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Sed0001061 (gene) of Chayote v1 genome

Gene IDSed0001061
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L34
Genome locationLG06:46069124..46074533
RNA-Seq ExpressionSed0001061
SyntenySed0001061
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000271 - Ribosomal protein L34
IPR020939 - Ribosomal protein L34, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581832.1 hypothetical protein SDJN03_21834, partial [Cucurbita argyrosperma subsp. sororia]8.4e-5881.63Show/hide
Query:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDGDTSSSQEPM
        MASKLL+RTGN L+NRLR S THQN+ I + QSL  GHG + TPMLFPS+S+HQT H LQ ND ESLRKL+SE IFFPFGLPSL FFLPDG+TSS+QEPM
Subjt:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDGDTSSSQEPM

Query:  LLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LL PKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

KAG7036420.1 Polyadenylate-binding protein-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma]9.9e-5974.25Show/hide
Query:  GRTKPFLIISLGFSELAHSKMASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFG
        G  +P + + LG+  LAH  MAS LL+RTGN LINRLR +  HQ  RI  PQ+L HGH AE TPMLFPSLS+HQT   LQ ND ES+RKL+SE IFFPFG
Subjt:  GRTKPFLIISLGFSELAHSKMASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFG

Query:  LPSLPFFLPDGDTSSSQEPMLLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LPSL FFLPDG+ S++QEPMLL PKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LPSLPFFLPDGDTSSSQEPMLLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

XP_004141160.2 uncharacterized protein LOC101210601 [Cucumis sativus]3.4e-5977.5Show/hide
Query:  IISLGFSELAHSKMASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFF
        ++ L  SEL    MASKLL+RTG+ L+NRLR S  HQN+RI   Q+L HGHG E TPMLFPS+S+HQT H LQ ND ESLR+LQSE IFFPFGLPSL FF
Subjt:  IISLGFSELAHSKMASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFF

Query:  LPDGDTSSSQEPMLLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LPDGD SS+QEPMLL PKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LPDGDTSSSQEPMLLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

XP_022955352.1 uncharacterized protein LOC111457406 isoform X2 [Cucurbita moschata]2.2e-5882.31Show/hide
Query:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDGDTSSSQEPM
        MASKLL+RTGN L+NRLR S THQN+ I + QSL  GHG + TPMLFPS+S+HQT H LQ ND ESLRKL+SE IFFPFGLPSL FFLPDGDTSS+QEPM
Subjt:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDGDTSSSQEPM

Query:  LLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LL PKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

XP_023526192.1 uncharacterized protein LOC111789743 isoform X2 [Cucurbita pepo subsp. pepo]1.1e-5781.63Show/hide
Query:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDGDTSSSQEPM
        MASKLL+RTGN L+NRLR S THQN+ I + QSL  GHG + TPMLFPS+S+HQ  H LQ ND ESLRKL+SE IFFPFGLPSL FFLPDGDTSS+QEPM
Subjt:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDGDTSSSQEPM

Query:  LLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LL PKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

TrEMBL top hitse value%identityAlignment
A0A0A0LIB6 Uncharacterized protein1.7e-5977.5Show/hide
Query:  IISLGFSELAHSKMASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFF
        ++ L  SEL    MASKLL+RTG+ L+NRLR S  HQN+RI   Q+L HGHG E TPMLFPS+S+HQT H LQ ND ESLR+LQSE IFFPFGLPSL FF
Subjt:  IISLGFSELAHSKMASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFF

Query:  LPDGDTSSSQEPMLLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LPDGD SS+QEPMLL PKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LPDGDTSSSQEPMLLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

A0A1S3BHV7 uncharacterized protein LOC1034900286.9e-5880.95Show/hide
Query:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDGDTSSSQEPM
        MASKLL+RTGN  +NRLR S  HQN+RI   Q+L HGHG E TPMLFPS+S+HQ  H LQ ND ESLR+LQSE IFFPFGLPSL FFLPDGD SS+QEPM
Subjt:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDGDTSSSQEPM

Query:  LLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LL PKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

A0A6J1GTQ0 uncharacterized protein LOC111457406 isoform X21.1e-5882.31Show/hide
Query:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDGDTSSSQEPM
        MASKLL+RTGN L+NRLR S THQN+ I + QSL  GHG + TPMLFPS+S+HQT H LQ ND ESLRKL+SE IFFPFGLPSL FFLPDGDTSS+QEPM
Subjt:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDGDTSSSQEPM

Query:  LLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LL PKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

A0A6J1IXD9 uncharacterized protein LOC111480019 isoform X22.0e-5781.63Show/hide
Query:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDGDTSSSQEPM
        MASKLL+RTGN L+NRLR S T QN+ I + QSL  GHG + TPMLFPS+S+HQT H LQ ND ESLRKL+SE IFFPFGLPSL FFLPDGDTSS+QEPM
Subjt:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDGDTSSSQEPM

Query:  LLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LL PKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

A0A6J1KF33 uncharacterized protein LOC1114926749.1e-5881.63Show/hide
Query:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDGDTSSSQEPM
        MAS LL+RTGN LINRLR + THQ  RI  PQ+L HGHGAE TPMLFPSLS+HQT   LQ ND E++RKL+SE IFFPFGLPSL FFLPDGD SS+QEPM
Subjt:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDGDTSSSQEPM

Query:  LLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LL PKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

SwissProt top hitse value%identityAlignment
A3QJT4 50S ribosomal protein L341.2e-0973.33Show/hide
Query:  MPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        M KRTFQPS ++RKR+HGF AR AT GGRKVIARR AKGR+R++A
Subjt:  MPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

A8HAI3 50S ribosomal protein L341.2e-0973.33Show/hide
Query:  MPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        M KRTFQPS ++RKR+HGF AR AT GGRKVIARR AKGR+R++A
Subjt:  MPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

B0TQH4 50S ribosomal protein L341.2e-0973.33Show/hide
Query:  MPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        M KRTFQPS ++RKR+HGF AR AT GGRKVIARR AKGR+R++A
Subjt:  MPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

B8CH70 50S ribosomal protein L341.2e-0973.33Show/hide
Query:  MPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        M KRTFQPS ++RKR+HGF AR AT GGRKVIARR AKGR+R++A
Subjt:  MPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

Q8EKT3 50S ribosomal protein L341.5e-0971.11Show/hide
Query:  MPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        M KRTFQPS ++RKR+HGF AR AT GGRKV+ARR AKGR+R++A
Subjt:  MPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

Arabidopsis top hitse value%identityAlignment
AT3G13882.1 Ribosomal protein L349.0e-3455.03Show/hide
Query:  MASKLLLRTGNPLINRLRSSLTHQ--NHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDGDTSSSQE
        MA+K L+R+G  L+NR  +  T     + + +    +   G E  P  FPSLS  Q+    + ND  SL++L      +P GLPSL FFLP+ D SS  E
Subjt:  MASKLLLRTGNPLINRLRSSLTHQ--NHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDGDTSSSQE

Query:  PMLLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        P+LL PKRTFQPSTIRRKRNHGFFARKATKGGR+VIARRIAKGR R+TA
Subjt:  PMLLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

AT3G13882.2 Ribosomal protein L341.4e-2645.05Show/hide
Query:  NPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLP--------DGDTSS-------
        NP  N LRSS  +     + PQ      G E  P  FPSLS  Q+    + ND  SL++L      +P GLPSL FFLP        D   SS       
Subjt:  NPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLP--------DGDTSS-------

Query:  ------------------------------SQEPMLLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
                                      S EP+LL PKRTFQPSTIRRKRNHGFFARKATKGGR+VIARRIAKGR R+TA
Subjt:  ------------------------------SQEPMLLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAATGGAAGAACAAAGCCATTTCTGATCATCTCTCTAGGGTTTAGTGAGCTCGCTCATTCGAAAATGGCGTCCAAACTTCTGCTTCGAACGGGAAATCCTTTGAT
CAATCGTTTGCGATCAAGTTTAACGCATCAGAATCACAGGATTTTGAATCCCCAATCTCTGCTCCATGGCCATGGCGCTGAAGCCACTCCGATGCTATTTCCTTCACTCT
CTCAGCACCAGACTGGTCACCAATTGCAGATGAATGACGCCGAATCGTTGAGGAAGCTTCAATCGGAAGAAATCTTCTTCCCCTTTGGTCTTCCGTCGCTGCCGTTCTTC
TTGCCCGACGGAGACACTTCTTCGAGTCAAGAACCAATGCTGTTGATGCCTAAAAGGACTTTTCAACCTAGCACCATCAGGCGGAAGAGGAATCATGGATTCTTTGCCCG
CAAAGCAACCAAAGGTGGGCGGAAAGTTATTGCTAGAAGGATCGCGAAGGGCCGATCAAGAATAACCGCCTAA
mRNA sequenceShow/hide mRNA sequence
TGACAGTTCAAATTAAAAATGAAAAATGGAAGAACAAAGCCATTTCTGATCATCTCTCTAGGGTTTAGTGAGCTCGCTCATTCGAAAATGGCGTCCAAACTTCTGCTTCG
AACGGGAAATCCTTTGATCAATCGTTTGCGATCAAGTTTAACGCATCAGAATCACAGGATTTTGAATCCCCAATCTCTGCTCCATGGCCATGGCGCTGAAGCCACTCCGA
TGCTATTTCCTTCACTCTCTCAGCACCAGACTGGTCACCAATTGCAGATGAATGACGCCGAATCGTTGAGGAAGCTTCAATCGGAAGAAATCTTCTTCCCCTTTGGTCTT
CCGTCGCTGCCGTTCTTCTTGCCCGACGGAGACACTTCTTCGAGTCAAGAACCAATGCTGTTGATGCCTAAAAGGACTTTTCAACCTAGCACCATCAGGCGGAAGAGGAA
TCATGGATTCTTTGCCCGCAAAGCAACCAAAGGTGGGCGGAAAGTTATTGCTAGAAGGATCGCGAAGGGCCGATCAAGAATAACCGCCTAATGTGTATCGCAAAGTCAGG
TCTATATGAATTGCTCTGCCAATATCTTTTGTAGGCTATGTTAGGTTTTTCTATTAACTTGCTGAATAACCTCCTTAATTGTTAGTTTTCGTCTTAGACCTTCAATACAC
TGAGCGTAAACTTCTCTATTTTTAATGTTACCAGCCATTAAACCAGTTTCTGTTTCATATTGAAGTTTCTCTGTTTCAGTTTTATTTTAGTTCTTTGATAACTTGGCTAG
AAAACAGGGTAATTTAGTTATGTTCATGGTGGCTGTTGATGATGCTGAGCAAATGAACAGAAGTTATGCGAAAGGTGCAAAATGAACGAAGGTGGGTGAATTTAAGTCAT
TAGATAAGGC
Protein sequenceShow/hide protein sequence
MKNGRTKPFLIISLGFSELAHSKMASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFF
LPDGDTSSSQEPMLLMPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA