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Sed0001116 (gene) of Chayote v1 genome

Gene IDSed0001116
OrganismSechium edule (Chayote v1)
DescriptionGibberellin regulated protein
Genome locationLG03:5503219..5504432
RNA-Seq ExpressionSed0001116
SyntenySed0001116
Gene Ontology termsNA
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008460555.1 PREDICTED: protein RSI-1-like [Cucumis melo]1.6e-3480.22Show/hide
Query:  YISFFILFSVLFFLTFS-LHLAE-VLVLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
        + SFF LFS+LF LT S LH AE    L  +DCKP+CSYRCSATSHRKPCMFFCQ CCAKCLCVPPGTYGNKQ CPCYNNWKTQQGGPKCP
Subjt:  YISFFILFSVLFFLTFS-LHLAE-VLVLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP

XP_011656217.1 protein RSI-1-like [Cucumis sativus]4.7e-3479.38Show/hide
Query:  MAASRPYISFFILFSVLFFLTFS-LHLAE-VLVLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
        MA+S  Y SFF LFS+LF LT S LHLAE  L L  +DCKP+CSYRCSAT+HRKPCMFFCQ CCAKCLCVP GTYGNKQ CPCYNNWKTQQGGPKCP
Subjt:  MAASRPYISFFILFSVLFFLTFS-LHLAE-VLVLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP

XP_022141399.1 protein RSI-1-like [Momordica charantia]4.9e-3983.33Show/hide
Query:  MAASRPYISFFILFSVLFFLTFSLHLAEVLVLMG-TDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
        MA  RPYISFFI    LFFLT SLHLAE     G +DCKPRCSYRCSATSH+KPCMFFCQ CCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
Subjt:  MAASRPYISFFILFSVLFFLTFSLHLAEVLVLMG-TDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP

XP_023916009.1 protein RSI-1-like [Quercus suber]4.7e-3472.04Show/hide
Query:  ASRPYISFFILFSVLFFLTFSLHLAEVLVLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
        A RPY SF +L S+L  +TFS  +AE   L  +DCKP+C+YRCSATSH+KPCMFFC  CC+KCLCVPPGTYGNKQVCPCYNNWKT++GGPKCP
Subjt:  ASRPYISFFILFSVLFFLTFSLHLAEVLVLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP

XP_038876048.1 protein RSI-1-like [Benincasa hispida]1.6e-3781.63Show/hide
Query:  MAASRPYI--SFFILFSVLFFLTFSLHLAEVLV-LMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
        MA+SRPYI  SFFI    LFFLT SLHLAE    L  +DCKP+C+YRCSATSHRKPCMFFCQ CCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
Subjt:  MAASRPYI--SFFILFSVLFFLTFSLHLAEVLV-LMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP

TrEMBL top hitse value%identityAlignment
A0A1S3CD72 protein RSI-1-like7.9e-3580.22Show/hide
Query:  YISFFILFSVLFFLTFS-LHLAE-VLVLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
        + SFF LFS+LF LT S LH AE    L  +DCKP+CSYRCSATSHRKPCMFFCQ CCAKCLCVPPGTYGNKQ CPCYNNWKTQQGGPKCP
Subjt:  YISFFILFSVLFFLTFS-LHLAE-VLVLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP

A0A2N9FAY6 Uncharacterized protein2.7e-3573.68Show/hide
Query:  ASRPYISFFILFSVLFFLTFSLHLAEV--LVLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
        A RPY SFF+LFS+L  +TFS H+AEV    L  +DCKP+C+YRCSATSH+KPCMFFC  CC+KCLCVPPGTYGNKQVCPCYNNWKT++G PKCP
Subjt:  ASRPYISFFILFSVLFFLTFSLHLAEV--LVLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP

A0A2P5B1Z1 Gibberellin regulated protein3.9e-3471.43Show/hide
Query:  MAASRPYISFFILFSVLFFLTFSLHLAEVL---VLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
        MAA+RPY S  +L S+LF +TFS ++AE      L  +DCKP+C+YRCSATSH+KPCMFFCQ CCA CLCVPPGTYGNKQVCPCYNNWKT++GGPKCP
Subjt:  MAASRPYISFFILFSVLFFLTFSLHLAEVL---VLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP

A0A2P5EU29 Gibberellin regulated protein3.9e-3471.43Show/hide
Query:  MAASRPYISFFILFSVLFFLTFSLHLAEVL---VLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
        MAA+RPY S  +L S+LF +TFS ++AE      L  +DCKP+C+YRCSATSH+KPCMFFCQ CCA CLCVPPGTYGNKQVCPCYNNWKT++GGPKCP
Subjt:  MAASRPYISFFILFSVLFFLTFSLHLAEVL---VLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP

A0A6J1CII9 protein RSI-1-like2.4e-3983.33Show/hide
Query:  MAASRPYISFFILFSVLFFLTFSLHLAEVLVLMG-TDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
        MA  RPYISFFI    LFFLT SLHLAE     G +DCKPRCSYRCSATSH+KPCMFFCQ CCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
Subjt:  MAASRPYISFFILFSVLFFLTFSLHLAEVLVLMG-TDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP

SwissProt top hitse value%identityAlignment
A8MR46 Gibberellin-regulated protein 131.3e-2676.67Show/hide
Query:  DCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
        +C PRC  RCS T ++KPC+FFC  CC KCLCVPPGTYGNKQVCPCYNNWKT+ GGPKCP
Subjt:  DCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP

P27057 Protein GAST14.8e-2981.67Show/hide
Query:  DCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
        DC+P+C+YRCS TS++KPCMFFCQ CCAKCLCVP GTYGNKQ CPCYNNWKT++GGPKCP
Subjt:  DCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP

P47926 Protein RSI-13.0e-3167.71Show/hide
Query:  MAASRPYISFFILFSV-LFFLTFSLHLAEVLVLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
        MA S    SF +L S+ L  LTFS  +     L  TDCKPRC+YRCSATSH+KPCMFFCQ CCA CLCVP G YGNKQ CPCYNNWKTQ+G PKCP
Subjt:  MAASRPYISFFILFSV-LFFLTFSLHLAEVLVLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP

Q6NMQ7 Gibberellin-regulated protein 61.2e-2778.12Show/hide
Query:  LMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
        L    C  +C+ RCS T + KPCMFFCQ CCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
Subjt:  LMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP

Q84J95 Gibberellin-regulated protein 59.9e-2760Show/hide
Query:  SVLFFLT--FSLHLAEVL-------VLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
        + LFFLT  F L ++ ++        L    C  +CS+RCSATSH+KPCMFFC  CC KCLCVPPGT+GNKQ CPCYNNWKT++G PKCP
Subjt:  SVLFFLT--FSLHLAEVL-------VLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP

Arabidopsis top hitse value%identityAlignment
AT1G74670.1 Gibberellin-regulated family protein8.3e-2978.12Show/hide
Query:  LMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
        L    C  +C+ RCS T + KPCMFFCQ CCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
Subjt:  LMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP

AT2G30810.1 Gibberellin-regulated family protein1.3e-2673.33Show/hide
Query:  DCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
        +C   C YRCSATSHRKPC+FFC  CC KCLCVP GTYG+K+ CPCYNNW T++GGPKCP
Subjt:  DCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP

AT3G02885.1 GAST1 protein homolog 57.1e-2860Show/hide
Query:  SVLFFLT--FSLHLAEVL-------VLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
        + LFFLT  F L ++ ++        L    C  +CS+RCSATSH+KPCMFFC  CC KCLCVPPGT+GNKQ CPCYNNWKT++G PKCP
Subjt:  SVLFFLT--FSLHLAEVL-------VLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP

AT3G10185.1 Gibberellin-regulated family protein9.2e-2876.67Show/hide
Query:  DCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
        +C PRC  RCS T ++KPC+FFC  CC KCLCVPPGTYGNKQVCPCYNNWKT+ GGPKCP
Subjt:  DCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP

AT5G15230.1 GAST1 protein homolog 41.8e-2365.62Show/hide
Query:  LMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
        L  T C   C  RC  T + K C+ FC  CC KCLCVPPG YGNKQVC CYNNWKTQ+GGPKCP
Subjt:  LMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCCAGTCGTCCGTACATCTCCTTCTTCATTCTCTTTTCTGTGCTCTTTTTCCTCACTTTCTCTCTGCATTTAGCTGAGGTATTGGTATTGATGGGAACAGATTG
CAAGCCAAGGTGCAGTTATCGATGCTCGGCGACATCGCACAGGAAACCGTGCATGTTCTTCTGCCAAAACTGCTGTGCAAAATGCCTGTGTGTGCCTCCAGGCACCTATG
GCAACAAGCAAGTTTGTCCATGCTACAATAACTGGAAGACTCAGCAAGGAGGCCCCAAATGCCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCCAGTCGTCCGTACATCTCCTTCTTCATTCTCTTTTCTGTGCTCTTTTTCCTCACTTTCTCTCTGCATTTAGCTGAGGTATTGGTATTGATGGGAACAGATTG
CAAGCCAAGGTGCAGTTATCGATGCTCGGCGACATCGCACAGGAAACCGTGCATGTTCTTCTGCCAAAACTGCTGTGCAAAATGCCTGTGTGTGCCTCCAGGCACCTATG
GCAACAAGCAAGTTTGTCCATGCTACAATAACTGGAAGACTCAGCAAGGAGGCCCCAAATGCCCTTGA
Protein sequenceShow/hide protein sequence
MAASRPYISFFILFSVLFFLTFSLHLAEVLVLMGTDCKPRCSYRCSATSHRKPCMFFCQNCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP