CuGenDBv2

Gene ID	Sed0001004
Organism	Sechium edule (Chayote v1)
Description	Pre-mRNA-splicing factor CWC22-like protein
Genome location	LG04:36124592..36128182
RNA-Seq Expression	Sed0001004
Synteny	Sed0001004
Gene Ontology terms	NA
InterPro domains	IPR021641 - Protein of unknown function DUF3245

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6593666.1 Rop guanine nucleotide exchange factor 3, partial [Cucurbita argyrosperma subsp. sororia]

3.1e-53

81.25

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Query:  MSNKMEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISED
        MS+ ME+PQK RPPE+IKLN+AAKLAA+LMSKMTN EWKET  DN+STV E ENRPPRLGLGAK++ QFRNGPSNDPLDRKLYAKLDAGKKQAARK+ ED
Subjt:  MSNKMEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISED

Query:  TPELKNEDDDE-DDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR
        TP L NEDDD+ DDE ESKTAMF KKRAPTRVTMP L  KKKRR
Subjt:  TPELKNEDDDE-DDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR

KAG7025998.1 hypothetical protein SDJN02_12496 [Cucurbita argyrosperma subsp. argyrosperma]

2.8e-54

81.94

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Query:  MSNKMEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISED
        MS+ ME+PQK RPPE+IKLN+AAKLAA+LMSKMTN EWKET  DN+STV E ENRPPRLGLGAK++ QFRNGPSNDPLDRKLYAKLDAGKKQAARK+ ED
Subjt:  MSNKMEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISED

Query:  TPELKNEDDDE-DDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR
        TP L NEDDD+ DDE ESKTAMF KKRAPTRVTMPPL  KKKRR
Subjt:  TPELKNEDDDE-DDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR

XP_022964046.1 uncharacterized protein LOC111464189 [Cucurbita moschata]

2.8e-54

81.25

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Query:  MSNKMEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISED
        MS+ ME+PQK RPPE+IKLN+AAKLAA+LMSKMTN EWKET  DN+STV E ENRPPRLGLGAK++ QFRNGPSNDPLDRKLYAKLDAGKKQAARK+ ED
Subjt:  MSNKMEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISED

Query:  TPELKNEDDDE-DDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR
        TP + NEDDD+ DDEEES+TAMF KKRAPTRVTMPPL  KKKRR
Subjt:  TPELKNEDDDE-DDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR

XP_023000602.1 uncharacterized protein LOC111494843 [Cucurbita maxima]

3.1e-53

80.56

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Query:  MSNKMEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISED
        MS+ ME+PQK +PPE+IKLN+AAKLAA+LMSKMTN EWKET  DN+STV E ENRPPRLGLGAK++ QFRNGPSNDPLDRKLYAKLDAGKKQAARK+ ED
Subjt:  MSNKMEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISED

Query:  TPELKNEDDDE-DDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR
        T  L NEDDD+ DDEEESKTAMF KKRAPTRVTMPP   KKKRR
Subjt:  TPELKNEDDDE-DDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR

XP_023514247.1 uncharacterized protein LOC111778569 isoform X1 [Cucurbita pepo subsp. pepo]

1.6e-54

81.25

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Query:  MSNKMEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISED
        MS+ ME+PQK RPPE++KLN+AAKLAA+LMSKMTN EWKET  DN+STV E ENRPPRLGLGAK++ QFRNGPSNDPLDRKLYAKLDAGKKQAARK+ ED
Subjt:  MSNKMEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISED

Query:  TPELKNEDDDE-DDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR
        TP L NEDDD+ DDEEESKTAMF KKRAPTRVTMPP   KKKRR
Subjt:  TPELKNEDDDE-DDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K9Y5 Uncharacterized protein

1.3e-52

81.69

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Query:  MEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISEDTPEL
        ME+PQK RPPE+IKLN+AAKLAAQLMSKMTNSEWKETG D+EST  E E RPPRLGLGAKVT  FRNGPSNDPLDRKLYAKLDAGKKQAARK+SEDTP L
Subjt:  MEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISEDTPEL

Query:  K---NEDDDEDDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR
            + DDD+D+EEES+TA+FSKKRAP  VTMPPLQGKKKRR
Subjt:  K---NEDDDEDDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR

A0A1S3C7D1 uncharacterized protein LOC103497715

3.7e-52

81.43

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Query:  MEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISEDTPEL
        ME+PQK RPPE+IKLN+AAKLAAQLMSKMTNSEWKETG DNEST  E E RPPRLGLGAKVT  FRNGPSNDPLDRKLYAKLDAGKKQAARK+SE+TP L
Subjt:  MEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISEDTPEL

Query:  KNEDDD-EDDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR
         N+DDD +D+EEES+TA+F+KKRA   VTMPP QGKKKRR
Subjt:  KNEDDD-EDDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR

A0A5D3BV19 Putative RNA binding protein

3.7e-52

80.28

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Query:  NKMEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISEDTP
        + ME+PQK RPPE+IKLN+AAKLAAQLMSKMTNSEWKETG DNEST  E E RPPRLGLGAKVT  FRNGPSNDPLDRKLYAKLDAGKKQAARK+SE+TP
Subjt:  NKMEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISEDTP

Query:  ELKNEDDD-EDDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR
         L N+DDD +D+EEES+TA+F+KKRA   VTMPP QGKKKRR
Subjt:  ELKNEDDD-EDDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR

A0A6J1HHS0 uncharacterized protein LOC111464189

1.3e-54

81.25

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Query:  MSNKMEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISED
        MS+ ME+PQK RPPE+IKLN+AAKLAA+LMSKMTN EWKET  DN+STV E ENRPPRLGLGAK++ QFRNGPSNDPLDRKLYAKLDAGKKQAARK+ ED
Subjt:  MSNKMEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISED

Query:  TPELKNEDDDE-DDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR
        TP + NEDDD+ DDEEES+TAMF KKRAPTRVTMPPL  KKKRR
Subjt:  TPELKNEDDDE-DDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR

A0A6J1KE33 uncharacterized protein LOC111494843

1.5e-53

80.56

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Query:  MSNKMEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISED
        MS+ ME+PQK +PPE+IKLN+AAKLAA+LMSKMTN EWKET  DN+STV E ENRPPRLGLGAK++ QFRNGPSNDPLDRKLYAKLDAGKKQAARK+ ED
Subjt:  MSNKMEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISED

Query:  TPELKNEDDDE-DDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR
        T  L NEDDD+ DDEEESKTAMF KKRAPTRVTMPP   KKKRR
Subjt:  TPELKNEDDDE-DDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G61370.1 Protein of unknown function (DUF3245)

6.7e-14

41.27

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Query:  EKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISEDTPELK
        E  +K   P++ K + A KLA + ++ MT        ED+    A+ E RP RLGLGA+V+ Q +  PS+DPLD+KL AK  A K++ AR ++E     K
Subjt:  EKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISEDTPELK

Query:  N--EDDDEDDEEESKTAMFSKKRAPT
        N  +D ++DDE ESK+  F KK+  T
Subjt:  N--EDDDEDDEEESKTAMFSKKRAPT

AT4G07940.1 Protein of unknown function (DUF3245)

6.5e-09

38.38

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Query:  MTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISEDTPELKN--EDDDEDDEEESKTAMFSKKRAPT
        MT    K+ G        +      +LGLGA+V+ Q +  PS+DPLD+KL AK  AGK++ AR ++E     KN  +D+++ DE ESK+  F  K+  T
Subjt:  MTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISEDTPELKN--EDDDEDDEEESKTAMFSKKRAPT

Sequences

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CDS sequence

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ATGAGCAACAAGATGGAGAAGCCGCAGAAACCTAGACCTCCCGAAGTTATTAAGTTGAATAACGCAGCGAAATTGGCAGCGCAGTTGATGAGCAAGATGACAAATTCTGA
GTGGAAAGAAACTGGAGAAGATAATGAATCAACTGTGGCAGAGCTCGAGAATCGACCTCCTAGACTTGGACTTGGAGCCAAAGTAACGCACCAGTTCAGAAATGGACCTT
CAAATGACCCACTTGATAGAAAACTATATGCCAAGTTGGATGCTGGGAAAAAGCAAGCTGCTAGAAAGATATCGGAGGATACTCCCGAACTTAAGAATGAAGATGATGAT
GAGGACGATGAAGAAGAGAGTAAAACTGCCATGTTTAGTAAGAAGCGAGCACCAACTCGAGTAACTATGCCTCCTTTGCAGGGCAAGAAAAAACGAAGGTAG

mRNA sequence

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CAATTTTCTTTATTGTTTTTATTTACTTTATTTCTTATCTTTCTCTCTCACGCACTCACCCAGGCACGTCCTTCCCATTCCGGCGGCAGCACCTCACCGTCGTCGTTATT
CTCCGGCGAGCACGTTCTCCCGTTGTCTAACCTTAACTTGCGTCGGCGACTTCGCAGTGTATTTGCGGGCTTGAAGTTGAAGCGGCAAGCTCAATGAGCAACAAGATGGA
GAAGCCGCAGAAACCTAGACCTCCCGAAGTTATTAAGTTGAATAACGCAGCGAAATTGGCAGCGCAGTTGATGAGCAAGATGACAAATTCTGAGTGGAAAGAAACTGGAG
AAGATAATGAATCAACTGTGGCAGAGCTCGAGAATCGACCTCCTAGACTTGGACTTGGAGCCAAAGTAACGCACCAGTTCAGAAATGGACCTTCAAATGACCCACTTGAT
AGAAAACTATATGCCAAGTTGGATGCTGGGAAAAAGCAAGCTGCTAGAAAGATATCGGAGGATACTCCCGAACTTAAGAATGAAGATGATGATGAGGACGATGAAGAAGA
GAGTAAAACTGCCATGTTTAGTAAGAAGCGAGCACCAACTCGAGTAACTATGCCTCCTTTGCAGGGCAAGAAAAAACGAAGGTAGTTACTTTTCTAGGTAGGGAATTTGT
TTATCAAACCTGTTGTCTCACATTATAGAAATGATGAAGATCTTATTAGGTCTCAACCTAGAGGTATTTAATAAGTCCATAAGAAAGTACCAAACTAGTGGAAGATATTA
ACAAGGGACTGATGTCTCGTCAATATATTTTGTAAAACTATCCCTTGATAATTTTTTTTTTGGTTGAAGATGACATTTCTATTATAGATGATTGTTTGAGTCTTAAATCA
TGATGTTGCAAAGATAACGTTACAGTAGTTGCCTAGAATTTTGGTTTAAAAGGCATTTTTGTATATGACTGTTCGTATGATTGAACTTATTAATTTAATTGATGTGTCAT
GAGATCTCTTTGAGA

Protein sequence

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MSNKMEKPQKPRPPEVIKLNNAAKLAAQLMSKMTNSEWKETGEDNESTVAELENRPPRLGLGAKVTHQFRNGPSNDPLDRKLYAKLDAGKKQAARKISEDTPELKNEDDD
EDDEEESKTAMFSKKRAPTRVTMPPLQGKKKRR

Sed0001004 (gene) of Chayote v1 genome