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Sed0001082 (gene) of Chayote v1 genome

Gene IDSed0001082
OrganismSechium edule (Chayote v1)
DescriptionTransducin/WD40 repeat-like superfamily protein
Genome locationLG14:21177619..21178229
RNA-Seq ExpressionSed0001082
SyntenySed0001082
Gene Ontology termsGO:0006952 - defense response (biological process)
GO:0006955 - immune response (biological process)
GO:0012501 - programmed cell death (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025678.1 Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa]2.7e-2160.36Show/hide
Query:  MTEKTRRTPRKAK-ATHLCFPQLRA-----AGKVPSPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRRR-----NTDHHHSEAVADCI
        M EK+RR PRK K   +LC  + R+       K PS  TL +RLREAVFRFIM+CALSKA   +HH  AG  F DD V RR     N DHHHSEAVADCI
Subjt:  MTEKTRRTPRKAK-ATHLCFPQLRA-----AGKVPSPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRRR-----NTDHHHSEAVADCI

Query:  EFIKTKAYSDD
        EFIK KAYSDD
Subjt:  EFIKTKAYSDD

KAG6603914.1 hypothetical protein SDJN03_04523, partial [Cucurbita argyrosperma subsp. sororia]1.2e-2459.2Show/hide
Query:  MTEKTRRTPRKAKATHLCFPQLRAAGKVPSPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRRR----NTDHHHSEAVADCIEFIKTKA
        M EKTRR P KAK   L    ++ + K P   TL +RLREAVFRFIM+CALSKA +HH    AG  F DD VRRR    N DHHHSEAVADCIEFIK KA
Subjt:  MTEKTRRTPRKAKATHLCFPQLRAAGKVPSPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRRR----NTDHHHSEAVADCIEFIKTKA

Query:  YSDDVTVHGGGSMDADADVAMPEPV
        YSDD  +   GS+DAD D+A+  P+
Subjt:  YSDDVTVHGGGSMDADADVAMPEPV

KGN49339.2 hypothetical protein Csa_003207 [Cucumis sativus]8.9e-2557.14Show/hide
Query:  MTEKTRRTPRKAK-ATHLCFPQLRAAG-----KVPSPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRRR-----NTDHHHSEAVADCI
        M EK+RR PRK K   +LC  + R+       K PSP TL +RLREAVFRFIM+CALSKA   +HH  AG  F DD V RR     N DHHHSEAVADCI
Subjt:  MTEKTRRTPRKAK-ATHLCFPQLRAAG-----KVPSPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRRR-----NTDHHHSEAVADCI

Query:  EFIKTKAYSDDVTVHGGGSM-DADADVAMPEPV
        EFIK KAYSDD  +   GS+ DAD D+ +  PV
Subjt:  EFIKTKAYSDDVTVHGGGSM-DADADVAMPEPV

MBA0860583.1 hypothetical protein [Gossypium schwendimanii]8.3e-1546.4Show/hide
Query:  MTEKTRRTPRKAKATHLCFPQLRAAGKVP---SPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRRRNTDHHHSEAVADCIEFIKTKAY
        M +KTR +P+  K++ LC P  ++  K+    SP TLL+R REAVFR IM+ ALSKA SHHHH       S    R    D HH+EAVADCIEFIK K+ 
Subjt:  MTEKTRRTPRKAKATHLCFPQLRAAGKVP---SPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRRRNTDHHHSEAVADCIEFIKTKAY

Query:  SDDVTVHGGGSMD-ADADVAMPEPV
         +        +MD A +++ MP PV
Subjt:  SDDVTVHGGGSMD-ADADVAMPEPV

XP_016699008.1 uncharacterized protein LOC107914579 [Gossypium hirsutum]6.4e-1545.9Show/hide
Query:  MTEKTRRTPRKAKATHLCFPQLRA--AGKVPSPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRR--RNTDHHHSEAVADCIEFIKTKA
        M  KTR TP++ K ++LC P+ +     K  SP  LLDR REAVFR IM+ AL+KA + H H       +  A RR  +  D HHSEAVADCIEFIK K+
Subjt:  MTEKTRRTPRKAKATHLCFPQLRA--AGKVPSPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRR--RNTDHHHSEAVADCIEFIKTKA

Query:  YSDDVTVHGGGSMDADADVAMP
          ++  V GG S  ++  +A+P
Subjt:  YSDDVTVHGGGSMDADADVAMP

TrEMBL top hitse value%identityAlignment
A0A0A0KGN3 Uncharacterized protein4.3e-2557.14Show/hide
Query:  MTEKTRRTPRKAK-ATHLCFPQLRAAG-----KVPSPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRRR-----NTDHHHSEAVADCI
        M EK+RR PRK K   +LC  + R+       K PSP TL +RLREAVFRFIM+CALSKA   +HH  AG  F DD V RR     N DHHHSEAVADCI
Subjt:  MTEKTRRTPRKAK-ATHLCFPQLRAAG-----KVPSPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRRR-----NTDHHHSEAVADCI

Query:  EFIKTKAYSDDVTVHGGGSM-DADADVAMPEPV
        EFIK KAYSDD  +   GS+ DAD D+ +  PV
Subjt:  EFIKTKAYSDDVTVHGGGSM-DADADVAMPEPV

A0A1U8KDI1 uncharacterized protein LOC1079145793.1e-1545.9Show/hide
Query:  MTEKTRRTPRKAKATHLCFPQLRA--AGKVPSPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRR--RNTDHHHSEAVADCIEFIKTKA
        M  KTR TP++ K ++LC P+ +     K  SP  LLDR REAVFR IM+ AL+KA + H H       +  A RR  +  D HHSEAVADCIEFIK K+
Subjt:  MTEKTRRTPRKAKATHLCFPQLRA--AGKVPSPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRR--RNTDHHHSEAVADCIEFIKTKA

Query:  YSDDVTVHGGGSMDADADVAMP
          ++  V GG S  ++  +A+P
Subjt:  YSDDVTVHGGGSMDADADVAMP

A0A5A7SHP0 Transducin/WD40 repeat-like superfamily protein1.3e-2160.36Show/hide
Query:  MTEKTRRTPRKAK-ATHLCFPQLRA-----AGKVPSPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRRR-----NTDHHHSEAVADCI
        M EK+RR PRK K   +LC  + R+       K PS  TL +RLREAVFRFIM+CALSKA   +HH  AG  F DD V RR     N DHHHSEAVADCI
Subjt:  MTEKTRRTPRKAK-ATHLCFPQLRA-----AGKVPSPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRRR-----NTDHHHSEAVADCI

Query:  EFIKTKAYSDD
        EFIK KAYSDD
Subjt:  EFIKTKAYSDD

A0A5C7HUV3 Uncharacterized protein4.0e-1546.92Show/hide
Query:  EKTRRTPRKAKATHLCFPQLRAAG-------KVPSPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRRRNTDHHHSEAVADCIEFIKTK
        EK R +PRK K T+LC P+L  AG       K  +P TLL+R REAVFR IM+ ALSKA + HHH   G      +      D HHSEAVADCIEFIK K
Subjt:  EKTRRTPRKAKATHLCFPQLRAAG-------KVPSPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRRRNTDHHHSEAVADCIEFIKTK

Query:  AYSDD----VTVHGGGSMDADADVAMPEPV
        A +DD           S+D   ++ +P PV
Subjt:  AYSDD----VTVHGGGSMDADADVAMPEPV

A0A6J0ZL23 LOW QUALITY PROTEIN: uncharacterized protein LOC1104097884.0e-1546.77Show/hide
Query:  MTEKTRRTPRKAKATHLCFPQLRAAGKVP--SPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRRRNTDHHHSEAVADCIEFIKTKA--
        M +KTR  P+K K++ LC P+ + + K    SP TLL+R+REAVFR IM+ AL+K  SHHH      G S    +    D HHSEAVADCIEFIK KA  
Subjt:  MTEKTRRTPRKAKATHLCFPQLRAAGKVP--SPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRRRNTDHHHSEAVADCIEFIKTKA--

Query:  YSDDVTVHGGGSMDADADVAMPEP
          +  +     +MDA  +V MP P
Subjt:  YSDDVTVHGGGSMDADADVAMPEP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGAAAAAACCAGAAGAACCCCCAGAAAGGCAAAGGCCACTCATCTCTGCTTCCCACAGCTCAGAGCCGCCGGCAAGGTCCCGTCGCCGGCGACTCTTCTCGACCG
CCTCCGCGAGGCCGTTTTTCGGTTCATCATGATATGCGCTCTCTCCAAAGCCCCAAGTCACCATCATCACGATGGCGCCGGAGATGGTTTCTCCGACGACGCCGTTAGGC
GGCGAAACACTGACCACCACCACAGCGAAGCCGTCGCCGATTGCATTGAGTTCATTAAGACGAAGGCGTACTCGGACGACGTGACAGTTCACGGCGGCGGATCGATGGAC
GCCGATGCTGACGTGGCCATGCCGGAGCCGGTGTCTGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATTCATTAATTCAAACCAAATGACAGAAAAAACCAGAAGAACCCCCAGAAAGGCAAAGGCCACTCATCTCTGCTTCCCACAGCTCAGAGCCGCCGGCAAGGTCCCGTCGC
CGGCGACTCTTCTCGACCGCCTCCGCGAGGCCGTTTTTCGGTTCATCATGATATGCGCTCTCTCCAAAGCCCCAAGTCACCATCATCACGATGGCGCCGGAGATGGTTTC
TCCGACGACGCCGTTAGGCGGCGAAACACTGACCACCACCACAGCGAAGCCGTCGCCGATTGCATTGAGTTCATTAAGACGAAGGCGTACTCGGACGACGTGACAGTTCA
CGGCGGCGGATCGATGGACGCCGATGCTGACGTGGCCATGCCGGAGCCGGTGTCTGGTTAACTAACGGCGGTGCAAGGGGGTCTAGACTAGTTGCTCCTCCAATTTGTGT
TGAAATTAGTGTTTAGTTTTAGGATTTTTATAAATTAATTATGGGAAAGAAATTCGGAAATTCTACGTGGAAATGTGCCGATTTCGTTATATATATGTGGGGTATTTCCT
TTTGTTATTTTAGATTGTCTCCTACTATCTAATTATCAAGTGTTATTGGGTCATATAATAG
Protein sequenceShow/hide protein sequence
MTEKTRRTPRKAKATHLCFPQLRAAGKVPSPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRRRNTDHHHSEAVADCIEFIKTKAYSDDVTVHGGGSMD
ADADVAMPEPVSG