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Sed0001168 (gene) of Chayote v1 genome

Gene IDSed0001168
OrganismSechium edule (Chayote v1)
Descriptionarabinogalactan peptide 20-like
Genome locationLG12:770785..771568
RNA-Seq ExpressionSed0001168
SyntenySed0001168
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147463.1 arabinogalactan peptide 20-like [Momordica charantia]3.7e-2482.72Show/hide
Query:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHS--PAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASS S SR  S+ FT FALIF ++SPL DAHS  PAPAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHS--PAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

XP_022924337.1 arabinogalactan peptide 16-like [Cucurbita moschata]3.3e-2581.93Show/hide
Query:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHS----PAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSNS SR  S  FTFF LI  +LSPL DAHS    PAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHS----PAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

XP_022979386.1 arabinogalactan peptide 20-like [Cucurbita maxima]2.4e-2379.52Show/hide
Query:  MASSNSISRVSSNFFTFFALIFSVLSPLADAH----SPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSNS  R  S  FTFF LI  +LSPL DAH    SPAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDASS NFFLN
Subjt:  MASSNSISRVSSNFFTFFALIFSVLSPLADAH----SPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

XP_023528757.1 arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo]2.0e-2583.95Show/hide
Query:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHS--PAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSNS SR  S  FTFF LI  +LSPL DAHS  PAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHS--PAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

XP_038905636.1 arabinogalactan protein 41-like [Benincasa hispida]2.2e-2484.81Show/hide
Query:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        M SSNS SR  S  FTFFALIF +LSPL DA +PAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSY+FFLN
Subjt:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

TrEMBL top hitse value%identityAlignment
A0A0A0L7A0 Uncharacterized protein7.5e-2379.75Show/hide
Query:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        M S NS SR     FTFF+LIF +LSPL DA +PAPAPAP+SDGTSIDQGIAYVLML+ALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

A0A6J1D1D7 arabinogalactan peptide 20-like1.8e-2482.72Show/hide
Query:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHS--PAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASS S SR  S+ FT FALIF ++SPL DAHS  PAPAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHS--PAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

A0A6J1E8M6 arabinogalactan peptide 16-like1.6e-2581.93Show/hide
Query:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHS----PAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSNS SR  S  FTFF LI  +LSPL DAHS    PAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHS----PAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

A0A6J1IAU1 arabinogalactan peptide 16-like1.2e-2076.25Show/hide
Query:  ASSNSISRVSSNFFTFFALIFSVLSPLADAHS--PAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        +SS+S     S FFT FALIF +L PL  AHS   APAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSY FFLN
Subjt:  ASSNSISRVSSNFFTFFALIFSVLSPLADAHS--PAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

A0A6J1IQM6 arabinogalactan peptide 20-like1.2e-2379.52Show/hide
Query:  MASSNSISRVSSNFFTFFALIFSVLSPLADAH----SPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSNS  R  S  FTFF LI  +LSPL DAH    SPAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDASS NFFLN
Subjt:  MASSNSISRVSSNFFTFFALIFSVLSPLADAH----SPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 161.2e-1766.67Show/hide
Query:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA-SSYNFF
        MAS NS++      F  F+ +F+V+  LA A S APAPAP SDGTSIDQGIAY+LM+VALVLTYLIHPLDA SSY+FF
Subjt:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA-SSYNFF

Q8L9T8 Arabinogalactan protein 411.4e-1368.33Show/hide
Query:  SRVSSNFFTFFALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH
        SR+     T  ++IF++L P+A A S APAPAP SDGT+IDQGIAYVLMLVALVLTYLIH
Subjt:  SRVSSNFFTFFALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH

Q9FK16 Arabinogalactan protein 225.7e-1270Show/hide
Query:  FALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH
        F +I  +L P+A +HS +PAPAP SDGTSIDQGIAYVLM+VAL LTY IH
Subjt:  FALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH

Q9M373 Arabinogalactan protein 203.1e-1865.82Show/hide
Query:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA--SSYNFF
        MAS NS++ ++      FA +F+V+SP A A S APAP+P SDGTSIDQGIAY+LM+VALVLTYLIHPLDA  SSY FF
Subjt:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA--SSYNFF

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 168.5e-1966.67Show/hide
Query:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA-SSYNFF
        MAS NS++      F  F+ +F+V+  LA A S APAPAP SDGTSIDQGIAY+LM+VALVLTYLIHPLDA SSY+FF
Subjt:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA-SSYNFF

AT3G61640.1 arabinogalactan protein 202.2e-1965.82Show/hide
Query:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA--SSYNFF
        MAS NS++ ++      FA +F+V+SP A A S APAP+P SDGTSIDQGIAY+LM+VALVLTYLIHPLDA  SSY FF
Subjt:  MASSNSISRVSSNFFTFFALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA--SSYNFF

AT5G24105.1 arabinogalactan protein 419.7e-1568.33Show/hide
Query:  SRVSSNFFTFFALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH
        SR+     T  ++IF++L P+A A S APAPAP SDGT+IDQGIAYVLMLVALVLTYLIH
Subjt:  SRVSSNFFTFFALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH

AT5G53250.1 arabinogalactan protein 224.1e-1370Show/hide
Query:  FALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH
        F +I  +L P+A +HS +PAPAP SDGTSIDQGIAYVLM+VAL LTY IH
Subjt:  FALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCTCCAATTCAATTTCTAGGGTTTCCTCAAACTTCTTCACATTCTTCGCTCTCATCTTCTCCGTTCTCTCGCCGCTCGCCGACGCTCACTCTCCGGCCCCCGC
TCCCGCTCCGGCAAGCGACGGGACCTCCATAGATCAGGGGATTGCGTACGTGCTAATGCTAGTGGCGTTGGTTCTCACATATCTCATTCATCCTCTCGATGCCTCTTCCT
ACAATTTTTTTCTCAATTGA
mRNA sequenceShow/hide mRNA sequence
GGCAAACACTACAACAAGCCTTTGCCGGTTTCTTATTTAAAACGAAATCACCACAATATCCTCCGCCCCAAGAATCTCTTTCTCTCTCATCTTCGACATTTGAATCAGAG
CTTCCAAACCGAGAGCAACAATGGCGTCCTCCAATTCAATTTCTAGGGTTTCCTCAAACTTCTTCACATTCTTCGCTCTCATCTTCTCCGTTCTCTCGCCGCTCGCCGAC
GCTCACTCTCCGGCCCCCGCTCCCGCTCCGGCAAGCGACGGGACCTCCATAGATCAGGGGATTGCGTACGTGCTAATGCTAGTGGCGTTGGTTCTCACATATCTCATTCA
TCCTCTCGATGCCTCTTCCTACAATTTTTTTCTCAATTGAATTCTAGGATTGTAGCAATGTTGGTGCTGTTCTTGCGATTTTCTTGAAGATGCTGTTTGTGGATAAATCA
TGGAAAAATTTCTCTCGTTGTGATATAGGTAGGTCTAAAGAGGAATGTGCGTGTCGAGTTTTCAGATTTTGGTCGATTCTCTTATTCATTGATGATTGCTATTCCATTAC
TTTTCAATTTTGTTTATGATTTATTCATTGGATTCATTTTGCAAA
Protein sequenceShow/hide protein sequence
MASSNSISRVSSNFFTFFALIFSVLSPLADAHSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN