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Sed0000937 (gene) of Chayote v1 genome

Gene IDSed0000937
OrganismSechium edule (Chayote v1)
Descriptioncleavage stimulation factor subunit 77
Genome locationLG03:15199026..15202034
RNA-Seq ExpressionSed0000937
SyntenySed0000937
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0031123 - RNA 3'-end processing (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011653953.1 cleavage stimulation factor subunit 77 [Cucumis sativus]5.1e-1486.27Show/hide
Query:  DKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
        DKT SNKLLD LKYNVEVAES+ANEAQRLP+LEATPLYEQLLTVYPTA  +
Subjt:  DKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
XP_022154466.1 cleavage stimulation factor subunit 77 isoform X1 [Momordica charantia]1.9e-1382.35Show/hide
Query:  DKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
        DK+ASNKLLD+LKYNVEVAE +AN+AQRLP+LEATPLYEQLLTVYPTA  +
Subjt:  DKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
XP_022966187.1 cleavage stimulation factor subunit 77 [Cucurbita maxima]1.1e-1374.6Show/hide
Query:  MVFEDREKKCTMDKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
        M  E  E K   DKTASNKLLDDLKYNVEVAE++A EAQRLP+ EATPLYEQLLTVYPTA  +
Subjt:  MVFEDREKKCTMDKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
XP_023518607.1 cleavage stimulation factor subunit 77 [Cucurbita pepo subsp. pepo]1.1e-1374.6Show/hide
Query:  MVFEDREKKCTMDKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
        M  E  E K   DKTASNKLLDDLKYNVEVAE++A EAQRLP+ EATPLYEQLLTVYPTA  +
Subjt:  MVFEDREKKCTMDKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
XP_038881157.1 cleavage stimulation factor subunit 77 [Benincasa hispida]1.3e-1477.78Show/hide
Query:  MVFEDREKKCTMDKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
        MV E  E K   DKT SNKLLD LKYNVEVAES+ANEAQRLP+LEATPLYEQLLTVYPTA  +
Subjt:  MVFEDREKKCTMDKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
TrEMBL top hitse value%identityAlignment
A0A0A0L2S4 Uncharacterized protein4.2e-1491.67Show/hide
Query:  DKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTA
        DKT SNKLLD LKYNVEVAES+ANEAQRLP+LEATPLYEQLLTVYPTA
Subjt:  DKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTA
A0A5A7TEI5 Cleavage stimulation factor subunit 77 isoform X21.2e-1384.31Show/hide
Query:  DKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
        DKT SNKLLD LKYNVEVAES+A EAQRLP+LEATPLYEQLLTVYPTA  +
Subjt:  DKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
A0A6J1DLS0 cleavage stimulation factor subunit 77 isoform X29.4e-1482.35Show/hide
Query:  DKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
        DK+ASNKLLD+LKYNVEVAE +AN+AQRLP+LEATPLYEQLLTVYPTA  +
Subjt:  DKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
A0A6J1DNS9 cleavage stimulation factor subunit 77 isoform X19.4e-1482.35Show/hide
Query:  DKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
        DK+ASNKLLD+LKYNVEVAE +AN+AQRLP+LEATPLYEQLLTVYPTA  +
Subjt:  DKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
A0A6J1HMA9 cleavage stimulation factor subunit 775.5e-1474.6Show/hide
Query:  MVFEDREKKCTMDKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
        M  E  E K   DKTASNKLLDDLKYNVEVAE++A EAQRLP+ EATPLYEQLLTVYPTA  +
Subjt:  MVFEDREKKCTMDKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
SwissProt top hitse value%identityAlignment
Q8GUP1 Cleavage stimulation factor subunit 772.2e-0456.41Show/hide
Query:  KYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
        KY VE AE+LA  A   P+ +ATP+YEQLL++YPT+  F
Subjt:  KYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
Arabidopsis top hitse value%identityAlignment
AT1G17760.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.6e-0556.41Show/hide
Query:  KYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF
        KY VE AE+LA  A   P+ +ATP+YEQLL++YPT+  F
Subjt:  KYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTTTGAAGATCGTGAGAAAAAGTGCACAATGGATAAAACAGCTAGTAATAAACTTTTGGATGATTTGAAGTACAATGTTGAAGTGGCAGAAAGCTTGGCTAATGA
GGCGCAGCGTTTGCCTATGCTGGAGGCAACACCATTATATGAGCAACTGCTGACGGTGTATCCCACTGCTGTGAGTTTCTTATGCACTTCAGTATTTTTTTTACGTGCTG
AATCACTTCGAATAAGCCAAGGGCAAGAAGAGTCATGGAATATCCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCTTTGAAGATCGTGAGAAAAAGTGCACAATGGATAAAACAGCTAGTAATAAACTTTTGGATGATTTGAAGTACAATGTTGAAGTGGCAGAAAGCTTGGCTAATGA
GGCGCAGCGTTTGCCTATGCTGGAGGCAACACCATTATATGAGCAACTGCTGACGGTGTATCCCACTGCTGTGAGTTTCTTATGCACTTCAGTATTTTTTTTACGTGCTG
AATCACTTCGAATAAGCCAAGGGCAAGAAGAGTCATGGAATATCCTCTGA
Protein sequenceShow/hide protein sequence
MVFEDREKKCTMDKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSFLCTSVFFLRAESLRISQGQEESWNIL