CuGenDBv2

Gene ID	Sed0001121
Organism	Sechium edule (Chayote v1)
Description	Small nuclear ribonucleoprotein Sm D1
Genome location	LG08:36228750..36231175
RNA-Seq Expression	Sed0001121
Synteny	Sed0001121
Gene Ontology terms	GO:0000387 - spliceosomal snRNP assembly (biological process) GO:0034715 - pICln-Sm protein complex (cellular component) GO:0097526 - spliceosomal tri-snRNP complex (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0034719 - SMN-Sm protein complex (cellular component) GO:0000243 - commitment complex (cellular component) GO:0005689 - U12-type spliceosomal complex (cellular component) GO:0005687 - U4 snRNP (cellular component) GO:0005686 - U2 snRNP (cellular component) GO:0005685 - U1 snRNP (cellular component) GO:0005682 - U5 snRNP (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR001163 - LSM domain, eukaryotic/archaea-type IPR010920 - LSM domain superfamily IPR027141 - Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3 IPR034102 - Small nuclear ribonucleoprotein D1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004150106.1 small nuclear ribonucleoprotein SmD1b [Cucumis sativus]

2.1e-35

93.33

Show/hide

Query:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR
        +HG   GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR +GRGRGRGRGRGRGRGR
Subjt:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR

XP_022963993.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata]

2.1e-35

93.33

Show/hide

Query:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR
        +HG   GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG+ MGRGRGRGRGRGRGRGR
Subjt:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR

XP_038681834.1 small nuclear ribonucleoprotein SmD1a-like [Tripterygium wilfordii]

1.2e-35

93.33

Show/hide

Query:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR
        +HG   GVDISMNTHLK+VKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR
Subjt:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR

XP_038896756.1 small nuclear ribonucleoprotein SmD1b isoform X2 [Benincasa hispida]

2.1e-35

93.33

Show/hide

Query:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR
        +HG   GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR +GRGRGRGRGRGRGRGR
Subjt:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR

XP_042007162.1 small nuclear ribonucleoprotein SmD1a [Salvia splendens]

1.2e-35

93.33

Show/hide

Query:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR
        +HG   GVDISMNTHLK VKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRA+GRGRGRGRGRGRGRGR
Subjt:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LD16 Small nuclear ribonucleoprotein Sm D1

1.0e-35

93.33

Show/hide

Query:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR
        +HG   GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR +GRGRGRGRGRGRGRGR
Subjt:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR

A0A4D8Z091 Small nuclear ribonucleoprotein Sm D1

7.8e-36

93.33

Show/hide

Query:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR
        +HG   GVDISMNTHLK VKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRA+GRGRGRGRGRGRGRGR
Subjt:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR

A0A6J1DVC4 Small nuclear ribonucleoprotein Sm D1

1.0e-35

93.33

Show/hide

Query:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR
        +HG   GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR +GRGRGRGRGRGRGRGR
Subjt:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR

A0A6J1HJI3 Small nuclear ribonucleoprotein Sm D1

1.0e-35

93.33

Show/hide

Query:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR
        +HG   GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG+ MGRGRGRGRGRGRGRGR
Subjt:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR

A0A7J7CG15 Small nuclear ribonucleoprotein Sm D1

6.0e-36

93.33

Show/hide

Query:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR
        +HG   GVDISMNTHLK+VKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR
Subjt:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR

SwissProt top hits

e value

%identity

Alignment

P62314 Small nuclear ribonucleoprotein Sm D1

7.8e-25

68.89

Show/hide

Query:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR
        +HG   GVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Subjt:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR

Q3ZC10 Small nuclear ribonucleoprotein Sm D1

7.8e-25

68.89

Show/hide

Query:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR
        +HG   GVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Subjt:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR

Q4R5F6 Small nuclear ribonucleoprotein Sm D1

7.8e-25

68.89

Show/hide

Query:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR
        +HG   GVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Subjt:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR

Q9SSF1 Small nuclear ribonucleoprotein SmD1a

1.7e-35

84.44

Show/hide

Query:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR
        +HG   GVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG+A+GRGRGRGRGRGRGRGR
Subjt:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR

Q9SY09 Small nuclear ribonucleoprotein SmD1b

8.3e-35

86.67

Show/hide

Query:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-AMGRGRGRGRGRGRGRG
        +HG   GVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG+   GRGRGRGRGRGRGRG
Subjt:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-AMGRGRGRGRGRGRGRG

