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Sed0000963 (gene) of Chayote v1 genome

Gene IDSed0000963
OrganismSechium edule (Chayote v1)
Description30S ribosomal protein S15, chloroplastic
Genome locationLG13:18711120..18711392
RNA-Seq ExpressionSed0000963
SyntenySed0000963
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR005290 - Ribosomal protein S15, bacterial-type
IPR009068 - S15/NS1, RNA-binding


Homology Show/hide homology
GenBank top hitse value%identityAlignment
YP_009560892.1 ribosomal protein S15 [Trichosanthes kirilowii]1.3e-3695.56Show/hide
Query:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
        M+KNSFSSVISQEEKK+NGGSVEFQV NFTNKIRRLTSHLELHKKDYLSQ+GLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
Subjt:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
YP_009751962.1 ribosomal protein S15 [Cyclanthera pedata]8.7e-3897.78Show/hide
Query:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
        MLKNSFSSVISQEEKK+NGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQ+GLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
Subjt:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
YP_009752205.1 ribosomal protein S15 [Linnaeosicyos amara]1.9e-3796.67Show/hide
Query:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
        M+KNSFSSVISQEEKK+NGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQ+GLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
Subjt:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
YP_009752722.1 ribosomal protein S15 [Ampelosycios humblotii]7.4e-3795.56Show/hide
Query:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
        M+KNSFSSVISQEEKK+NGGSVEFQVF+FTNKIRRLTSHLELHKKDYLSQ+GLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
Subjt:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
YP_009945461.1 ribosomal protein S15 [Sechium edule]1.3e-38100Show/hide
Query:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
        MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
Subjt:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
TrEMBL top hitse value%identityAlignment
A0A6H0ERM3 30S ribosomal protein S15, chloroplastic6.5e-39100Show/hide
Query:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
        MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
Subjt:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
A0A6H0ERW3 30S ribosomal protein S15, chloroplastic9.4e-3896.67Show/hide
Query:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
        M+KNSFSSVISQEEKK+NGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQ+GLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
Subjt:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
A0A6H0ERX9 30S ribosomal protein S15, chloroplastic4.2e-3897.78Show/hide
Query:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
        MLKNSFSSVISQEEKK+NGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQ+GLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
Subjt:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
A0A6H0EUU4 30S ribosomal protein S15, chloroplastic9.4e-3896.67Show/hide
Query:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
        M+KNSFSSVISQEEKK+NGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQ+GLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
Subjt:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
A0A6H0EYC9 30S ribosomal protein S15, chloroplastic9.4e-3896.67Show/hide
Query:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
        M+KNSFSSVISQEEKK+NGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQ+GLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
Subjt:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
SwissProt top hitse value%identityAlignment
A7Y3K4 30S ribosomal protein S15, chloroplastic1.0e-3384.27Show/hide
Query:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKT
        M+KN F SVISQEE K+N GSVEFQ+FNFTNKI+RLTSHL+LHKKDYLSQKGLRKILGKRQRLL+YLSKKNK+RYKELI +LDIRE+KT
Subjt:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKT
Q09FY9 30S ribosomal protein S15, chloroplastic6.1e-3485.23Show/hide
Query:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESK
        M+KN+F SVISQEEK++N GS EFQVFNFTNKIRRLTSHLELH+KDYLSQ+GLRKILGKRQRLL+YLSKKNK+RYKELI+QLDIRE K
Subjt:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESK
Q0G9G2 30S ribosomal protein S15, chloroplastic7.9e-3483.33Show/hide
Query:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
        M+KNSF SVI QEEK+KN GSVEFQVF+FTNKIRRLTSHLELH+KDYLSQ+GLRKILGKRQRLL+YLSKKN++RYKELI +LDIRE KT+
Subjt:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
Q49KU1 30S ribosomal protein S15, chloroplastic7.9e-3484.62Show/hide
Query:  MLKNSFSSVISQ-EEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
        M+KNSF SVISQ EEK++N GS+EFQVF FTNKIRRLTSHLELH+KDYLSQ+GLRKILGKRQRLLSYLSKKN++RYKELI+QLDIRESKT+
Subjt:  MLKNSFSSVISQ-EEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
Q4VZL1 30S ribosomal protein S15, chloroplastic6.3e-3994.44Show/hide
Query:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
        M+KNSFSSVISQEEKK+NGGSVEFQV +FTNKIRRLTSHLELHKKDYLSQ+GLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
Subjt:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
Arabidopsis top hitse value%identityAlignment
AT1G15810.1 S15/NS1, RNA-binding protein2.3e-0439.71Show/hide
Query:  GSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRES
        GS   QV   T KI+ L+S   LHKKD  S+KGL  ++ KR++LL YL + +   Y  ++++L +R++
Subjt:  GSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRES
ATCG01120.1 chloroplast ribosomal protein S157.1e-3075.56Show/hide
Query:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ
        M+KN   S   +E+K+++ GSVEFQVF+FTNKIRRLTSHLELH+KDYLSQ+GLRKILGKRQRLL+YLSKKN++RYKELINQL+IRE KT+
Subjt:  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAAAAAATTCATTCAGCTCTGTTATTTCGCAAGAAGAAAAAAAAAAAAATGGAGGATCTGTTGAATTTCAAGTATTCAATTTCACCAATAAGATCCGAAGACTTAC
TTCACATTTGGAATTGCACAAAAAAGACTATTTATCTCAAAAAGGTCTACGTAAAATTCTCGGAAAACGCCAACGATTACTTTCTTATTTATCAAAGAAAAATAAAATGC
GTTATAAAGAATTAATTAATCAATTGGATATTCGGGAGTCAAAAACTCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTAAAAAATTCATTCAGCTCTGTTATTTCGCAAGAAGAAAAAAAAAAAAATGGAGGATCTGTTGAATTTCAAGTATTCAATTTCACCAATAAGATCCGAAGACTTAC
TTCACATTTGGAATTGCACAAAAAAGACTATTTATCTCAAAAAGGTCTACGTAAAATTCTCGGAAAACGCCAACGATTACTTTCTTATTTATCAAAGAAAAATAAAATGC
GTTATAAAGAATTAATTAATCAATTGGATATTCGGGAGTCAAAAACTCAGTAA
Protein sequenceShow/hide protein sequence
MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