CuGenDBv2

Gene ID	Sed0000977
Organism	Sechium edule (Chayote v1)
Description	MuDRA-like transposase
Genome location	LG11:9616806..9617750
RNA-Seq Expression	Sed0000977
Synteny	Sed0000977
Gene Ontology terms	GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR006564 - Zinc finger, PMZ-type IPR007527 - Zinc finger, SWIM-type

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0040900.1 MuDRA-like transposase [Cucumis melo var. makuwa]

2.9e-31

34.76

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Query:  MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQ
        MT N  ES N+++ + R+LP+ +  E VR  +Q WF  RR E     +  +K  E  ++ + E    M+V  ID  QF V    ++ +VN++ K+CTC++
Subjt:  MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQ

Query:  YDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLKVKCGRCKKLGH
        +    +PC HA A    +++      ++YY+N+ +   YA  ++PVG    W   +D   + +LPP   + +GRPK +R+ +  E     KCGRCK++GH
Subjt:  YDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLKVKCGRCKKLGH

Query:  NRKTCRNPFS
        NR TC NP S
Subjt:  NRKTCRNPFS

XP_017250997.1 PREDICTED: uncharacterized protein LOC108221644 [Daucus carota subsp. sativus]

2.9e-31

36.49

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Query:  MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQ
        MT+N  E  N+V++  RELP+  M E++R  +Q W    R EA+   T  + + E  L+        + V   +   F+V    ++ IV++  K C C +
Subjt:  MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQ

Query:  YDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLK---VKCGRCKK
        +    IPC HA A +    L   DY S YY  + +  TY  +++PVG    W VP+DIK + + PP  R  +GRPK +R K   E   K   V+CG+CK+
Subjt:  YDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLK---VKCGRCKK

Query:  LGHNRKTCRNP
        +GHNR+TCRNP
Subjt:  LGHNRKTCRNP

XP_030483642.1 uncharacterized protein LOC115700217 [Cannabis sativa]

4.4e-32

36.71

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Query:  MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQ
        MT+N  ES N  +   RELPV  + E +   +Q W+   +  A    T  +   E  L+ Q E G   +V + +   ++V   T   IVN+  K CTCQ+
Subjt:  MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQ

Query:  YDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLKVKCGRCKKLGH
        +D   +PC HA AV+  ++     Y S YY+ +    TY   I P+G +  W++P+D+K+I + PP  +RP GRPK  R K  ++ K KVKCG+C + GH
Subjt:  YDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLKVKCGRCKKLGH

Query:  NRKTCRN
        NR++C+N
Subjt:  NRKTCRN

XP_030497480.1 uncharacterized protein LOC115713133 [Cannabis sativa]

4.4e-32

36.71

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Query:  MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQ
        MT+N  ES N  +   RELPV  + E +   +Q W+   +  A    T  +   E  L+ Q E G   +V + +   ++V   T   IVN+  K CTCQ+
Subjt:  MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQ

Query:  YDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLKVKCGRCKKLGH
        +D   +PC HA AV+  ++     Y S YY+ +    TY   I P+G +  W++P+D+K+I + PP  +RP GRPK  R K  ++ K KVKCG+C + GH
Subjt:  YDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLKVKCGRCKKLGH

Query:  NRKTCRN
        NR++C+N
Subjt:  NRKTCRN

XP_030505053.1 uncharacterized protein LOC115720027 [Cannabis sativa]

2.1e-34

37.98

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Query:  MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQ
        MT+N  ES N   L ARELP+  + EA+R  +Q W    R  A    T  +   E +++G  +T   ++V + +   F+V    +  +VN+ +K CTC +
Subjt:  MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQ

Query:  YDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLKVKCGRCKKLGH
        +    +PC HA AV+    L  ++Y SDYYS     +TY   ++PVG    WD+PQ+IKDI++LPP  R   GRPK +R + + E K ++KC +C +  H
Subjt:  YDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLKVKCGRCKKLGH

Query:  NRKTCRNP
        NR+TC NP
Subjt:  NRKTCRNP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TC30 MuDRA-like transposase

1.4e-31

34.76

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Query:  MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQ
        MT N  ES N+++ + R+LP+ +  E VR  +Q WF  RR E     +  +K  E  ++ + E    M+V  ID  QF V    ++ +VN++ K+CTC++
Subjt:  MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQ

Query:  YDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLKVKCGRCKKLGH
        +    +PC HA A    +++      ++YY+N+ +   YA  ++PVG    W   +D   + +LPP   + +GRPK +R+ +  E     KCGRCK++GH
Subjt:  YDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLKVKCGRCKKLGH

Query:  NRKTCRNPFS
        NR TC NP S
Subjt:  NRKTCRNPFS

A0A5A7UML9 MuDRA-like transposase

1.8e-31

35.24

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Query:  MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQ
        MT N  ES N+++ + R+LP+ +  E VR  +Q WF  RR E     +  +K  E  ++ + E    M+V  ID  QF V    ++ +VN++ K+CTC++
Subjt:  MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQ

Query:  YDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLKVKCGRCKKLGH
        +    +PC HA A    +++      ++YY+N+ +   YA  I+PVG    W   +D   + +LPP   + +GRPK +R+ +  E     KCGRCK++GH
Subjt:  YDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLKVKCGRCKKLGH

Query:  NRKTCRNPFS
        NR TC NP S
Subjt:  NRKTCRNPFS

A0A5D3BSX9 MuDRA-like transposase

2.4e-31

34.76

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Query:  MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQ
        MT N  ES N+++ + R+LP+ +  E VR  +Q WF  RR E     +  +K  E  ++ + E    M+V  ID  QF V    ++ +VN++ K+CTC++
Subjt:  MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQ

Query:  YDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLKVKCGRCKKLGH
        +    +PC HA A    +++      ++YY+N+ +   YA  ++PVG    W   +D   + +LPP   + +GRPK +R+ +  E     KCGRCK++GH
Subjt:  YDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLKVKCGRCKKLGH

Query:  NRKTCRNPFS
        NR TC NP S
Subjt:  NRKTCRNPFS

A0A5D3DKA1 MuDRA-like transposase

2.4e-31

34.76

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Query:  MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQ
        MT N  ES N+++ + R+LP+ +  E VR  +Q WF  RR E     +  +K  E  ++ + E    M+V  ID  QF V    ++ +VN++ K+CTC++
Subjt:  MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQ

Query:  YDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLKVKCGRCKKLGH
        +    +PC HA A    +++      ++YY+N+ +   YA  ++PVG    W   +D   + +LPP   + +GRPK +R+ +  E     KCGRCK++GH
Subjt:  YDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLKVKCGRCKKLGH

Query:  NRKTCRNPFS
        NR TC NP S
Subjt:  NRKTCRNPFS

A0A803PZT2 Uncharacterized protein

1.0e-34

37.98

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Query:  MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQ
        MT+N  ES N   L ARELP+  + EA+R  +Q W    R  A    T  +   E +++G  +T   ++V + +   F+V    +  +VN+ +K CTC +
Subjt:  MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQ

Query:  YDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLKVKCGRCKKLGH
        +    +PC HA AV+    L  ++Y SDYYS     +TY   ++PVG    WD+PQ+IKDI++LPP  R   GRPK +R + + E K ++KC +C +  H
Subjt:  YDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLKVKCGRCKKLGH

Query:  NRKTCRNP
        NR+TC NP
Subjt:  NRKTCRNP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G49920.1 MuDR family transposase

4.4e-06

30.95

Show/hide

Query:  IVNMREKKCTCQQYDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRP
        IV + +  CTC ++ +   PC HA AV     +    YV D Y+ ++  KTY+    PV     W  P+      L+PP    P
Subjt:  IVNMREKKCTCQQYDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRP

AT1G64255.1 MuDR family transposase

5.2e-07

30.3

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Query:  VLSIDTDQFQVVYGTQQN--IVNMREKKCTCQQYDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPP
        V  +D + FQV     +   IV + +  CTC  + +   PC HA AV          YV D Y+ +++++TYA +   V     W  P+     +LLPP
Subjt:  VLSIDTDQFQVVYGTQQN--IVNMREKKCTCQQYDQLGIPCPHASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPP

Sequences

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CDS sequence

Show/hide CDS sequence

ATGACAAACAACTCATGTGAGAGTTATAATAATGTCATGCTTAAAGCGCGTGAGCTACCGGTGCATGCCATGTTCGAGGCAGTTAGGATGTCCATGCAATCTTGGTTTAG
TGCTAGAAGGTTGGAAGCTTCTTATCAGAAAACAAATTTCTCAAAACAATGTGAATTTCAATTAAGAGGGCAGGTTGAAACTGGTCATTTCATGCAGGTGTTATCCATTG
ATACTGATCAATTTCAAGTTGTTTATGGAACTCAGCAAAATATAGTCAATATGAGAGAAAAGAAGTGCACATGCCAGCAATATGATCAACTAGGCATACCATGTCCACAT
GCCTCTGCTGTTATACTCCATAAAGACCTTCGAGCCAAAGATTATGTCTCTGATTATTATTCAAATGATAAAATACGAAAGACTTATGCTGGCCTAATATTCCCTGTTGG
TTTTTCTGGCTATTGGGATGTACCTCAAGACATCAAAGATATCAAACTTTTGCCCCCTTCAACAAGACGCCCAATTGGTAGACCGAAGATGCAACGCATGAAAACAAATG
TTGAAATGAAGCTAAAAGTTAAATGTGGACGGTGCAAAAAGCTTGGTCACAATAGAAAGACGTGCAGAAACCCTTTTTCTGAGTAG

mRNA sequence

Show/hide mRNA sequence

ATTCTATGACAAACAACTCATGTGAGAGTTATAATAATGTCATGCTTAAAGCGCGTGAGCTACCGGTGCATGCCATGTTCGAGGCAGTTAGGATGTCCATGCAATCTTGG
TTTAGTGCTAGAAGGTTGGAAGCTTCTTATCAGAAAACAAATTTCTCAAAACAATGTGAATTTCAATTAAGAGGGCAGGTTGAAACTGGTCATTTCATGCAGGTGTTATC
CATTGATACTGATCAATTTCAAGTTGTTTATGGAACTCAGCAAAATATAGTCAATATGAGAGAAAAGAAGTGCACATGCCAGCAATATGATCAACTAGGCATACCATGTC
CACATGCCTCTGCTGTTATACTCCATAAAGACCTTCGAGCCAAAGATTATGTCTCTGATTATTATTCAAATGATAAAATACGAAAGACTTATGCTGGCCTAATATTCCCT
GTTGGTTTTTCTGGCTATTGGGATGTACCTCAAGACATCAAAGATATCAAACTTTTGCCCCCTTCAACAAGACGCCCAATTGGTAGACCGAAGATGCAACGCATGAAAAC
AAATGTTGAAATGAAGCTAAAAGTTAAATGTGGACGGTGCAAAAAGCTTGGTCACAATAGAAAGACGTGCAGAAACCCTTTTTCTGAGTAGCATTTTTTTT

Protein sequence

Show/hide protein sequence

MTNNSCESYNNVMLKARELPVHAMFEAVRMSMQSWFSARRLEASYQKTNFSKQCEFQLRGQVETGHFMQVLSIDTDQFQVVYGTQQNIVNMREKKCTCQQYDQLGIPCPH
ASAVILHKDLRAKDYVSDYYSNDKIRKTYAGLIFPVGFSGYWDVPQDIKDIKLLPPSTRRPIGRPKMQRMKTNVEMKLKVKCGRCKKLGHNRKTCRNPFSE

Sed0000977 (gene) of Chayote v1 genome