GG TVWGDPAE+   + GASFDV                    SSGVKQFLFISSAGIYKPTD
Subjt:  KQLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYKPTD

Query:  EPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNC
        EPPHVEGD VKA AGHV VE+Y+AEVF SWA+FRPQY+IGSGNNKDCEEWFFDRIVRDRPI IPGSGMQL+NIAHVRDLSSMLTLAVEKPDEAHSNIFNC
Subjt:  EPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNC

Query:  VSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESL
        V+DRAVTLDGMAKLCA+AAGR VNIVHYDPK+VG+DAKKAFPFRNMHFYAEPRAAQ+ILGWKSTTNLPEDLKERFEEYVKIGRDKK IKFELDDKILESL
Subjt:  VSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESL

Query:  KVPVAA
        KVPVAA
Subjt:  KVPVAA

A0A5D3E2H3 Chloroplast stem-loop binding protein of 41 kDa a

2.6e-161

74.88

Show/hide

Query:  AALACSCSLFYSKPSIH---PIQPCVPPRLSISHHPCAALSSSFSICCPSTSRPPSNRCSSFTAHATPAAS--SPAAHKKKVLIVNTNSGGHAVIGFYFA
        AAL  S SLF SKPSI+   PI P   P         + +SSSFSI   +     S+  SSF      + S  + ++ KKKVLIVNTNSGGHAVIGFYFA
Subjt:  AALACSCSLFYSKPSIH---PIQPCVPPRLSISHHPCAALSSSFSICCPSTSRPPSNRCSSFTAHATPAAS--SPAAHKKKVLIVNTNSGGHAVIGFYFA

Query:  KQLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYKPTD
        K+LL SGH+VTILT+G+Q SDKMNKPPFNRFSEIVS GG TVWGDPAE+   + GASFDV                    SSGVKQFLFISSAGIYKPTD
Subjt:  KQLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYKPTD

Query:  EPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNC
        EPPHVEGD VKA AGHV VE+Y+AEVF SWA+FRPQY+IGSGNNKDCEEWFFDRIVRDRPI IPGSGMQL+NIAHVRDLSSMLTLAVEKPDEAHSNIFNC
Subjt:  EPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNC

Query:  VSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESL
        V+DRAVTLDGMAKLCA+AAGR VNIVHYDPK+VG+DAKKAFPFRNMHFYAEPRAAQ+ILGWKSTTNLPEDLKERFEEYVKIGRDKK IKFELDDKILESL
Subjt:  VSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESL

Query:  KVPVAA
        KVPVAA
Subjt:  KVPVAA

A0A6J1DN04 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

2.5e-164

76.77

Show/hide

Query:  AALACSCSLFYSKPSIHPIQPCVP---PRLSISHHPCAALSSSFSI-----CCPSTSRPPSNRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGF
        AALA SCSLF S PSIH + P V    PRLS+S    +ALSS+FSI       PS SRP  +  SSFT  AT      A +KKKVLIVNTNSGGHA+IGF
Subjt:  AALACSCSLFYSKPSIHPIQPCVP---PRLSISHHPCAALSSSFSI-----CCPSTSRPPSNRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGF

Query:  YFAKQLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYK
        YFAKQLL SGH+VTILT+G+Q SDKMNKPPFNRFSEIVSAGG TVWGDPAEV   VAGASFDV                    SSGVKQFLFISSAGIYK
Subjt:  YFAKQLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYK

Query:  PTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNI
        PTDEPPHVEGD V A+A HV VE+YIAEVFGSWA+FRPQY+IGSGNNKDCEEWFFDRIVRDRP+ IPGSGMQL+NIAHVRDLSSMLTLAVEKPDEAHSNI
Subjt:  PTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNI

Query:  FNCVSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKIL
        FNCVS RAVTLDGMAKLCA+AAGRSV IVHYDPK+VGIDAKKAFPFR  HFYAEPRAAQDILGWK  T LP+DLKERFEEYVKIGRDKK I+F+LDDKIL
Subjt:  FNCVSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKIL

Query:  ESLKVPVAA
        ESLKVPVAA
Subjt:  ESLKVPVAA

A0A6J1HIM8 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

8.1e-163

75.56

Show/hide

Query:  AAALACSCSLFYSKPSIH---PIQPCVPPRLSISHHPCAALSSSFSICCPSTSRPPSNRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFYFAK
        AA  + S SLF SKPSIH    + PC+           +AL+SSF+I       P S+R S+  + +  A+S   A KK VLIVNTNSGGHAVIGFYFAK
Subjt:  AAALACSCSLFYSKPSIH---PIQPCVPPRLSISHHPCAALSSSFSICCPSTSRPPSNRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFYFAK

Query:  QLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYKPTDE
        QLL SGH+VTILT+G++ SDKM KPPFNRFSEIVSAGG TVWGDPAEV   VAGASFDV                    SSGVKQFLFISSAGIYKPTDE
Subjt:  QLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYKPTDE

Query:  PPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCV
        PPHVEGD VKA AGHV VE+YIAEVF SWAVFRPQY+IGSGNNKDCEEWFFDRIVRDRPI IPGSGMQL+NI+HVRDLSSMLTLAVEKPDEAH+NIFNCV
Subjt:  PPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCV

Query:  SDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLK
        SDRAVTLDGMAKLCA+AAGR VNIVHYDPK+VG+DAKKAFPFRNMHFYAEPRAAQ+ILGWKS+TNLPEDLKERFEEYVKIGRDKK IKFELDDKILESLK
Subjt:  SDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLK

Query:  VPVAA
        VPVAA
Subjt:  VPVAA

A0A6J1HUG4 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

6.2e-163

76.3

Show/hide

Query:  AAALACSCSLFYSKPSIHPIQPCVPPRLSISHHPC---AALSSSFSICCPSTSRPPSNRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFYFAK
        AA  + S SLF SKPSIH      P  L  S  P    +AL+SSF+I       P S+R S+  + +  A+S   A KK VLIVNTNSGGHAVIGFYFAK
Subjt:  AAALACSCSLFYSKPSIHPIQPCVPPRLSISHHPC---AALSSSFSICCPSTSRPPSNRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFYFAK

Query:  QLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYKPTDE
        QLL SGH+VTILT+G++ SDKM KPPFNRFSEIVSAGG TVWGDPAEV   VAGASFDV                    SSGVKQFLFISSAGIYKPTDE
Subjt:  QLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYKPTDE

Query:  PPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCV
        PPHVEGD VKA AGHV VE+YIAEVF SWAVFRPQY+IGSGNNKDCEEWFFDRIVRDRPI IPGSGMQL+NIAHVRDLSSMLTLAVEKPDEAH+NIFNCV
Subjt:  PPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCV

Query:  SDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLK
        SDRAVTLDGMAKLCA+AAGR VNIVHYDPK VG+DAKKAFPFRNMHFYAEPRAAQ+ILGWKS+TNLPEDLKERFEEYVKIGRDKK IKFELDDKILESLK
Subjt:  SDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLK

Query:  VPVAA
        VPVAA
Subjt:  VPVAA

SwissProt top hits

e value

%identity

Alignment

Q9LYA9 Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

5.1e-146

66.5

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Query:  ALACSCSLFYSKPSIHPIQP-CVPPRLSISHHPCAALSSSFSICCPSTSRPPSNRCSSFTAHATPAAS--------SPAAHKKKVLIVNTNSGGHAVIGF
        A   S SLF+S  +  PI    +PP L    H  +  SSS S    S+S   S+   +F+   +   S        S    KK VLIVNTNSGGHAVIGF
Subjt:  ALACSCSLFYSKPSIHPIQP-CVPPRLSISHHPCAALSSSFSICCPSTSRPPSNRCSSFTAHATPAAS--------SPAAHKKKVLIVNTNSGGHAVIGF

Query:  YFAKQLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYK
        YFAK+LL++GH VTILT+G + S+KM KPPFNRFSEIVS GG TVWG+PA VAN V G +FDV                    SSGVKQFLFISSAGIYK
Subjt:  YFAKQLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYK

Query:  PTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNI
         T++PPHVEGDAVKA AGHV VE+Y+AE FG+WA FRPQY+IGSGNNKDCEEWFFDRIVRDR + IPGSG+QL+NI+HVRDLSSMLT AV  P+ A  NI
Subjt:  PTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNI

Query:  FNCVSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKIL
        FNCVSDRAVTLDGMAKLCA AAG++V IVHYDPK++G+DAKKAF FRNMHFYAEPRAA+D+LGW+S TNLPEDLKERFEEYVKIGRDKK+IKFELDDKIL
Subjt:  FNCVSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKIL

Query:  ESLKVPVAA
        E+LK PVAA
Subjt:  ESLKVPVAA

Q9SA52 Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic

8.0e-43

34.95

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Query:  AAHKKKVLIVNTNSGGHAVIGFYFAKQLLASGHDVTILTLGQQDSDKM----NKPPFNRF-SEIVSAGGNTVWGDPAEVANAVAGASFDVSSGV------
        A+ +KK+LI+    GG   IG + ++ L+  GH VT+ T G+    K     +   F  F S+I+   G+    D   V ++++   FDV   +      
Subjt:  AAHKKKVLIVNTNSGGHAVIGFYFAKQLLASGHDVTILTLGQQDSDKM----NKPPFNRF-SEIVSAGGNTVWGDPAEVANAVAGASFDVSSGV------

Query:  ------------KQFLFISSAGIYKPTDEPPHVEGDAVKASAGH---VAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQ
                    +Q+++ SSAG+Y  +D  PH E DAV   + H   +  E  +     +W   RP YI G  N    EEWFF R+   RPI +P SG+Q
Subjt:  ------------KQFLFISSAGIYKPTDEPPHVEGDAVKASAGH---VAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQ

Query:  LSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAKAAG-RSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLP
        +S + HV+DL++   L V   ++A   IFN   ++ VT DG+AK CAKA G     IVHY+PK      KKAFPFR+ HF+A    A+ +LGWK   +L 
Subjt:  LSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAKAAG-RSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLP

Query:  EDLKERFEEYVKIGRDKKDIKFELDDKIL
        E L + +      G  +K+  F  DD IL
Subjt:  EDLKERFEEYVKIGRDKKDIKFELDDKIL

Arabidopsis top hits

e value

%identity

Alignment

AT1G09340.1 chloroplast RNA binding

5.7e-44

34.95

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Query:  AAHKKKVLIVNTNSGGHAVIGFYFAKQLLASGHDVTILTLGQQDSDKM----NKPPFNRF-SEIVSAGGNTVWGDPAEVANAVAGASFDVSSGV------
        A+ +KK+LI+    GG   IG + ++ L+  GH VT+ T G+    K     +   F  F S+I+   G+    D   V ++++   FDV   +      
Subjt:  AAHKKKVLIVNTNSGGHAVIGFYFAKQLLASGHDVTILTLGQQDSDKM----NKPPFNRF-SEIVSAGGNTVWGDPAEVANAVAGASFDVSSGV------

Query:  ------------KQFLFISSAGIYKPTDEPPHVEGDAVKASAGH---VAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQ
                    +Q+++ SSAG+Y  +D  PH E DAV   + H   +  E  +     +W   RP YI G  N    EEWFF R+   RPI +P SG+Q
Subjt:  ------------KQFLFISSAGIYKPTDEPPHVEGDAVKASAGH---VAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQ

Query:  LSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAKAAG-RSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLP
        +S + HV+DL++   L V   ++A   IFN   ++ VT DG+AK CAKA G     IVHY+PK      KKAFPFR+ HF+A    A+ +LGWK   +L 
Subjt:  LSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAKAAG-RSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLP

Query:  EDLKERFEEYVKIGRDKKDIKFELDDKIL
        E L + +      G  +K+  F  DD IL
Subjt:  EDLKERFEEYVKIGRDKKDIKFELDDKIL

AT3G63140.1 chloroplast stem-loop binding protein of 41 kDa

3.6e-147

66.5

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Query:  ALACSCSLFYSKPSIHPIQP-CVPPRLSISHHPCAALSSSFSICCPSTSRPPSNRCSSFTAHATPAAS--------SPAAHKKKVLIVNTNSGGHAVIGF
        A   S SLF+S  +  PI    +PP L    H  +  SSS S    S+S   S+   +F+   +   S        S    KK VLIVNTNSGGHAVIGF
Subjt:  ALACSCSLFYSKPSIHPIQP-CVPPRLSISHHPCAALSSSFSICCPSTSRPPSNRCSSFTAHATPAAS--------SPAAHKKKVLIVNTNSGGHAVIGF

Query:  YFAKQLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYK
        YFAK+LL++GH VTILT+G + S+KM KPPFNRFSEIVS GG TVWG+PA VAN V G +FDV                    SSGVKQFLFISSAGIYK
Subjt:  YFAKQLLASGHDVTILTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDV--------------------SSGVKQFLFISSAGIYK

