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Sed0001163 (gene) of Chayote v1 genome

Gene IDSed0001163
OrganismSechium edule (Chayote v1)
DescriptionB3 domain-containing protein
Genome locationLG14:6910204..6910818
RNA-Seq ExpressionSed0001163
SyntenySed0001163
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR005508 - B3 domain-containing protein At2g31720-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG4110545.1 hypothetical protein ERO13_D13G055275v2 [Gossypium hirsutum]7.3e-0828Show/hide
Query:  EAGMILKSNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFLREEEEEDLKSGKVMAVTVIEP--NGEAVSSLKLRLRGP-SYV
        E G+   SN P  F   ++D      +++++K L   ++    NR  I  +  K  FL E+EE  L + + MAV  +EP  +   V+  K  +    SY+
Subjt:  EAGMILKSNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFLREEEEEDLKSGKVMAVTVIEP--NGEAVSSLKLRLRGP-SYV

Query:  LHGAWKYVVARNRHAIKRGRVLRIWYFRVDGGLWFALEVEKSEEEKNREI
        ++G +  V+  NR ++K   V++IW FRV   L     + K  + +N ++
Subjt:  LHGAWKYVVARNRHAIKRGRVLRIWYFRVDGGLWFALEVEKSEEEKNREI

KJB79698.1 hypothetical protein B456_013G062600 [Gossypium raimondii]3.3e-0828.67Show/hide
Query:  SNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFLREEEEEDLKSGKVMAVTVIEP--NGEAVSSLKLRLRGP-SYVLHGAWKY
        S+ P  F   ++D      +++++K L   ++    NRF I  +  K  FL E+EE  L + + MAV  +EP  +   V+  K  +    SY+++G +  
Subjt:  SNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFLREEEEEDLKSGKVMAVTVIEP--NGEAVSSLKLRLRGP-SYVLHGAWKY

Query:  VVARNRHAIKRGRVLRIWYFRVDGGLWFALEVEKSEEEKNREI
        V+  NR ++K   V++IW FRV   L     + K  +E+N ++
Subjt:  VVARNRHAIKRGRVLRIWYFRVDGGLWFALEVEKSEEEKNREI

TYG36433.1 hypothetical protein ES288_D13G065400v1 [Gossypium darwinii]1.6e-0727.56Show/hide
Query:  KEETEAGMILKSNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFLREEEEEDLKSGKVMAVTVIEPN-GEAVSSLKLRL----
        K+  E G+   SN P  F   ++D      +++++K L   ++    NR  I  +  K  FL E+EE  L + + MAV  +EP    +VS++ L      
Subjt:  KEETEAGMILKSNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFLREEEEEDLKSGKVMAVTVIEPN-GEAVSSLKLRL----

Query:  RGPSYVLHGAWKYVVARNRHAIKRGRVLRIWYFRVDGGLWFALEVEKSEEEKNREI
           SY+++G +  V+  NR ++K   V++IW FR    L     + K  + +N ++
Subjt:  RGPSYVLHGAWKYVVARNRHAIKRGRVLRIWYFRVDGGLWFALEVEKSEEEKNREI

TYH33505.1 hypothetical protein ES332_D13G064600v1 [Gossypium tomentosum]2.5e-0828.67Show/hide
Query:  EAGMILKSNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFLREEEEEDLKSGKVMAVTVIEP--NGEAVSSLKLRLRGP-SYV
        E G+   SN P  F   ++D      +++++K L   ++    NR  I  +  K  FL E+EE  L + + MAV  +EP  +   V+  K  +    SY+
Subjt:  EAGMILKSNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFLREEEEEDLKSGKVMAVTVIEP--NGEAVSSLKLRLRGP-SYV

Query:  LHGAWKYVVARNRHAIKRGRVLRIWYFRVDGGLWFALEVEKSEEEKNREI
        ++G +  V+  NR ++K   V++IW FRV   L     + K  + KN ++
Subjt:  LHGAWKYVVARNRHAIKRGRVLRIWYFRVDGGLWFALEVEKSEEEKNREI

XP_022156187.1 VID27-like protein [Momordica charantia]2.4e-2740Show/hide
Query:  NVNTSDSASPAAVESTGGDVKSSAVQVQESSESGGKE---ETEAGMILKSNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFL
        +V+  ++    +  S      + A   Q+SSES G+E   E++       NFP  FT+ + DP SIRPR+LMEK+L   +V  N NR  I A+  KE FL
Subjt:  NVNTSDSASPAAVESTGGDVKSSAVQVQESSESGGKE---ETEAGMILKSNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFL

Query:  REEEEEDLKSGKVMAVTVIEPNGEAVSSLKLRLR------GPSYVLHGAWKYVVARNRHAIKRGRVLRIWYFRVDGG-----LWFALEVEKSEEEKNREI
          +EE+ + +G+ M V VIEP+   VS++ LR R       PSYVL G W  VVARN  A+KRGR +R+WYF    G     L FA+EV +S +  + E 
Subjt:  REEEEEDLKSGKVMAVTVIEPNGEAVSSLKLRLR------GPSYVLHGAWKYVVARNRHAIKRGRVLRIWYFRVDGG-----LWFALEVEKSEEEKNREI

Query:  AKRNLEIWYKQNVFS
         K   + W+ QN+F+
Subjt:  AKRNLEIWYKQNVFS

TrEMBL top hitse value%identityAlignment
A0A0D2TW38 Uncharacterized protein1.6e-0828.67Show/hide
Query:  SNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFLREEEEEDLKSGKVMAVTVIEP--NGEAVSSLKLRLRGP-SYVLHGAWKY
        S+ P  F   ++D      +++++K L   ++    NRF I  +  K  FL E+EE  L + + MAV  +EP  +   V+  K  +    SY+++G +  
Subjt:  SNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFLREEEEEDLKSGKVMAVTVIEP--NGEAVSSLKLRLRGP-SYVLHGAWKY

Query:  VVARNRHAIKRGRVLRIWYFRVDGGLWFALEVEKSEEEKNREI
        V+  NR ++K   V++IW FRV   L     + K  +E+N ++
Subjt:  VVARNRHAIKRGRVLRIWYFRVDGGLWFALEVEKSEEEKNREI

A0A5D1ZVR2 Uncharacterized protein7.9e-0827.56Show/hide
Query:  KEETEAGMILKSNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFLREEEEEDLKSGKVMAVTVIEPN-GEAVSSLKLRL----
        K+  E G+   SN P  F   ++D      +++++K L   ++    NR  I  +  K  FL E+EE  L + + MAV  +EP    +VS++ L      
Subjt:  KEETEAGMILKSNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFLREEEEEDLKSGKVMAVTVIEPN-GEAVSSLKLRL----

Query:  RGPSYVLHGAWKYVVARNRHAIKRGRVLRIWYFRVDGGLWFALEVEKSEEEKNREI
           SY+++G +  V+  NR ++K   V++IW FR    L     + K  + +N ++
Subjt:  RGPSYVLHGAWKYVVARNRHAIKRGRVLRIWYFRVDGGLWFALEVEKSEEEKNREI

A0A5D2HTB8 Uncharacterized protein1.2e-0828.67Show/hide
Query:  EAGMILKSNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFLREEEEEDLKSGKVMAVTVIEP--NGEAVSSLKLRLRGP-SYV
        E G+   SN P  F   ++D      +++++K L   ++    NR  I  +  K  FL E+EE  L + + MAV  +EP  +   V+  K  +    SY+
Subjt:  EAGMILKSNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFLREEEEEDLKSGKVMAVTVIEP--NGEAVSSLKLRLRGP-SYV

Query:  LHGAWKYVVARNRHAIKRGRVLRIWYFRVDGGLWFALEVEKSEEEKNREI
        ++G +  V+  NR ++K   V++IW FRV   L     + K  + KN ++
Subjt:  LHGAWKYVVARNRHAIKRGRVLRIWYFRVDGGLWFALEVEKSEEEKNREI

A0A5D2S2D8 Uncharacterized protein7.9e-0827.33Show/hide
Query:  EAGMILKSNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFLREEEEEDLKSGKVMAVTVIEP--NGEAVSSLKLRLRGP-SYV
        E G+   SN P  F   ++D      +++++K L   ++    NR  I  +  K  FL E+EE  L + + MA+  +EP  +   V+  K  +    SY+
Subjt:  EAGMILKSNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFLREEEEEDLKSGKVMAVTVIEP--NGEAVSSLKLRLRGP-SYV

Query:  LHGAWKYVVARNRHAIKRGRVLRIWYFRVDGGLWFALEVEKSEEEKNREI
        ++G +  V+  NR ++K   V++IW FRV   L     + K  + +N ++
Subjt:  LHGAWKYVVARNRHAIKRGRVLRIWYFRVDGGLWFALEVEKSEEEKNREI

