; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0001170 (gene) of Chayote v1 genome

Gene IDSed0001170
OrganismSechium edule (Chayote v1)
Descriptionribosome maturation protein SBDS
Genome locationLG07:43442939..43445572
RNA-Seq ExpressionSed0001170
SyntenySed0001170
Gene Ontology termsGO:0042256 - mature ribosome assembly (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002140 - Ribosome maturation protein Sdo1/SBDS
IPR013087 - Zinc finger C2H2-type
IPR018023 - Ribosome maturation protein SBDS, conserved site
IPR018978 - Ribosome maturation protein Sdo1/SBDS, C-terminal
IPR019783 - Ribosome maturation protein Sdo1/SBDS, N-terminal
IPR036236 - Zinc finger C2H2 superfamily
IPR036786 - Ribosome maturation protein SBDS, N-terminal domain superfamily
IPR037188 - Ribosome maturation protein Sdo1/SBDS, central domain superfamily
IPR039100 - Ribosome maturation protein Sdo1/SBDS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592159.1 Ribosome maturation protein SBDS, partial [Cucurbita argyrosperma subsp. sororia]7.6e-18691.39Show/hide
Query:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK
        MSRSLVQP+GQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAF  DDQAEICLKILKEGELQIAGK
Subjt:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLM EIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RYTVPEQNF SLL+KLN+W+ASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV

Query:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQY-DDDYESVELPPKQIK--EPSIPQLSEALQKQTISVDGGNAPKEGKR
        SN+QSGNQQRS+ICELDPSFYRDCNPLM+ELQGKFEVLSFCLHEEGDTNVDQY DDD+E+VELPP+ +K  E +IPQLSEALQKQ ISVDGGN  KEGKR
Subjt:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQY-DDDYESVELPPKQIK--EPSIPQLSEALQKQTISVDGGNAPKEGKR

Query:  CSTCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF
        CSTCNV VGDA QFREHHKSEWHKHNVKRKTKNLPPLTEEECMVE+AMGDSESDLK+YSF
Subjt:  CSTCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF

XP_008466694.1 PREDICTED: ribosome maturation protein SBDS [Cucumis melo]1.3e-18591.64Show/hide
Query:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK
        MSRSLVQP+GQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFG DDQ EICLKILKEGELQ+AGK
Subjt:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLM EIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RY VPEQN  SLL+KLNAW+ASIV
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV

Query:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQYDDDYESVELPPKQIK--EPSIPQLSEALQKQTISVDGGNAPKEGKRC
        SN+QSGNQQRSIICELDPSFYRDCNPLM+EL G+FEVLSFCLHEEGDTNVDQY+DDYE+VEL P+Q+K  E SIPQLSEALQKQTISV+  NAPKEGKRC
Subjt:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQYDDDYESVELPPKQIK--EPSIPQLSEALQKQTISVDGGNAPKEGKRC

Query:  STCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF
        STCNVAVGDAT+FREHHKS+WHKHNVKRKTKNLPPLTEEEC VELAMGDSESDLK+YSF
Subjt:  STCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF

XP_022153710.1 ribosome maturation protein SBDS [Momordica charantia]5.8e-18691.32Show/hide
Query:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK
        MSRSLVQP+GQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAF  DDQ  ICLKILKEGELQIA K
Subjt:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLM EIHFA+DPNHSSKKQALEVIHELQKQFPIKRSPMR+RYTVPEQNF SLLEKLNAWNAS +
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV

Query:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQYDDDYESVELPPKQIKEPSIPQLSEALQKQTISVDGGNAPKEGKRCST
        SN+QSG+QQRS+ICELDPSFYRDCNPLM+ELQG+FEVLSFCLHEEGDTNVDQYDDD+++ ELPP+Q+KE  IPQLSEALQ+QTISV+G NAPKEGKRCST
Subjt:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQYDDDYESVELPPKQIKEPSIPQLSEALQKQTISVDGGNAPKEGKRCST

Query:  CNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF
        CNVAVGDATQFREHHK EWHKHNVKRKTKNLPPLTEEECMVELAMG+SESDLKDYSF
Subjt:  CNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF

XP_022936066.1 ribosome maturation protein SBDS [Cucurbita moschata]7.6e-18691.39Show/hide
Query:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK
        MSRSLVQP+GQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAF  DDQAEICLKILKEGELQIAGK
Subjt:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLM EIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RYTVPEQNF SLL+KLN+W+ASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV

Query:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQY-DDDYESVELPPKQIK--EPSIPQLSEALQKQTISVDGGNAPKEGKR
        SN+QSGNQQRS+ICELDPSFYRDCNPLM+ELQGKFEVLSFCLHEEGDTNVDQY DDD+E+VELPP+ +K  E +IPQLSEALQKQ ISVDGGN  KEGKR
Subjt:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQY-DDDYESVELPPKQIK--EPSIPQLSEALQKQTISVDGGNAPKEGKR

Query:  CSTCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF
        CSTCNV VGDA QFREHHKSEWHKHNVKRKTKNLPPLTEEECMVE+AMGDSESDLK+YSF
Subjt:  CSTCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF

XP_038886377.1 ribosome maturation protein SBDS [Benincasa hispida]5.8e-18691.64Show/hide
Query:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK
        MSRSLVQP+GQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAF  DDQ EICLKILKEGELQIAGK
Subjt:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLM EIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RY VPEQNF SLL+KLNAW+ASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV

Query:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQYDDDYESVELPPKQIK--EPSIPQLSEALQKQTISVDGGNAPKEGKRC
        SN+QSGNQQRSIICELDPSFYRDCNPLM+ELQG+FEVLSFCLHEEGDTNVDQYDDDYE+VELPP+Q+K  E +IPQL+EALQKQTISV+  NA KEGKRC
Subjt:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQYDDDYESVELPPKQIK--EPSIPQLSEALQKQTISVDGGNAPKEGKRC

Query:  STCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF
        STCNV VGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEEC VELAMGD+ESDLK+YSF
Subjt:  STCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF

TrEMBL top hitse value%identityAlignment
A0A1S3CRW0 ribosome maturation protein SBDS6.3e-18691.64Show/hide
Query:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK
        MSRSLVQP+GQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFG DDQ EICLKILKEGELQ+AGK
Subjt:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLM EIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RY VPEQN  SLL+KLNAW+ASIV
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV

Query:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQYDDDYESVELPPKQIK--EPSIPQLSEALQKQTISVDGGNAPKEGKRC
        SN+QSGNQQRSIICELDPSFYRDCNPLM+EL G+FEVLSFCLHEEGDTNVDQY+DDYE+VEL P+Q+K  E SIPQLSEALQKQTISV+  NAPKEGKRC
Subjt:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQYDDDYESVELPPKQIK--EPSIPQLSEALQKQTISVDGGNAPKEGKRC

Query:  STCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF
        STCNVAVGDAT+FREHHKS+WHKHNVKRKTKNLPPLTEEEC VELAMGDSESDLK+YSF
Subjt:  STCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF

A0A5A7UXA4 Ribosome maturation protein SBDS6.3e-18691.64Show/hide
Query:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK
        MSRSLVQP+GQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFG DDQ EICLKILKEGELQ+AGK
Subjt:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLM EIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RY VPEQN  SLL+KLNAW+ASIV
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV

Query:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQYDDDYESVELPPKQIK--EPSIPQLSEALQKQTISVDGGNAPKEGKRC
        SN+QSGNQQRSIICELDPSFYRDCNPLM+EL G+FEVLSFCLHEEGDTNVDQY+DDYE+VEL P+Q+K  E SIPQLSEALQKQTISV+  NAPKEGKRC
Subjt:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQYDDDYESVELPPKQIK--EPSIPQLSEALQKQTISVDGGNAPKEGKRC

Query:  STCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF
        STCNVAVGDAT+FREHHKS+WHKHNVKRKTKNLPPLTEEEC VELAMGDSESDLK+YSF
Subjt:  STCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF

A0A6J1DHK8 ribosome maturation protein SBDS2.8e-18691.32Show/hide
Query:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK
        MSRSLVQP+GQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAF  DDQ  ICLKILKEGELQIA K
Subjt:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLM EIHFA+DPNHSSKKQALEVIHELQKQFPIKRSPMR+RYTVPEQNF SLLEKLNAWNAS +
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV

Query:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQYDDDYESVELPPKQIKEPSIPQLSEALQKQTISVDGGNAPKEGKRCST
        SN+QSG+QQRS+ICELDPSFYRDCNPLM+ELQG+FEVLSFCLHEEGDTNVDQYDDD+++ ELPP+Q+KE  IPQLSEALQ+QTISV+G NAPKEGKRCST
Subjt:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQYDDDYESVELPPKQIKEPSIPQLSEALQKQTISVDGGNAPKEGKRCST

Query:  CNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF
        CNVAVGDATQFREHHK EWHKHNVKRKTKNLPPLTEEECMVELAMG+SESDLKDYSF
Subjt:  CNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF

A0A6J1F6G6 ribosome maturation protein SBDS3.7e-18691.39Show/hide
Query:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK
        MSRSLVQP+GQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAF  DDQAEICLKILKEGELQIAGK
Subjt:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLM EIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RYTVPEQNF SLL+KLN+W+ASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV

Query:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQY-DDDYESVELPPKQIK--EPSIPQLSEALQKQTISVDGGNAPKEGKR
        SN+QSGNQQRS+ICELDPSFYRDCNPLM+ELQGKFEVLSFCLHEEGDTNVDQY DDD+E+VELPP+ +K  E +IPQLSEALQKQ ISVDGGN  KEGKR
Subjt:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQY-DDDYESVELPPKQIK--EPSIPQLSEALQKQTISVDGGNAPKEGKR

Query:  CSTCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF
        CSTCNV VGDA QFREHHKSEWHKHNVKRKTKNLPPLTEEECMVE+AMGDSESDLK+YSF
Subjt:  CSTCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF

A0A6J1IK36 ribosome maturation protein SBDS1.1e-18590.83Show/hide
Query:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK
        MSRSLVQP+GQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAF  DDQAEICLKILKEGELQIAGK
Subjt:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLM EIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RYTVPEQNF SLL+KLN+W+ASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV

Query:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQY-DDDYESVELPPKQIK--EPSIPQLSEALQKQTISVDGGNAPKEGKR
        SN+QSGNQQRS+ICELDPSFYRDCNPLM+ELQGKFEVLSFCLHEEGDTNVDQY DDD+E+VELPP+ +K  E +IPQLSEALQKQ ISVDGGN  KEGKR
Subjt:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQY-DDDYESVELPPKQIK--EPSIPQLSEALQKQTISVDGGNAPKEGKR

Query:  CSTCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF
        CSTCNV VGDA QFREHHKSEWHKHN+KRKTKNLPPLTEEECMVE+A+GDSESDLK+YSF
Subjt:  CSTCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF

SwissProt top hitse value%identityAlignment
P70122 Ribosome maturation protein SBDS1.1e-6554.25Show/hide
Query:  SLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGKERE
        S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVSKG +AK +DL +AFG DDQ EIC +IL +GE+Q++ KER 
Subjt:  SLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIVSNE
         QL   FRDIATIV  K  NPETKRPYT+ +IER M +IH++V PN S+K+QALEVI +L+++  I+R+ MR+R+ +P      L EKL      + S +
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIVSNE

Query:  QSGNQQRSIICELDPSFYRDCNPLM---TELQGKFEVLSFCLHEEGD
         S  QQ  I+C +DP  +R+ + L+   T+ +G  EVLS    EEGD
Subjt:  QSGNQQRSIICELDPSFYRDCNPLM---TELQGKFEVLSFCLHEEGD

Q3SWZ6 Ribosome maturation protein SBDS1.4e-6554.25Show/hide
Query:  SLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGKERE
        S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVSKG +AK +DL +AFG DDQ EIC +IL +GE+Q++ KER 
Subjt:  SLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIVSNE
         QL   FRDIATIV  K  NPETKRPYT+ +IER M +IH++V PN S+K+QALEVI +L+++  I+R+ MR+R+ +P      L EKL      ++ +E
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIVSNE

Query:  QSGNQQRSIICELDPSFYRDCNPLM---TELQGKFEVLSFCLHEEGD
          G QQ  I+C +DP  +R+ + L+   T+ +G  EVLS    EEGD
Subjt:  QSGNQQRSIICELDPSFYRDCNPLM---TELQGKFEVLSFCLHEEGD

Q5RAZ2 Ribosome maturation protein SBDS2.6e-6453.44Show/hide
Query:  SLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGKERE
        S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVSKG +AK +DL +AFG DDQ EIC +IL +GE+Q++ KER 
Subjt:  SLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIVSNE
         QL   FRDIATIV  K  NPETKRPYT+ +IER M +IH++V  N S+K+QALEVI +L+++  I+R+ MR+R+ +P      L EKL      ++ +E
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIVSNE

Query:  QSGNQQRSIICELDPSFYRDCNPLM---TELQGKFEVLSFCLHEEGD
          G QQ  I+C +DP  +R+ + L+   T+ +G  EVL+    EEGD
Subjt:  QSGNQQRSIICELDPSFYRDCNPLM---TELQGKFEVLSFCLHEEGD

Q5RK30 Ribosome maturation protein SBDS1.1e-6554.25Show/hide
Query:  SLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGKERE
        S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVSKG +AK +DL +AFG DDQ EIC +IL +GE+Q++ KER 
Subjt:  SLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIVSNE
         QL   FRDIATIV  K  NPETKRPYT+ +IER M +IH++V PN S+K+QALEVI +L+++  I+R+ MR+R+ +P      L EKL      + S +
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIVSNE

Query:  QSGNQQRSIICELDPSFYRDCNPLM---TELQGKFEVLSFCLHEEGD
         S  QQ  I+C +DP  +R+ + L+   T+ +G  EVLS    EEGD
Subjt:  QSGNQQRSIICELDPSFYRDCNPLM---TELQGKFEVLSFCLHEEGD

Q9Y3A5 Ribosome maturation protein SBDS2.6e-6453.44Show/hide
Query:  SLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGKERE
        S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVSKG +AK +DL +AFG DDQ EIC +IL +GE+Q++ KER 
Subjt:  SLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIVSNE
         QL   FRDIATIV  K  NPETKRPYT+ +IER M +IH++V  N S+K+QALEVI +L+++  I+R+ MR+R+ +P      L EKL      ++ +E
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIVSNE

Query:  QSGNQQRSIICELDPSFYRDCNPLM---TELQGKFEVLSFCLHEEGD
          G QQ  I+C +DP  +R+ + L+   T+ +G  EVL+    EEGD
Subjt:  QSGNQQRSIICELDPSFYRDCNPLM---TELQGKFEVLSFCLHEEGD

Arabidopsis top hitse value%identityAlignment
AT1G43860.1 sequence-specific DNA binding transcription factors1.2e-13163.17Show/hide
Query:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK
        MS++LVQPVGQKRLTNVAVVRLKK G RFEIACYKNKVLSWRSGVEKD+DEVLQS  VYSNVSKGVLAK+KDL  +FG DD  +IC+ IL++GELQ+AGK
Subjt:  MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV
        ERE+Q S+QFRDIATIVMQKT NPET+RPYTISM+ERLMHEIHFAVDP+ +SKKQAL+VI ELQK FPIKRSPMR+R TVP QNF SLLEKL  W+ S+V
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIV

Query:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQYDDDYE----------SVELPPKQIKEPSIPQLSEALQKQTISV----
        S ++SG Q  S +CE++P  +R+C+  +  +QG+ E+L+  +H EGDT++D YD+  +            E   K + +P + +LS+ LQKQ IS     
Subjt:  SNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQYDDDYE----------SVELPPKQIKEPSIPQLSEALQKQTISV----

Query:  -DGGNAPKEGKRCSTCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF
           G   K+G +CSTCN  VG+A Q+REH KS+WHKHN+KRKT+ LPP++ +ECM E+ M DS +DLKDYSF
Subjt:  -DGGNAPKEGKRCSTCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF

AT2G24500.1 Zinc finger protein 6221.8e-0442.86Show/hide
Query:  GKRCSTCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTE
        G  C++CN    D  + + H+KSEWH++N+KRK   +P +TE
Subjt:  GKRCSTCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTE

AT4G31420.1 Zinc finger protein 6222.4e-0440.48Show/hide
Query:  GKRCSTCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTE
        G  C+ CN+   D  +   H+KS+WH++N+KRK   +P +TE
Subjt:  GKRCSTCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTE

AT4G31420.2 Zinc finger protein 6222.4e-0440.48Show/hide
Query:  GKRCSTCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTE
        G  C+ CN+   D  +   H+KS+WH++N+KRK   +P +TE
Subjt:  GKRCSTCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCGATCGCTGGTGCAGCCGGTGGGGCAGAAGAGGCTGACGAACGTGGCGGTGGTTCGTTTGAAAAAACACGGTCTTCGTTTCGAGATTGCCTGTTACAAGAACAA
GGTTCTTTCATGGCGTTCTGGCGTGGAGAAAGATTTGGATGAGGTTTTGCAATCGCAGATTGTTTATTCAAATGTTTCCAAAGGGGTTCTTGCCAAAACTAAAGATTTGA
AAGCAGCCTTTGGCGTAGATGATCAGGCAGAAATTTGTCTGAAGATTCTTAAAGAAGGGGAACTCCAAATTGCAGGGAAGGAAAGGGAGGCTCAATTATCTAATCAGTTT
CGTGATATTGCAACCATTGTTATGCAAAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAACGGCTCATGCATGAAATTCATTTTGCTGTTGA
TCCAAATCACAGCTCAAAGAAACAGGCCCTAGAGGTCATTCACGAGCTCCAAAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATGCGATATACCGTTCCTGAACAGA
ACTTCGCATCTCTCCTTGAGAAGTTAAATGCCTGGAATGCTAGCATCGTTTCCAATGAGCAGTCTGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTT
TATCGGGACTGTAATCCATTAATGACTGAACTACAAGGAAAATTTGAAGTTCTCTCTTTTTGCTTGCATGAGGAAGGGGACACCAATGTAGATCAATATGATGATGATTA
CGAGAGCGTTGAACTCCCACCCAAGCAAATCAAAGAACCATCCATTCCTCAGCTAAGTGAAGCTTTACAAAAACAGACAATCTCGGTTGATGGCGGAAATGCACCGAAGG
AAGGTAAACGCTGCAGCACATGCAACGTAGCTGTTGGGGATGCTACTCAGTTTAGAGAGCATCACAAGAGCGAATGGCATAAGCATAACGTCAAGCGCAAGACCAAGAAT
CTCCCGCCCCTGACCGAAGAAGAGTGCATGGTAGAATTGGCAATGGGCGACTCTGAGTCTGACCTCAAAGACTATTCATTTTGA
mRNA sequenceShow/hide mRNA sequence
CCTTTTTTTAGGGTTGTAAAGTTCAGGGAGAATCACAAAATTTGGGGGAAAATTTAGGAAGGGTGTTTGTGTGTTGAAGGAAAAGATGTCCCGATCGCTGGTGCAGCCGG
TGGGGCAGAAGAGGCTGACGAACGTGGCGGTGGTTCGTTTGAAAAAACACGGTCTTCGTTTCGAGATTGCCTGTTACAAGAACAAGGTTCTTTCATGGCGTTCTGGCGTG
GAGAAAGATTTGGATGAGGTTTTGCAATCGCAGATTGTTTATTCAAATGTTTCCAAAGGGGTTCTTGCCAAAACTAAAGATTTGAAAGCAGCCTTTGGCGTAGATGATCA
GGCAGAAATTTGTCTGAAGATTCTTAAAGAAGGGGAACTCCAAATTGCAGGGAAGGAAAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATTGCAACCATTGTTATGC
AAAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAACGGCTCATGCATGAAATTCATTTTGCTGTTGATCCAAATCACAGCTCAAAGAAACAG
GCCCTAGAGGTCATTCACGAGCTCCAAAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATGCGATATACCGTTCCTGAACAGAACTTCGCATCTCTCCTTGAGAAGTT
AAATGCCTGGAATGCTAGCATCGTTTCCAATGAGCAGTCTGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTTTATCGGGACTGTAATCCATTAATGA
CTGAACTACAAGGAAAATTTGAAGTTCTCTCTTTTTGCTTGCATGAGGAAGGGGACACCAATGTAGATCAATATGATGATGATTACGAGAGCGTTGAACTCCCACCCAAG
CAAATCAAAGAACCATCCATTCCTCAGCTAAGTGAAGCTTTACAAAAACAGACAATCTCGGTTGATGGCGGAAATGCACCGAAGGAAGGTAAACGCTGCAGCACATGCAA
CGTAGCTGTTGGGGATGCTACTCAGTTTAGAGAGCATCACAAGAGCGAATGGCATAAGCATAACGTCAAGCGCAAGACCAAGAATCTCCCGCCCCTGACCGAAGAAGAGT
GCATGGTAGAATTGGCAATGGGCGACTCTGAGTCTGACCTCAAAGACTATTCATTTTGAGCTGCCCCTTAGTGTTATGCTTGTGGTATGAGTTTGTTTTACTTCAATTTT
TGTCTACATAGCAAGTAAAAATACTGTATTTGGCTGGTCATAGCTAACACCTATAAGCCTATTCTCGCAGTTTTAGTTTTTACACTTTTCTCAGAATTGAGGTTCCAACG
GTGTTTAATATTAATCAAGATATTATGTAAATTTGTC
Protein sequenceShow/hide protein sequence
MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGKEREAQLSNQF
RDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIVSNEQSGNQQRSIICELDPSF
YRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQYDDDYESVELPPKQIKEPSIPQLSEALQKQTISVDGGNAPKEGKRCSTCNVAVGDATQFREHHKSEWHKHNVKRKTKN
LPPLTEEECMVELAMGDSESDLKDYSF