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Sed0001179 (gene) of Chayote v1 genome

Gene IDSed0001179
OrganismSechium edule (Chayote v1)
DescriptionE3 ubiquitin-protein ligase RNF181-like protein
Genome locationLG09:40531782..40538531
RNA-Seq ExpressionSed0001179
SyntenySed0001179
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571005.1 E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia]3.4e-0858.82Show/hide
Query:  DEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCR
        +EE DLG CSICLD +       I+T CG  YHE CI  WL+NS+SCPLCR
Subjt:  DEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCR

KGN66555.2 hypothetical protein Csa_007514 [Cucumis sativus]4.0e-0952.63Show/hide
Query:  VSFLLRQNTVNFHSSVIIDNIRQFDEELDLGVCSICLDHIF-DNTKVAIKTACGQFYHELCILNWLNNSNSCPLCR
        +SF  RQ T N  S V    I       DLG CSICLD +   N +V +K +CG  YHELCIL WL+NS+SCPLCR
Subjt:  VSFLLRQNTVNFHSSVIIDNIRQFDEELDLGVCSICLDHIF-DNTKVAIKTACGQFYHELCILNWLNNSNSCPLCR

XP_022944063.1 RING-H2 finger protein ATL16-like [Cucurbita moschata]3.4e-0858.82Show/hide
Query:  DEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCR
        +EE DLG CSICLD +       I+T CG  YHE CI  WL+NS+SCPLCR
Subjt:  DEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCR

XP_022985641.1 RING-H2 finger protein ATL16-like [Cucurbita maxima]1.2e-0858.82Show/hide
Query:  DEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCR
        +EE+DLG CSICLD +       I+T CG  YHE CI  WL+NS+SCPLCR
Subjt:  DEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCR

XP_023512244.1 RING-H2 finger protein ATL16-like [Cucurbita pepo subsp. pepo]2.0e-0851.72Show/hide
Query:  IDNIRQFDEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCR
        ++ +   +EE DLG CSICLD +       I+T CG  YHE CI  WL+NS+SCPLCR
Subjt:  IDNIRQFDEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCR

TrEMBL top hitse value%identityAlignment
A0A0A0LW68 RING-type domain-containing protein1.7e-1052.5Show/hide
Query:  VSFLLRQNTVNFHSSVIIDNIRQFDEELDLGVCSICLDHIF-DNTKVAIKTACGQFYHELCILNWLNNSNSCPLCRNTVL
        +SF  RQ T N  S V    I       DLG CSICLD +   N +V +K +CG  YHELCIL WL+NS+SCPLCR +VL
Subjt:  VSFLLRQNTVNFHSSVIIDNIRQFDEELDLGVCSICLDHIF-DNTKVAIKTACGQFYHELCILNWLNNSNSCPLCRNTVL

A0A1S4DZR1 uncharacterized protein LOC1079912692.1e-0845.16Show/hide
Query:  VIIDNIRQFDEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCRNT
        V+ + +R+   E + G CS+CLD +    +  I+  CG  YHE CI  WLNN+NSCPLCR +
Subjt:  VIIDNIRQFDEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCRNT

A0A5A7TLM1 E3 ubiquitin-protein ligase RNF181-like protein2.1e-0845.16Show/hide
Query:  VIIDNIRQFDEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCRNT
        V+ + +R+   E + G CS+CLD +    +  I+  CG  YHE CI  WLNN+NSCPLCR +
Subjt:  VIIDNIRQFDEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCRNT

A0A6J1FXN0 RING-H2 finger protein ATL16-like1.6e-0858.82Show/hide
Query:  DEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCR
        +EE DLG CSICLD +       I+T CG  YHE CI  WL+NS+SCPLCR
Subjt:  DEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCR

A0A6J1J8T7 RING-H2 finger protein ATL16-like5.6e-0958.82Show/hide
Query:  DEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCR
        +EE+DLG CSICLD +       I+T CG  YHE CI  WL+NS+SCPLCR
Subjt:  DEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCR

SwissProt top hitse value%identityAlignment
Q5BIY5 RING finger protein 1459.5e-0635.62Show/hide
Query:  SFLLRQNTVNFHSSVIIDNIRQFDEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLC
        SFLLR++ VN   S+ +    Q ++  D  +CSIC    + +   A+ T C  F+H  C+  WL    +CPLC
Subjt:  SFLLRQNTVNFHSSVIIDNIRQFDEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLC

Q5SWK7 RING finger protein 1459.5e-0635.62Show/hide
Query:  SFLLRQNTVNFHSSVIIDNIRQFDEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLC
        SFLLR++ VN   S+ +    Q ++  D  +C+IC    + + K A+ T C  F+H  C+  WL   ++CPLC
Subjt:  SFLLRQNTVNFHSSVIIDNIRQFDEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLC

Q7ZWF4 RING finger protein 1457.3e-0635.44Show/hide
Query:  SFLLRQNTVNFHSSVIIDNIRQFDEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCRNTVLS
        SFLLR++ V+   S+   +  Q  +  D  +CSIC    F + K A+ T C  F+H  C+  WL    +CPLC   + S
Subjt:  SFLLRQNTVNFHSSVIIDNIRQFDEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCRNTVLS

Q96MT1 RING finger protein 1459.5e-0636.99Show/hide
Query:  SFLLRQNTVNFHSSVIIDNIRQFDEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLC
        SFLLR++ VN   S+ I    Q ++  D  +C+IC    + + K A+ T C  F+H  C+  WL    +CPLC
Subjt:  SFLLRQNTVNFHSSVIIDNIRQFDEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLC

Q9WTV7 E3 ubiquitin-protein ligase RLIM5.6e-0640Show/hide
Query:  IDNI--RQFDEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCRNTVLS
        IDN+  R F E   L  CS+C+    +  K+  K  C   YH  CI  WL+ +++CP+CR  VLS
Subjt:  IDNI--RQFDEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCRNTVLS

Arabidopsis top hitse value%identityAlignment
AT1G72310.1 RING/U-box superfamily protein5.7e-0640.43Show/hide
Query:  CSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCRNTVL
        CSICL  +    K  +   C   +H  CI  W  + ++CP+CRNTVL
Subjt:  CSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCRNTVL

AT2G37150.1 RING/U-box superfamily protein9.8e-0638.3Show/hide
Query:  CSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCRNTVL
        C+ICL+   +  ++     CG  YH  CI  WL+  NSCP+C++  L
Subjt:  CSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCRNTVL

AT3G02340.1 RING/U-box superfamily protein8.9e-0746.15Show/hide
Query:  EELDLG--VCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCR
        EELD G  VC++C D +    KV  +  C  FYH  CI+ WL   N+CP+CR
Subjt:  EELDLG--VCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCR

AT3G30460.1 RING/U-box superfamily protein6.1e-0844.23Show/hide
Query:  ELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCRNTV
        E  L VC+IC + +  N +++ +  C  +YH+ CI NWL+N N+CPLCR+ V
Subjt:  ELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCRNTV

AT4G12140.1 RING/U-box superfamily protein3.4e-0630.77Show/hide
Query:  SVIIDNIRQFDEELDLGVCSICLDHIFDNTKVA-IKTACGQFYHELCILNWLNNSNSCPLCRNTV
        S+  + ++ F+ E D   CSICL  +  ++K    + +C   +H  C++ WL   N+CP+CR  +
Subjt:  SVIIDNIRQFDEELDLGVCSICLDHIFDNTKVA-IKTACGQFYHELCILNWLNNSNSCPLCRNTV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACCAAAGAATGGGCCACCCCTCTTCTCGAATTCTAAACAGTGTGATGCCAAGATAAAAACCATTATATGTGATGGTGGTGGAGAGTTCAAACCCATTATTCATCT
GTGCAACCTAATCCCTTGTTCAGTGGTCTTACTCAATACCAACAACCAGTTGATTGGTCTAAAGTGGAACCTGTTCATTATAAATATGCATGTCTGTTTCTTCAATGGCA
AGAAGCCATGGACAGAGAATTTTCCGCTCTTCAACAGCAGAACACTTGGACTTTGGTGCCTGCTACTAGAGGTCGACTCAGGTAATCTCCTAGGGTATTTTTTCTTTCGT
TGTTTGCTAAATAATTTATTTTGTAAACATTACAGTATTGCCATTGGCGCCCATGTTGTCTCCTTCCTCCTTCGACAAAACACAGTCAACTTCCATTCCTCCGTCATCAT
CGATAACATCCGACAGTTTGATGAAGAACTTGATTTGGGAGTTTGCTCTATATGTTTGGATCATATATTCGATAACACGAAAGTGGCCATAAAGACCGCATGCGGACAAT
TCTATCATGAACTATGCATCCTCAACTGGCTTAACAACTCCAATTCTTGCCCCTTGTGCCGAAACACGGTGTTATCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCACCAAAGAATGGGCCACCCCTCTTCTCGAATTCTAAACAGTGTGATGCCAAGATAAAAACCATTATATGTGATGGTGGTGGAGAGTTCAAACCCATTATTCATCT
GTGCAACCTAATCCCTTGTTCAGTGGTCTTACTCAATACCAACAACCAGTTGATTGGTCTAAAGTGGAACCTGTTCATTATAAATATGCATGTCTGTTTCTTCAATGGCA
AGAAGCCATGGACAGAGAATTTTCCGCTCTTCAACAGCAGAACACTTGGACTTTGGTGCCTGCTACTAGAGGTCGACTCAGGTAATCTCCTAGGGTATTTTTTCTTTCGT
TGTTTGCTAAATAATTTATTTTGTAAACATTACAGTATTGCCATTGGCGCCCATGTTGTCTCCTTCCTCCTTCGACAAAACACAGTCAACTTCCATTCCTCCGTCATCAT
CGATAACATCCGACAGTTTGATGAAGAACTTGATTTGGGAGTTTGCTCTATATGTTTGGATCATATATTCGATAACACGAAAGTGGCCATAAAGACCGCATGCGGACAAT
TCTATCATGAACTATGCATCCTCAACTGGCTTAACAACTCCAATTCTTGCCCCTTGTGCCGAAACACGGTGTTATCATAG
Protein sequenceShow/hide protein sequence
MAPKNGPPLFSNSKQCDAKIKTIICDGGGEFKPIIHLCNLIPCSVVLLNTNNQLIGLKWNLFIINMHVCFFNGKKPWTENFPLFNSRTLGLWCLLLEVDSGNLLGYFFFR
CLLNNLFCKHYSIAIGAHVVSFLLRQNTVNFHSSVIIDNIRQFDEELDLGVCSICLDHIFDNTKVAIKTACGQFYHELCILNWLNNSNSCPLCRNTVLS