A0A6J1DRC9 VID27-like protein1.2e-2740Show/hide
Query:  NVNTSDSASPAAVESTGGDVKSSAVQVQESSESGGKE---ETEAGMILKSNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFL
        +V+  ++    +  S      + A   Q+SSES G+E   E++       NFP  FT+ + DP SIRPR+LMEK+L   +V  N NR  I A+  KE FL
Subjt:  NVNTSDSASPAAVESTGGDVKSSAVQVQESSESGGKE---ETEAGMILKSNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFL

Query:  REEEEEDLKSGKVMAVTVIEPNGEAVSSLKLRLR------GPSYVLHGAWKYVVARNRHAIKRGRVLRIWYFRVDGG-----LWFALEVEKSEEEKNREI
          +EE+ + +G+ M V VIEP+   VS++ LR R       PSYVL G W  VVARN  A+KRGR +R+WYF    G     L FA+EV +S +  + E 
Subjt:  REEEEEDLKSGKVMAVTVIEPNGEAVSSLKLRLR------GPSYVLHGAWKYVVARNRHAIKRGRVLRIWYFRVDGG-----LWFALEVEKSEEEKNREI

Query:  AKRNLEIWYKQNVFS
         K   + W+ QN+F+
Subjt:  AKRNLEIWYKQNVFS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACGTAAACACTTCCGATTCTGCATCTCCCGCCGCCGTAGAATCAACCGGCGGCGATGTCAAATCCTCCGCCGTACAAGTTCAAGAATCGTCGGAATCTGGCGGCAA
AGAAGAAACAGAGGCCGGAATGATCTTGAAATCAAACTTCCCCTCGCGATTCACGAGATTAGTCAAAGATCCGGAGTCGATTCGGCCTCGGGTTCTGATGGAGAAGAGGC
TGCACAGATGGAACGTCGCCGGGAATCTGAACCGGTTTCCGATCGAGGCGAGGATGACGAAGGAGCCGTTCCTGCGGGAGGAGGAAGAGGAGGACTTGAAATCCGGCAAG
GTTATGGCGGTGACGGTGATCGAGCCGAACGGCGAAGCGGTGAGCTCTTTGAAATTGCGGTTGCGGGGGCCGTCGTACGTGCTGCACGGCGCGTGGAAATACGTGGTGGC
GCGTAACCGTCACGCGATTAAGAGGGGGAGAGTTTTGAGGATTTGGTACTTTCGCGTTGATGGCGGGCTCTGGTTTGCGCTTGAAGTTGAAAAAAGTGAAGAGGAAAAAA
ATCGTGAAATTGCGAAGCGCAATTTGGAAATATGGTATAAGCAAAATGTTTTTTCTTTTTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACGTAAACACTTCCGATTCTGCATCTCCCGCCGCCGTAGAATCAACCGGCGGCGATGTCAAATCCTCCGCCGTACAAGTTCAAGAATCGTCGGAATCTGGCGGCAA
AGAAGAAACAGAGGCCGGAATGATCTTGAAATCAAACTTCCCCTCGCGATTCACGAGATTAGTCAAAGATCCGGAGTCGATTCGGCCTCGGGTTCTGATGGAGAAGAGGC
TGCACAGATGGAACGTCGCCGGGAATCTGAACCGGTTTCCGATCGAGGCGAGGATGACGAAGGAGCCGTTCCTGCGGGAGGAGGAAGAGGAGGACTTGAAATCCGGCAAG
GTTATGGCGGTGACGGTGATCGAGCCGAACGGCGAAGCGGTGAGCTCTTTGAAATTGCGGTTGCGGGGGCCGTCGTACGTGCTGCACGGCGCGTGGAAATACGTGGTGGC
GCGTAACCGTCACGCGATTAAGAGGGGGAGAGTTTTGAGGATTTGGTACTTTCGCGTTGATGGCGGGCTCTGGTTTGCGCTTGAAGTTGAAAAAAGTGAAGAGGAAAAAA
ATCGTGAAATTGCGAAGCGCAATTTGGAAATATGGTATAAGCAAAATGTTTTTTCTTTTTGGTAA
Protein sequenceShow/hide protein sequence
MNVNTSDSASPAAVESTGGDVKSSAVQVQESSESGGKEETEAGMILKSNFPSRFTRLVKDPESIRPRVLMEKRLHRWNVAGNLNRFPIEARMTKEPFLREEEEEDLKSGK
VMAVTVIEPNGEAVSSLKLRLRGPSYVLHGAWKYVVARNRHAIKRGRVLRIWYFRVDGGLWFALEVEKSEEEKNREIAKRNLEIWYKQNVFSFW