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Sed0001005 (gene) of Chayote v1 genome

Gene IDSed0001005
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG02:47253291..47253755
RNA-Seq ExpressionSed0001005
SyntenySed0001005
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7819670.1 uncharacterized protein G2W53_025125 [Senna tora]9.4e-0833.61Show/hide
Query:  VIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLAH
        +IRN  G  +++M K       V  +EA+ V EGL++A++M     EVE DS  +  LL +     + L  I+++I +++S   FVSF W  R+   LAH
Subjt:  VIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLAH

Query:  ALAKLAIP-MDEE---AIWVEE
         LA   +  MD+     +W+E+
Subjt:  ALAKLAIP-MDEE---AIWVEE

KAF7821986.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora]4.2e-0831.15Show/hide
Query:  VIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLAH
        V+RN+ G  +++M+K V     ++ VEA+ VLEG+  A+ M   R  +E D+  +VNLL +    I+ L  +++EI ++ S  + +SF+W  R+   +AH
Subjt:  VIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLAH

Query:  ALAKLAIPMDEEA----IWVEE
         LA   +     +    +W+E+
Subjt:  ALAKLAIPMDEEA----IWVEE

KAG8473535.1 hypothetical protein CXB51_035829 [Gossypium anomalum]7.2e-0830.3Show/hide
Query:  MVIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLA
        ++ RN  GE M S   P   + D    EA   L+ + MAE +GFQ  +VE D+ +++  +   ++  + +   ++EI + A     + F    R+   +A
Subjt:  MVIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLA

Query:  HALAKLAIPMDEEAIWVEEVLMAMEELYNREK
        H LAK     D+   W+EEV   ME+L NR++
Subjt:  HALAKLAIPMDEEAIWVEEVLMAMEELYNREK

XP_030942039.1 uncharacterized protein LOC115967096 [Quercus lobata]5.5e-0832.2Show/hide
Query:  VIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLAH
        VIRNEKGE M ++A     V D + VE M   + L  A   GF    +E D+  ++ ++ +    ++ L  I ++IW +A+    +S++   R    +AH
Subjt:  VIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLAH

Query:  ALAKLAIPMDEEAIWVEE
        +LA+ A  +D E +W+EE
Subjt:  ALAKLAIPMDEEAIWVEE

XP_030958792.1 uncharacterized protein LOC115980708 [Quercus lobata]1.2e-0731.36Show/hide
Query:  VIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLAH
        VIRNEKG+ M ++A     V D + VE M   + L  A  +GF    +E D+  ++ ++ +    +++L  I ++IW +A+    +S++   R    +AH
Subjt:  VIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLAH

Query:  ALAKLAIPMDEEAIWVEE
        +LA+ A  +D E +W+EE
Subjt:  ALAKLAIPMDEEAIWVEE

TrEMBL top hitse value%identityAlignment
A0A5B6V4L7 Reverse transcriptase3.0e-0729.55Show/hide
Query:  MVIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLA
        ++ RN++G  M +   P   + +    EA   L+ ++MAE MGFQ   +E D+ S++  L+   +  + ++ ++KEI         VSF +  R+   +A
Subjt:  MVIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLA

Query:  HALAKLAIPMDEEAIWVEEVLMAMEELYNREK
        HA+A+     ++   W+EE   A+E L N+EK
Subjt:  HALAKLAIPMDEEAIWVEEVLMAMEELYNREK

A0A5C7IIT4 Uncharacterized protein1.0e-0732.28Show/hide
Query:  MVIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLA
        +VIR+  G  M S+ +   G++  Q VEA+ VL G  +A   G     +E DS S+VNL+        E+  ++ +I  + S   F S  +  R    +A
Subjt:  MVIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLA

Query:  HALAKLAIPMDEEAIWVEEVLMAMEEL
        H+LAKL++  + E +W+E+  +A+E L
Subjt:  HALAKLAIPMDEEAIWVEEVLMAMEEL

A0A6J1CIF1 uncharacterized protein LOC1110112371.0e-0729.41Show/hide
Query:  MVIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLA
        ++IRN++G+ M S  K +  +  V   EA+V +EGL +A  +G     +E DS+ I NL  + ++ ++E  +IV +     ++    SF++  R+    A
Subjt:  MVIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLA

Query:  HALAKLAIPMDEEAIWVEEVLMAMEELYNREKIEFL
        H LA+ A+ + E +IW+E+  + ++     E +E L
Subjt:  HALAKLAIPMDEEAIWVEEVLMAMEELYNREKIEFL

A0A6P4PAK8 uncharacterized protein LOC1084814123.0e-0728.03Show/hide
Query:  MVIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLA
        ++ RN++GE M +   P   ++D    EA   L+   MAE +GFQ  EVE D+ +++  L   ++  + +   ++EI + A     + F    R+   +A
Subjt:  MVIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLA

Query:  HALAKLAIPMDEEAIWVEEVLMAMEELYNREK
        H L +     ++   W+EEV   +E+L NR++
Subjt:  HALAKLAIPMDEEAIWVEEVLMAMEELYNREK

A0A7J8WZ51 RNase H domain-containing protein2.3e-0730.53Show/hide
Query:  VIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLAH
        +IRNEKGE M S       ++DV   EA+   +GLL A+ MGF   EVE D+  ++  + +      +L+ ++ +I    S    +SF    R+   +AH
Subjt:  VIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLAH

Query:  ALAKLAIPMDEEAIWVEEVLMAMEELYNREK
         +AK      E   W+E++    +EL   E+
Subjt:  ALAKLAIPMDEEAIWVEEVLMAMEELYNREK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATTCGAAACGAAAAAGGTGAAGCTATGATTTCCATGGCCAAACCTGTTTACGGAGTTATAGATGTGCAACGGGTTGAGGCTATGGTAGTTCTAGAGGGTTTATT
GATGGCAGAGGCGATGGGCTTTCAGCGTTTTGAGGTCGAGTTGGATTCGACTTCAATTGTGAATCTCCTACAACGGACAACGAAATGCATCACTGAATTGAACAAAATCG
TGAAGGAAATTTGGAAAATTGCAAGCCGCCTTACTTTTGTGTCGTTCCATTGGTGTGGTCGAAAGATGAAAAATTTGGCACATGCTCTAGCAAAATTGGCAATTCCCATG
GATGAAGAAGCAATTTGGGTGGAGGAAGTCCTGATGGCCATGGAAGAGCTTTACAATCGAGAGAAGATTGAGTTTCTTAGTGATCCTGCAAGTGTTTCTATTCAACACCA
TTTTTGTAATTCATGCTTTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGATTCGAAACGAAAAAGGTGAAGCTATGATTTCCATGGCCAAACCTGTTTACGGAGTTATAGATGTGCAACGGGTTGAGGCTATGGTAGTTCTAGAGGGTTTATT
GATGGCAGAGGCGATGGGCTTTCAGCGTTTTGAGGTCGAGTTGGATTCGACTTCAATTGTGAATCTCCTACAACGGACAACGAAATGCATCACTGAATTGAACAAAATCG
TGAAGGAAATTTGGAAAATTGCAAGCCGCCTTACTTTTGTGTCGTTCCATTGGTGTGGTCGAAAGATGAAAAATTTGGCACATGCTCTAGCAAAATTGGCAATTCCCATG
GATGAAGAAGCAATTTGGGTGGAGGAAGTCCTGATGGCCATGGAAGAGCTTTACAATCGAGAGAAGATTGAGTTTCTTAGTGATCCTGCAAGTGTTTCTATTCAACACCA
TTTTTGTAATTCATGCTTTGTTTAA
Protein sequenceShow/hide protein sequence
MVIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLAHALAKLAIPM
DEEAIWVEEVLMAMEELYNREKIEFLSDPASVSIQHHFCNSCFV