; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0001024 (gene) of Chayote v1 genome

Gene IDSed0001024
OrganismSechium edule (Chayote v1)
DescriptionNucleic acid-binding, OB-fold-like protein
Genome locationLG04:43026846..43029190
RNA-Seq ExpressionSed0001024
SyntenySed0001024
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144523.1 uncharacterized protein At4g28440 [Cucumis sativus]2.2e-6792.41Show/hide
Query:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKI
        MATP  NAPAKRKPVF+KVEELKPGTSGHTLTVKVVS+KNVKVVNKGGRSTMLT RPQQLTRISECLVGDETGSIVFTARNDQVD+MKP + VTLRNAKI
Subjt:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVE AEPANFE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

XP_008455497.1 PREDICTED: uncharacterized protein At4g28440 [Cucumis melo]4.5e-6893.79Show/hide
Query:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKI
        MATP  NAPAKRKPVF+KVEELKPGTSGHTLTVKVVS+KNVKVVNKGGRSTMLT RPQQLTRISECLVGDETGSIVFTARNDQVDIMKP + VTLRNAKI
Subjt:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVE AEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

XP_022136009.1 uncharacterized protein At4g28440-like [Momordica charantia]5.5e-6691.72Show/hide
Query:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKI
        MAT  VNAPAKRKPVFIKVEELKPGTSGHTL VKVVS+KNVK+VNKGGRS MLT RPQQLTRISECLVGDETGSIVFTARNDQVDIMKP + VTLRNAKI
Subjt:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+E AEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

XP_022988994.1 uncharacterized protein At4g28440-like [Cucurbita maxima]1.6e-6590.34Show/hide
Query:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKI
        MATP VNAPAKRKPVFIKVE+LKPG+SGHTLTVKVVS+KNVKVVNKGGRS M T RPQQLTRISECLVGDETGSIVFTARNDQVD+MKP + VTLRNAKI
Subjt:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+E AEPA+FEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

XP_038887250.1 uncharacterized protein At4g28440-like [Benincasa hispida]1.5e-6894.48Show/hide
Query:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKI
        MATP VNAPAKRKPVF+KVEELKPGTSGHTLTVKVVS+KNVKVVNKGGRSTMLT RPQQLTRISECLVGDETGSIVFTARNDQVDIMKP + VTLRNAKI
Subjt:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVE AEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

TrEMBL top hitse value%identityAlignment
A0A0A0K1C6 Uncharacterized protein1.1e-6792.41Show/hide
Query:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKI
        MATP  NAPAKRKPVF+KVEELKPGTSGHTLTVKVVS+KNVKVVNKGGRSTMLT RPQQLTRISECLVGDETGSIVFTARNDQVD+MKP + VTLRNAKI
Subjt:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVE AEPANFE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

A0A1S3C119 uncharacterized protein At4g284402.2e-6893.79Show/hide
Query:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKI
        MATP  NAPAKRKPVF+KVEELKPGTSGHTLTVKVVS+KNVKVVNKGGRSTMLT RPQQLTRISECLVGDETGSIVFTARNDQVDIMKP + VTLRNAKI
Subjt:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVE AEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

A0A5A7UWS4 Uncharacterized protein2.2e-6893.79Show/hide
Query:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKI
        MATP  NAPAKRKPVF+KVEELKPGTSGHTLTVKVVS+KNVKVVNKGGRSTMLT RPQQLTRISECLVGDETGSIVFTARNDQVDIMKP + VTLRNAKI
Subjt:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVE AEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

A0A6J1C327 uncharacterized protein At4g28440-like2.7e-6691.72Show/hide
Query:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKI
        MAT  VNAPAKRKPVFIKVEELKPGTSGHTL VKVVS+KNVK+VNKGGRS MLT RPQQLTRISECLVGDETGSIVFTARNDQVDIMKP + VTLRNAKI
Subjt:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+E AEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

A0A6J1JN47 uncharacterized protein At4g28440-like7.7e-6690.34Show/hide
Query:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKI
        MATP VNAPAKRKPVFIKVE+LKPG+SGHTLTVKVVS+KNVKVVNKGGRS M T RPQQLTRISECLVGDETGSIVFTARNDQVD+MKP + VTLRNAKI
Subjt:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+E AEPA+FEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284403.8e-4665.49Show/hide
Query:  ATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKID
        A  T  +  KRKPVF+KVE+LKPGT+GHTLTVKV+ A  V  V +  R      RP Q +RI ECL+GDETG I+FTARNDQVD+MKP + V LRN++ID
Subjt:  ATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKID

Query:  MFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNV
        MFKG+MRL VDKWGR+EA   A+F VKEDNNLSLVEYEL+NV
Subjt:  MFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNV

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein2.4e-4367.65Show/hide
Query:  AKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKIDMFKGSMRL
        A RKPVF KV EL+PGT+GH+L VKVV   N K+V + G    + P+ +Q+ RI+ECLVGDETG I+FTARNDQVD+MK  S VTLRNAKIDM+KGSMRL
Subjt:  AKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKIDMFKGSMRL

Query:  AVDKWGRVEAA-EPANFEVKEDNNLSLVEYELVNVE
        AVD+WGRVE A EP +  VK+DNNLSL+EYELV+VE
Subjt:  AVDKWGRVEAA-EPANFEVKEDNNLSLVEYELVNVE