Query:  PTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNI
         T++PPHVEGDAVKA AGHV VE+Y+AE FG+WA FRPQY+IGSGNNKDCEEWFFDRIVRDR + IPGSG+QL+NI+HVRDLSSMLT AV  P+ A  NI
Subjt:  PTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSGNNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNI

Query:  FNCVSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKIL
        FNCVSDRAVTLDGMAKLCA AAG++V IVHYDPK++G+DAKKAF FRNMHFYAEPRAA+D+LGW+S TNLPEDLKERFEEYVKIGRDKK+IKFELDDKIL
Subjt:  FNCVSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKIL

Query:  ESLKVPVAA
        E+LK PVAA
Subjt:  ESLKVPVAA

Sequences

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CDS sequence

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ATGGCTGCTGCTGCTCTTGCTTGCTCATGTTCCCTCTTCTACTCTAAACCCTCCATCCATCCAATTCAACCTTGTGTTCCTCCTCGTCTGTCCATTTCTCACCACCCTTG
TGCTGCTCTTTCATCCTCTTTTTCCATTTGCTGTCCGTCCACTTCCAGACCACCCTCCAACCGTTGCAGCTCTTTCACTGCTCATGCCACACCTGCTGCCTCCTCCCCTG
CTGCCCACAAAAAGAAGGTCTTGATTGTCAACACCAACAGCGGCGGACATGCAGTCATTGGCTTCTACTTCGCCAAACAGCTTCTGGCTTCCGGCCATGACGTCACAATT
CTCACTCTCGGCCAACAGGATTCAGACAAGATGAACAAGCCTCCATTTAACAGATTCTCGGAAATTGTGAGTGCGGGAGGCAACACCGTGTGGGGGGATCCAGCAGAAGT
TGCCAACGCTGTGGCTGGAGCATCATTTGATGTCAGCTCTGGTGTGAAGCAGTTTCTATTTATCAGCAGTGCTGGAATTTATAAGCCAACGGATGAGCCTCCTCATGTTG
AAGGGGATGCTGTTAAAGCTAGTGCTGGCCATGTTGCTGTTGAAGAATATATTGCAGAGGTTTTTGGCAGCTGGGCTGTTTTCCGTCCACAGTACATAATTGGATCCGGC
AACAACAAAGATTGTGAAGAGTGGTTCTTTGATCGAATTGTCCGAGACAGACCGATTCTGATTCCAGGCTCCGGGATGCAGCTGTCGAACATCGCTCATGTCAGGGACTT
GTCTTCTATGTTGACACTGGCTGTAGAGAAACCAGATGAGGCACACTCCAACATATTCAACTGTGTAAGTGATCGTGCCGTAACTCTTGATGGAATGGCCAAGCTATGTG
CTAAAGCAGCAGGCCGTTCCGTTAATATTGTTCACTATGATCCAAAGTCAGTTGGGATTGACGCAAAGAAAGCATTTCCTTTCAGGAATATGCATTTCTACGCAGAGCCA
AGAGCAGCCCAGGATATTTTAGGGTGGAAAAGTACCACAAATCTTCCTGAAGATTTGAAGGAGCGATTTGAAGAGTATGTGAAGATTGGTAGAGACAAGAAAGATATTAA
GTTTGAGTTAGATGATAAGATACTTGAGTCCCTAAAAGTTCCAGTAGCTGCTTGA

mRNA sequence

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Protein sequence

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MAAAALACSCSLFYSKPSIHPIQPCVPPRLSISHHPCAALSSSFSICCPSTSRPPSNRCSSFTAHATPAASSPAAHKKKVLIVNTNSGGHAVIGFYFAKQLLASGHDVTI
LTLGQQDSDKMNKPPFNRFSEIVSAGGNTVWGDPAEVANAVAGASFDVSSGVKQFLFISSAGIYKPTDEPPHVEGDAVKASAGHVAVEEYIAEVFGSWAVFRPQYIIGSG
NNKDCEEWFFDRIVRDRPILIPGSGMQLSNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAKAAGRSVNIVHYDPKSVGIDAKKAFPFRNMHFYAEP
RAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKDIKFELDDKILESLKVPVAA

Sed0000935 (gene) of Chayote v1 genome