Arabidopsis top hits

e value

%identity

Alignment

AT3G07590.1 Small nuclear ribonucleoprotein family protein

1.2e-36

84.44

Show/hide

Query:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR
        +HG   GVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG+A+GRGRGRGRGRGRGRGR
Subjt:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR

AT3G07590.2 Small nuclear ribonucleoprotein family protein

1.2e-36

84.44

Show/hide

Query:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR
        +HG   GVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG+A+GRGRGRGRGRGRGRGR
Subjt:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR

AT4G02840.1 Small nuclear ribonucleoprotein family protein

5.9e-36

86.67

Show/hide

Query:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-AMGRGRGRGRGRGRGRG
        +HG   GVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG+   GRGRGRGRGRGRGRG
Subjt:  IHG--FGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-AMGRGRGRGRGRGRGRG

AT4G02840.2 Small nuclear ribonucleoprotein family protein

7.7e-36

90.48

Show/hide

Query:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-AMGRGRGRGRGRGRGRG
        GVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG+   GRGRGRGRGRGRGRG
Subjt:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-AMGRGRGRGRGRGRGRG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGACCGTCTCAATCGAGCTCAAAAATGGAACCGTTGTCCATGGCACCATCACAGGCTGATCAAACAAGACCGAGAGACTTGTATGCAAATCTAAGTTGCGATCTACA
TGTTGCTTCTGTTTTCTACAAATTACTTCTAAACATACATGGTTTTGGTGTGGACATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTGAAGGGGAAAAATC
CAGTTACCATGGATCATTTAAGTGTGAGGGGCAACAACATCAGATATTATATTCTACCTGACAGCTTGAATCTTGAGACTTTACTAGTTGAAGAGACACCCAGGGTCAAG
CCCAAGAAACCAACTGCAGGGAGGGCAATGGGGCGTGGGCGTGGACGAGGCCGTGGCCGTGGTCGTGGGCGTGGACGCTAG

mRNA sequence

Show/hide mRNA sequence

TGAAATTGAAGCAAAAATCGCGCGACTCTCTGGAATTGCAGCAGCGCGGAAGATCCTTCCAACTTTGAGTAAACTTGGAATTTCTTCATTTTGAGCCATGAAGCTTGTTA
GGTTTTTGATGAAGCTCAACAATGAGACCGTCTCAATCGAGCTCAAAAATGGAACCGTTGTCCATGGCACCATCACAGGCTGATCAAACAAGACCGAGAGACTTGTATGC
AAATCTAAGTTGCGATCTACATGTTGCTTCTGTTTTCTACAAATTACTTCTAAACATACATGGTTTTGGTGTGGACATCAGCATGAATACACATTTGAAGGCTGTGAAGC
TTACTCTGAAGGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGGGGCAACAACATCAGATATTATATTCTACCTGACAGCTTGAATCTTGAGACTTTACTAGTT
GAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGGAGGGCAATGGGGCGTGGGCGTGGACGAGGCCGTGGCCGTGGTCGTGGGCGTGGACGCTAGATTTGTCG
CTGTTTCAATTTTTGAGCCCCATAGTGAAAACTCTTGGTATCGTAGAGAAGGGTTACGGATTTAGTGACGTCAAGAAGTGGTATAGCAATTCACAGTTCAGTCTCATATG
TTTATTACGATGCTGTCTACTTGTTTTTCTAATGATTGTTGTAACTTTGCTGCTATATTTTCTGGTGGATGGGAACTGCCCGGCATGTAAATGATTTACTCTCTTAATAG
CACCCCAATCAATGACTGAACTTTTCCATGTTATTAGAGTTTAGACTGATATCGTGTTCTCTTACTTGTACTTTGAGTGTGGTTTCATCTTGTTTCATAGGATCTACTAT
TTTGAAACTGACGGATGTAGTGAGACTTTGTGGCAAACTTTGCTTCTCTAGAACCCTTTCTTTGCAGCAACTCGGACAAGCAATTCACCTTGAGGAGGTATTAAAGCCTC
TGTACTCCGAATCTTACTCAGCTTCGAGGGCGAGCTTTGGACCGGGCTGCCATTTCTTAAACTTCCCGTCCTCAAAGTTGATCCAGGTGCACTAGCATTAGTGAACGTAC

Protein sequence

Show/hide protein sequence

MRPSQSSSKMEPLSMAPSQADQTRPRDLYANLSCDLHVASVFYKLLLNIHGFGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVK
PKKPTAGRAMGRGRGRGRGRGRGRGR

Sed0001121 (gene) of Chayote v1 genome