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein2.4e-4367.65Show/hide
Query:  AKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKIDMFKGSMRL
        A RKPVF KV EL+PGT+GH+L VKVV   N K+V + G    + P+ +Q+ RI+ECLVGDETG I+FTARNDQVD+MK  S VTLRNAKIDM+KGSMRL
Subjt:  AKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKIDMFKGSMRL

Query:  AVDKWGRVEAA-EPANFEVKEDNNLSLVEYELVNVE
        AVD+WGRVE A EP +  VK+DNNLSL+EYELV+VE
Subjt:  AVDKWGRVEAA-EPANFEVKEDNNLSLVEYELVNVE

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein6.3e-4468.66Show/hide
Query:  RKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKIDMFKGSMRLAV
        +KP F KV++L+PGTSGH + VK+VS    K+V + GR+    P+ +QL RISEC+VGDETG IVFTARNDQVD+MK  S VTLRNAKIDM+KGSMRLAV
Subjt:  RKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKIDMFKGSMRLAV

Query:  DKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DKWGRVE  EPA+F+VKED N+SL+EYELVNV E
Subjt:  DKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein3.9e-4670.37Show/hide
Query:  KRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKIDMFKGSMRLA
        K+KPVF+KV++LKPGTSGHTLTVKVV   +V        S+ L P      RISECLVGDET  I+FTARNDQV++MKP + V LRNAKIDMFKGSMRLA
Subjt:  KRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKIDMFKGSMRLA

Query:  VDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        VDKWGR+EA EPA+  VKEDNNLSLVEYELVNV E
Subjt:  VDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

AT4G28440.1 Nucleic acid-binding, OB-fold-like protein2.7e-4765.49Show/hide
Query:  ATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKID
        A  T  +  KRKPVF+KVE+LKPGT+GHTLTVKV+ A  V  V +  R      RP Q +RI ECL+GDETG I+FTARNDQVD+MKP + V LRN++ID
Subjt:  ATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKID

Query:  MFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNV
        MFKG+MRL VDKWGR+EA   A+F VKEDNNLSLVEYEL+NV
Subjt:  MFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGCCGACAGTGAACGCACCGGCGAAGAGGAAGCCTGTCTTCATCAAAGTAGAAGAGCTAAAGCCTGGTACGAGCGGCCATACTCTCACGGTCAAGGTCGTTAG
CGCCAAAAATGTCAAGGTTGTCAATAAAGGTGGACGATCCACCATGCTTACGCCTCGCCCTCAGCAATTAACTCGTATTTCTGAATGTCTTGTTGGCGATGAGACTGGTT
CCATCGTTTTCACAGCTCGAAATGATCAAGTTGATATCATGAAGCCAGAAAGCTATGTGACCCTGAGGAATGCAAAGATCGACATGTTTAAAGGTTCGATGAGGTTAGCA
GTAGATAAATGGGGACGAGTTGAAGCTGCTGAGCCAGCTAACTTTGAAGTTAAAGAGGACAACAATCTGTCACTGGTTGAATATGAATTGGTTAATGTTGAAGAGTGA
mRNA sequenceShow/hide mRNA sequence
CAAATTCTTAGAATTAGGGTTTTAACCCTCGAGTTCAATTTCATTCTCCATTTTCACGTATCACTCTCATCGGCAACAAAGTTTCGTATCGTCGCTTCGATTTCCATGGC
GACGCCGACAGTGAACGCACCGGCGAAGAGGAAGCCTGTCTTCATCAAAGTAGAAGAGCTAAAGCCTGGTACGAGCGGCCATACTCTCACGGTCAAGGTCGTTAGCGCCA
AAAATGTCAAGGTTGTCAATAAAGGTGGACGATCCACCATGCTTACGCCTCGCCCTCAGCAATTAACTCGTATTTCTGAATGTCTTGTTGGCGATGAGACTGGTTCCATC
GTTTTCACAGCTCGAAATGATCAAGTTGATATCATGAAGCCAGAAAGCTATGTGACCCTGAGGAATGCAAAGATCGACATGTTTAAAGGTTCGATGAGGTTAGCAGTAGA
TAAATGGGGACGAGTTGAAGCTGCTGAGCCAGCTAACTTTGAAGTTAAAGAGGACAACAATCTGTCACTGGTTGAATATGAATTGGTTAATGTTGAAGAGTGACTTGGAA
TAGTGCAATGTTAATTTATCTTGGATTTACTTTCTCTATCGTGTGGTGGACTGCTATTTAACTGGTATACAGTTTTATATGGCAACACAAATCTTATTGTGGGTAATATA
AGTTGATTATTGCTGTTACTACTATGCCCTTTTGTTTCTATCTGCTTAAATTTGGTTCAGATGTGATAAAAAATTTGGAAAGGCAATTGCAAATAATACTTTCTGTTCTT
TTGGTTGCCCCATA
Protein sequenceShow/hide protein sequence
MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSAKNVKVVNKGGRSTMLTPRPQQLTRISECLVGDETGSIVFTARNDQVDIMKPESYVTLRNAKIDMFKGSMRLA
VDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE