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Sed0001059 (gene) of Chayote v1 genome

Gene IDSed0001059
OrganismSechium edule (Chayote v1)
Descriptiontranslation initiation factor eIF-2B subunit gamma-like
Genome locationLG08:9953097..9961558
RNA-Seq ExpressionSed0001059
SyntenySed0001059
Gene Ontology termsGO:0002183 - cytoplasmic translational initiation (biological process)
GO:0050790 - regulation of catalytic activity (biological process)
GO:0005851 - eukaryotic translation initiation factor 2B complex (cellular component)
GO:0032045 - guanyl-nucleotide exchange factor complex (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0005085 - guanyl-nucleotide exchange factor activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR001451 - Hexapeptide repeat
IPR011004 - Trimeric LpxA-like superfamily
IPR029044 - Nucleotide-diphospho-sugar transferases


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022037.1 Translation initiation factor eIF-2B subunit gamma [Cucurbita argyrosperma subsp. argyrosperma]7.1e-1988.71Show/hide
Query:  ELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGEAVALRIGSWISEAYEGRLRVEVGPH
        ELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGE VAL IGSWIS AY+GRLRVE   H
Subjt:  ELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGEAVALRIGSWISEAYEGRLRVEVGPH

KAG7022037.1 Translation initiation factor eIF-2B subunit gamma [Cucurbita argyrosperma subsp. argyrosperma]2.1e-4794Show/hide
Query:  RVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
        +  VGPHCM+GEGSQMGDKCSVKRSVIGRHCRIGSNVKIANS+VMDHVTIGDGCS+QGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
Subjt:  RVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK

XP_023530392.1 translation initiation factor eIF-2B subunit gamma-like isoform X1 [Cucurbita pepo subsp. pepo]2.1e-4794Show/hide
Query:  RVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
        +  VGPHCM+GEGSQMGDKCSVKRSVIGRHCRIGSNVKIANS+VMDHVTIGDGCS+QGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
Subjt:  RVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK

XP_023530392.1 translation initiation factor eIF-2B subunit gamma-like isoform X1 [Cucurbita pepo subsp. pepo]1.2e-1893.22Show/hide
Query:  ELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGEAVALRIGSWISEAYEGRLRVEV
        ELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGE VAL IGSWIS AY+GRLRVEV
Subjt:  ELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGEAVALRIGSWISEAYEGRLRVEV

XP_023530392.1 translation initiation factor eIF-2B subunit gamma-like isoform X1 [Cucurbita pepo subsp. pepo]2.1e-4794Show/hide
Query:  RVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
        +  VGPHCM+GEGSQMGDKCSVKRSVIGRHCRIGSNVKIANS+VMDHVTIGDGCS+QGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
Subjt:  RVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK

XP_038878285.1 translation initiation factor eIF-2B subunit gamma [Benincasa hispida]1.6e-4795Show/hide
Query:  RVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
        +  VGPHCM+GEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCS+QGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
Subjt:  RVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK

XP_038878285.1 translation initiation factor eIF-2B subunit gamma [Benincasa hispida]3.5e-1891.53Show/hide
Query:  ELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGEAVALRIGSWISEAYEGRLRVEV
        ELPKALLPVANRPVLSYVLELLELSNLKD+IVVAEGE VALRIGSWIS AY+ RLRVEV
Subjt:  ELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGEAVALRIGSWISEAYEGRLRVEV

XP_038878285.1 translation initiation factor eIF-2B subunit gamma [Benincasa hispida]1.6e-4795Show/hide
Query:  RVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
        +  VGPHCM+GEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCS+QGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
Subjt:  RVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK

TrEMBL top hitse value%identityAlignment
A0A6J1D1K9 translation initiation factor eIF-2B subunit gamma9.9e-1993.22Show/hide
Query:  ELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGEAVALRIGSWISEAYEGRLRVEV
        ELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGE VALRIGSWIS AY+ RLRVEV
Subjt:  ELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGEAVALRIGSWISEAYEGRLRVEV

A0A6J1F083 translation initiation factor eIF-2B subunit gamma-like isoform X11.3e-4797.94Show/hide
Query:  VGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
        VGPHCM+GEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCS+QGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
Subjt:  VGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK

A0A6J1F083 translation initiation factor eIF-2B subunit gamma-like isoform X15.8e-1993.22Show/hide
Query:  ELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGEAVALRIGSWISEAYEGRLRVEV
        ELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGE VAL IGSWIS AY+GRLRVEV
Subjt:  ELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGEAVALRIGSWISEAYEGRLRVEV

A0A6J1F083 translation initiation factor eIF-2B subunit gamma-like isoform X12.3e-4794Show/hide
Query:  RVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
        +  VGPHCM+GEGSQMGDKCSVKRSVIGRHCRIGSNVKI NSVVMDHVTIGDGCS+QGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
Subjt:  RVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK

A0A6J1HQN8 translation initiation factor eIF-2B subunit gamma-like isoform X21.0e-4794Show/hide
Query:  RVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
        +  VGPHCM+GEGSQMGDKCSVKRSVIGRHCRIGSNVKIANS+VMDHVTIGDGCS+QGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
Subjt:  RVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK

A0A6J1HUW4 translation initiation factor eIF-2B subunit gamma-like isoform X11.0e-4794Show/hide
Query:  RVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
        +  VGPHCM+GEGSQMGDKCSVKRSVIGRHCRIGSNVKIANS+VMDHVTIGDGCS+QGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
Subjt:  RVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK

A0A6J1HUW4 translation initiation factor eIF-2B subunit gamma-like isoform X15.8e-1993.22Show/hide
Query:  ELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGEAVALRIGSWISEAYEGRLRVEV
        ELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGE VAL IGSWIS AY+GRLRVEV
Subjt:  ELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGEAVALRIGSWISEAYEGRLRVEV

A0A6J1HUW4 translation initiation factor eIF-2B subunit gamma-like isoform X11.3e-4797.94Show/hide
Query:  VGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
        VGPHCM+GEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCS+QGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
Subjt:  VGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK

SwissProt top hitse value%identityAlignment
P56288 Probable translation initiation factor eIF-2B subunit gamma1.1e-1435Show/hide
Query:  RVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
        R  VG  CM+ EG+ + D  ++K+S+IG++C IG  V ++NS++MD++ + DG  ++  ++ S  Q+  ++ LR+C++G    V A    +GE L   EK
Subjt:  RVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK

P70541 Translation initiation factor eIF-2B subunit gamma9.3e-1436.08Show/hide
Query:  VGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
        +G   ++G  +Q+G+K S+KRSVIG  C I   V + N ++M+ VT+ +G S+ GSVIC+N  ++  A +RDC +G+G  + A  +   E +   ++
Subjt:  VGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK

Q4R6T3 Translation initiation factor eIF-2B subunit gamma9.3e-1437.11Show/hide
Query:  VGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
        VG   ++G  +Q+G+K S+KRSVIG  C I   V I N ++M+ VT+ +G ++QGSVIC+N  +++ A ++DC +G+G  + A  +   E +   ++
Subjt:  VGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK

Q54FQ8 Translation initiation factor eIF-2B subunit gamma2.9e-1550Show/hide
Query:  EVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQ
        +VGP C++G  + +G KCSVK S+IG+HC+IG  V+I NS++MDHV I D C +  S+IC++V ++
Subjt:  EVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQ

Q9NR50 Translation initiation factor eIF-2B subunit gamma9.3e-1437.11Show/hide
Query:  VGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK
        VG   ++G  +Q+G+K S+KRSVIG  C I   V I N ++M+ VT+ +G ++QGSVIC+N  +++ A ++DC +G+G  + A  +   E +   ++
Subjt:  VGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK

Arabidopsis top hitse value%identityAlignment
AT2G34970.1 Trimeric LpxA-like enzyme4.4e-1137.36Show/hide
Query:  EVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLR-------DCQVGAGFVVTA
        +VG   ++G G+++G    +  SVIG  C IGSNV I  S + ++VTI DGC ++ +++C  V+++  AVL+       +  VG  FVV A
Subjt:  EVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLR-------DCQVGAGFVVTA

AT3G02270.1 Trimeric LpxA-like enzyme4.1e-0933.33Show/hide
Query:  VGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLR-------DCQVGAGFVVTA
        VG   ++G  + +G    +  SVIG  C IGSNV I  S + ++VT+ DGC ++ +++C  V++   A+++          VG  FVV A
Subjt:  VGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLR-------DCQVGAGFVVTA

AT4G18300.1 Trimeric LpxA-like enzyme9.9e-1137.36Show/hide
Query:  EVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLR-------DCQVGAGFVVTA
        +VG   ++G G+++G+   +  SVIG  C IGSNV I  S + ++VTI DGC ++ +++C  V+++  AVL+          VG  FVV A
Subjt:  EVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLR-------DCQVGAGFVVTA

AT5G19485.1 transferases;nucleotidyltransferases1.7e-4280.61Show/hide
Query:  RVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARK
        +  VGPHCM+GEGSQ+GDKCSVKRSVIGRHCRIGSNVKI NSVVMDH TIGDGCS+QGSVICSN QLQER  LRDCQV AG+VV A  E+KGE  ARK
Subjt:  RVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARK

AT5G19485.1 transferases;nucleotidyltransferases2.4e-1776.27Show/hide
Query:  ELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGEAVALRIGSWISEAYEGRLRVEV
        E+PKALLPVANRPVLSYVL+LLE SNLKDLIVV EGE  AL++G WIS A   RL VEV
Subjt:  ELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGEAVALRIGSWISEAYEGRLRVEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCTTCCCAAAGCGCTGCTGCCGGTCGCGAATCGTCCGGTTCTCTCGTACGTTTTGGAGCTCTTAGAACTCAGTAACCTTAAGGATCTAATTGTGGTGGCTGAAGG
TGAAGCTGTTGCTCTTCGTATTGGGAGTTGGATATCTGAGGCTTATGAAGGTCGTCTACGTGTAGAGGTGGGACCCCATTGTATGATGGGAGAAGGTTCACAGATGGGCG
ACAAATGTAGCGTGAAACGGTCAGTAATTGGCCGCCATTGCCGAATAGGTTCGAATGTGAAAATCGCTAATTCCGTCGTCATGGATCATGTTACCATTGGAGATGGTTGT
TCAGTTCAAGGTTCGGTTATCTGCAGCAACGTACAACTTCAGGAGCGTGCTGTTTTGAGAGACTGTCAAGTGGGAGCAGGTTTTGTGGTGACTGCTGCCTGTGAGTACAA
AGGAGAGGCCTTGGCTAGAAAAGAAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCTTCCCAAAGCGCTGCTGCCGGTCGCGAATCGTCCGGTTCTCTCGTACGTTTTGGAGCTCTTAGAACTCAGTAACCTTAAGGATCTAATTGTGGTGGCTGAAGG
TGAAGCTGTTGCTCTTCGTATTGGGAGTTGGATATCTGAGGCTTATGAAGGTCGTCTACGTGTAGAGGTGGGACCCCATTGTATGATGGGAGAAGGTTCACAGATGGGCG
ACAAATGTAGCGTGAAACGGTCAGTAATTGGCCGCCATTGCCGAATAGGTTCGAATGTGAAAATCGCTAATTCCGTCGTCATGGATCATGTTACCATTGGAGATGGTTGT
TCAGTTCAAGGTTCGGTTATCTGCAGCAACGTACAACTTCAGGAGCGTGCTGTTTTGAGAGACTGTCAAGTGGGAGCAGGTTTTGTGGTGACTGCTGCCTGTGAGTACAA
AGGAGAGGCCTTGGCTAGAAAAGAAAAATGA
Protein sequenceShow/hide protein sequence
MELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGEAVALRIGSWISEAYEGRLRVEVGPHCMMGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGC
SVQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK