CuGenDBv2

Gene ID	Sed0001088
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L20, chloroplastic
Genome location	Contig00297:126162..126509
RNA-Seq Expression	Sed0001088
Synteny	Sed0001088
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR005813 - Ribosomal protein L20 IPR035566 - Ribosomal protein L20, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

YP_009447473.1 ribosomal protein L20 [Cucurbita maxima]

7.4e-50

96.58

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWI RINAVIRYNKVDYSYSRFI   YKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

YP_009560858.1 ribosomal protein L20 [Trichosanthes kirilowii]

2.0e-50

97.44

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFI   YKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

YP_009751676.1 ribosomal protein L20 [Hodgsonia heteroclita]

9.7e-50

96.58

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKI LFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFI   YKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

YP_009752266.1 ribosomal protein L20 [Trichosanthes baviensis]

2.6e-50

96.58

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNK+DYSYSRFI   YKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

YP_009752604.1 ribosomal protein L20 [Trichosanthes homophylla]

7.4e-50

95.73

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNK+DYSYSRFI   YKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
         ILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

TrEMBL top hits

e value

%identity

Alignment

A0A410HFA7 50S ribosomal protein L20, chloroplastic

9.5e-51

97.44

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFI   YKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

A0A6H0EQN9 50S ribosomal protein L20, chloroplastic

9.5e-51

97.44

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFI   YKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

A0A6H0ERB9 50S ribosomal protein L20, chloroplastic

9.5e-51

97.44

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFI   YKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

A0A6H0ES10 50S ribosomal protein L20, chloroplastic

9.5e-51

97.44

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFI   YKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

A0A6H0ESL1 50S ribosomal protein L20, chloroplastic

9.5e-51

97.44

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFI   YKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

SwissProt top hits

e value

%identity

Alignment

B1NWH3 50S ribosomal protein L20, chloroplastic

1.5e-45

85.47

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI
        MTRI+RGYIARRRRTKIRLFASSFRGAHSRLTRTI QQKIRAL SA+RDR RQKRNFR+LW+TRINAVIR + V YSYSR I   YKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISN+I+K
Subjt:  AILNRNCLYMISNEIIK

Q09G23 50S ribosomal protein L20, chloroplastic

4.7e-47

88.03

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI
        MTRI+RGYIARRRRTKIRLFAS+FRGAHSRLTRT TQQK+RAL SA+RDRGRQKRNFR+LWITRINAVIR NKV YSYSR I   YKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AI NRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

Q09WZ4 50S ribosomal protein L20, chloroplastic

1.2e-45

87.18

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSF+GA SRLTRTITQQKIRAL SA++DRGRQKR+FR+LWITRINAVIR NKV YSYS  I   YKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEI+K
Subjt:  AILNRNCLYMISNEIIK

Q4VZJ4 50S ribosomal protein L20, chloroplastic

4.1e-51

94.87

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWI RINAVIR N VDYSYSRFI   YKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

Q7FNS5 50S ribosomal protein L20, chloroplastic

2.6e-45

87.18

Show/hide

Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+LWITRINAVIR   V YSYSR I   YKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AI NRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

Arabidopsis top hits

e value

%identity

Alignment

AT1G16740.1 Ribosomal protein L20

3.2e-06

35.63

Show/hide

Query:  RTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQYKRQLLLNRKILAQIAI
        + +I   A  FRG      R   ++  +AL  +YRDR  +KR  R LWI RINA  R + V+Y        K  + LNRK+L+++++
Subjt:  RTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQYKRQLLLNRKILAQIAI

ATCG00660.1 ribosomal protein L20

2.7e-42

78.63

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI
        MTRIKRGYIARRRRTK+RLFASSFRGAHSRLTRT+TQQ+IRAL SA+RDRG++KR+FR+LWITRINAVI    V YSY+ FI   YK+QLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        A+LNR+CLY ISN+I K
Subjt:  AILNRNCLYMISNEIIK

Sequences

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CDS sequence

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ATGACTAGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCACGACTTACTCGAACTATTACTCA
ACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCACTCGAATAAATGCAGTAATTCGATATAATAAGG
TAGACTACAGTTATAGTAGATTCATACAGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCTATATTAAATAGGAATTGTCTTTATATGATTTCC
AATGAGATCATAAAATAA

mRNA sequence

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Protein sequence

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MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQYKRQLLLNRKILAQIAILNRNCLYMIS
NEIIK

Sed0001088 (gene) of Chayote v1 genome