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Sed0001188 (gene) of Chayote v1 genome

Gene IDSed0001188
OrganismSechium edule (Chayote v1)
DescriptionIdentified as a screen for stress-responsive genes.
Genome locationLG07:21903059..21903799
RNA-Seq ExpressionSed0001188
SyntenySed0001188
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7015455.1 hypothetical protein SDJN02_23091, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-3561.93Show/hide
Query:  MADGYSKM----KFKSRSIDYSDLSSLPRS--------LSNPNSPHSDHKMT--RPPRLPEEEEE------EYSSAATAPAAALKRNTSVSSSASGFQSA
        MAD YSK+    KFKSRSIDYSDL+SLP S        +SNPNS  S+   T  +  RLPEEEEE      EY    +A AAAL RN SVSSS SGF SA
Subjt:  MADGYSKM----KFKSRSIDYSDLSSLPRS--------LSNPNSPHSDHKMT--RPPRLPEEEEE------EYSSAATAPAAALKRNTSVSSSASGFQSA

Query:  VKRAMSMRRSSSVAERYCRIHDQFATLASPIDDD-------------GGSV-RISKKKKKNAARKIVGACKRFFGL
        VKRA+SMRRSSSVAERYCRIHDQFATLASPIDDD             GGSV +  KKKKKN+A KIV ACKR FG+
Subjt:  VKRAMSMRRSSSVAERYCRIHDQFATLASPIDDD-------------GGSV-RISKKKKKNAARKIVGACKRFFGL

KAG7031359.1 hypothetical protein SDJN02_05399, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-3664.91Show/hide
Query:  MADGYSKM----KFKSRSIDYSDLSSLPRSL------SNPNSPHSDHKMT----RPPR--LPEEEEEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRA
        MAD YSK+    K KSRS+DYSDLSSLP SL      SNPNS  SD   T     PP   LPEEEE+EY SAATA A+ L+RN SVS+SASGF SAVKRA
Subjt:  MADGYSKM----KFKSRSIDYSDLSSLPRSL------SNPNSPHSDHKMT----RPPR--LPEEEEEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRA

Query:  MSMRRSSSVAERYCRIHDQFATLASPIDDD-------------GGSVRISKKKKKNAARKIVGACKRFFGL
        +SMRRSSSVAERY RIHDQF TLASPIDDD             GGSVR   KKK NAA KIV ACKR FGL
Subjt:  MSMRRSSSVAERYCRIHDQFATLASPIDDD-------------GGSVRISKKKKKNAARKIVGACKRFFGL

KGN56255.1 hypothetical protein Csa_011668 [Cucumis sativus]3.2e-3461.76Show/hide
Query:  MADGYSKM----KFKSRSIDYSDLSSLPRSL---SNPNSPHSDHKMTRPP--RLPEEEEE------EYSSAATAPAAALKRNTSVSSSASGFQSAVKRAM
        MADGYSK+    KFKSRSIDYSDLSSLP SL   +  ++P   ++   PP  RLPEE+EE      +    AT  AA L RN+SVSSS SGFQSAVKRA+
Subjt:  MADGYSKM----KFKSRSIDYSDLSSLPRSL---SNPNSPHSDHKMTRPP--RLPEEEEE------EYSSAATAPAAALKRNTSVSSSASGFQSAVKRAM

Query:  SMRRSSSVAERYCRIHDQFATLASPIDDD-------------GGSVRISKKKKKNAARKIVGACKRFFGL
        SMRRSSSVAERYCRIHDQFAT ASPI+DD             GGS    KKKKKNAA KIV ACKR FGL
Subjt:  SMRRSSSVAERYCRIHDQFATLASPIDDD-------------GGSVRISKKKKKNAARKIVGACKRFFGL

XP_022136741.1 uncharacterized protein LOC111008371 [Momordica charantia]3.2e-3461.4Show/hide
Query:  MADGYSKM----KFKSRSIDYSDLSSLPRSLS------NPNSPHSDHKMTRPPR------LPEEEEEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRA
        MADGYSK+    KFKSRSIDYSDL+SLP SL       NPNS   +    R  R      LPEEEE+EY        AAL RN+SVSSSASG  SAVKRA
Subjt:  MADGYSKM----KFKSRSIDYSDLSSLPRSLS------NPNSPHSDHKMTRPPR------LPEEEEEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRA

Query:  MSMRRSSSVAERYCRIHDQFATLASPIDDD-------------GGSVRISKKKKKNAARKIVGACKRFFGL
        +SMRRSSSVAERYCRIHDQFATLASPIDD+              GSVR   +KKKNAA KIV ACKR FGL
Subjt:  MSMRRSSSVAERYCRIHDQFATLASPIDDD-------------GGSVRISKKKKKNAARKIVGACKRFFGL

XP_022929198.1 uncharacterized protein LOC111435863 [Cucurbita moschata]9.9e-3661.93Show/hide
Query:  MADGYSKM----KFKSRSIDYSDLSSLPRS--------LSNPNSPHSDHKMT--RPPRLPEEEEE------EYSSAATAPAAALKRNTSVSSSASGFQSA
        MAD YSK+    KFKSRSIDYSDL+SLP S        +SNPNS  S+   T  +  RLPEEEEE      EY    +A AAAL RN SVSSS SGF SA
Subjt:  MADGYSKM----KFKSRSIDYSDLSSLPRS--------LSNPNSPHSDHKMT--RPPRLPEEEEE------EYSSAATAPAAALKRNTSVSSSASGFQSA

Query:  VKRAMSMRRSSSVAERYCRIHDQFATLASPIDDD-------------GGSV-RISKKKKKNAARKIVGACKRFFGL
        VKRA+SMRRSSSVAERYCRIHDQFATLASPIDDD             GGSV +  KKKKKN+A KIV ACKR FG+
Subjt:  VKRAMSMRRSSSVAERYCRIHDQFATLASPIDDD-------------GGSV-RISKKKKKNAARKIVGACKRFFGL

TrEMBL top hitse value%identityAlignment
A0A0A0L2N9 Uncharacterized protein1.5e-3461.76Show/hide
Query:  MADGYSKM----KFKSRSIDYSDLSSLPRSL---SNPNSPHSDHKMTRPP--RLPEEEEE------EYSSAATAPAAALKRNTSVSSSASGFQSAVKRAM
        MADGYSK+    KFKSRSIDYSDLSSLP SL   +  ++P   ++   PP  RLPEE+EE      +    AT  AA L RN+SVSSS SGFQSAVKRA+
Subjt:  MADGYSKM----KFKSRSIDYSDLSSLPRSL---SNPNSPHSDHKMTRPP--RLPEEEEE------EYSSAATAPAAALKRNTSVSSSASGFQSAVKRAM

Query:  SMRRSSSVAERYCRIHDQFATLASPIDDD-------------GGSVRISKKKKKNAARKIVGACKRFFGL
        SMRRSSSVAERYCRIHDQFAT ASPI+DD             GGS    KKKKKNAA KIV ACKR FGL
Subjt:  SMRRSSSVAERYCRIHDQFATLASPIDDD-------------GGSVRISKKKKKNAARKIVGACKRFFGL

A0A2N9II75 Uncharacterized protein4.5e-1846.5Show/hide
Query:  DGYSKMKF----KSRSIDYSDLSSLPRSLSNPNSPH-SDHK--------MTRPPRLPEEEEEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRR
        +GY+K++     KS+S+D+SD S  P    N NS H S H+         T+  +  E  E+E  +  +     + R+ SVSSS SGFQSA+KRA S+RR
Subjt:  DGYSKMKF----KSRSIDYSDLSSLPRSLSNPNSPH-SDHK--------MTRPPRLPEEEEEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRR

Query:  SSSVAERYCRIHDQFATLASPIDDDG-----GSVRISKKKKKNAARKIVGACKRFFG
        SSSV+ERYCRIHDQ  TL SPIDDD         R S KK K    KI+ ACKR FG
Subjt:  SSSVAERYCRIHDQFATLASPIDDDG-----GSVRISKKKKKNAARKIVGACKRFFG

A0A5A7V402 Uncharacterized protein5.5e-3260.47Show/hide
Query:  MADGYSKM----KFKSRSIDYSDLSSLPRSL-------SNPNSPHSDHKMTRPP------RLPEEEEEEYSSAATAP-----AAALKRNTSVSSSASGFQ
        MADGYSK+    KFKSRSIDYSDLSSLP SL       SNP S HS+H  T  P      RLPEE+EE        P     AA L RN+SVSSS SGFQ
Subjt:  MADGYSKM----KFKSRSIDYSDLSSLPRSL-------SNPNSPHSDHKMTRPP------RLPEEEEEEYSSAATAP-----AAALKRNTSVSSSASGFQ

Query:  SAVKRAMSMRRSSSVAERYCRIHDQFATLASPIDDD-------------GGSVRISKKKKKNAARKIVGACK
        SAVKRA+SMRRSSSVAERYCRIHDQFAT ASPI+DD             GGS  I KKKK NAA KIV A +
Subjt:  SAVKRAMSMRRSSSVAERYCRIHDQFATLASPIDDD-------------GGSVRISKKKKKNAARKIVGACK

A0A6J1C4C9 uncharacterized protein LOC1110083711.5e-3461.4Show/hide
Query:  MADGYSKM----KFKSRSIDYSDLSSLPRSLS------NPNSPHSDHKMTRPPR------LPEEEEEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRA
        MADGYSK+    KFKSRSIDYSDL+SLP SL       NPNS   +    R  R      LPEEEE+EY        AAL RN+SVSSSASG  SAVKRA
Subjt:  MADGYSKM----KFKSRSIDYSDLSSLPRSLS------NPNSPHSDHKMTRPPR------LPEEEEEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRA

Query:  MSMRRSSSVAERYCRIHDQFATLASPIDDD-------------GGSVRISKKKKKNAARKIVGACKRFFGL
        +SMRRSSSVAERYCRIHDQFATLASPIDD+              GSVR   +KKKNAA KIV ACKR FGL
Subjt:  MSMRRSSSVAERYCRIHDQFATLASPIDDD-------------GGSVRISKKKKKNAARKIVGACKRFFGL

A0A6J1ERE9 uncharacterized protein LOC1114358634.8e-3661.93Show/hide
Query:  MADGYSKM----KFKSRSIDYSDLSSLPRS--------LSNPNSPHSDHKMT--RPPRLPEEEEE------EYSSAATAPAAALKRNTSVSSSASGFQSA
        MAD YSK+    KFKSRSIDYSDL+SLP S        +SNPNS  S+   T  +  RLPEEEEE      EY    +A AAAL RN SVSSS SGF SA
Subjt:  MADGYSKM----KFKSRSIDYSDLSSLPRS--------LSNPNSPHSDHKMT--RPPRLPEEEEE------EYSSAATAPAAALKRNTSVSSSASGFQSA

Query:  VKRAMSMRRSSSVAERYCRIHDQFATLASPIDDD-------------GGSV-RISKKKKKNAARKIVGACKRFFGL
        VKRA+SMRRSSSVAERYCRIHDQFATLASPIDDD             GGSV +  KKKKKN+A KIV ACKR FG+
Subjt:  VKRAMSMRRSSSVAERYCRIHDQFATLASPIDDD-------------GGSV-RISKKKKKNAARKIVGACKRFFGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G24275.1 Identified as a screen for stress-responsive genes.1.1e-1139.71Show/hide
Query:  YSDLSSLPRSLSNPNSPHSDHKMTRPPRLPEEEEEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRIHDQFATLASPI-----
        YS + S  + L  P+ P  D ++ +P   P E + +           L RN SVS+SA    S +K  MSMRRSSSV+ERYCRI+DQ +    P+     
Subjt:  YSDLSSLPRSLSNPNSPHSDHKMTRPPRLPEEEEEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRIHDQFATLASPI-----

Query:  ---DDDGGSVRISKKKKKNAARK--IVGACKRFFGL
           +DD    ++ KKKK N  +K   V ACKRFFG+
Subjt:  ---DDDGGSVRISKKKKKNAARK--IVGACKRFFGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGATGGGTACTCCAAAATGAAATTCAAATCAAGATCCATCGATTACTCCGATCTCTCATCGCTCCCTCGCTCCCTCTCCAATCCAAACTCTCCCCATTCCGATCA
CAAAATGACTCGTCCGCCGCGTTTGCCGGAGGAGGAGGAAGAAGAATACAGCAGCGCCGCCACCGCCCCTGCCGCCGCTCTGAAGAGGAACACCTCTGTCTCTTCATCGG
CCTCCGGATTCCAATCGGCGGTGAAGAGAGCTATGTCGATGCGGCGATCTTCGTCTGTGGCGGAGCGCTACTGTAGGATTCACGATCAGTTCGCGACGCTTGCATCGCCG
ATCGACGATGATGGAGGGTCTGTGAGGATTTCGAAGAAGAAGAAGAAGAACGCTGCCAGGAAGATCGTTGGCGCTTGTAAGCGATTTTTCGGACTGTAA
mRNA sequenceShow/hide mRNA sequence
AACACAGGGCGGCGAGAAGACAAAATAAATAAATAATAGAGATTTATTCCGCTAATTTTAGCCCATATAATATTACCAAAGTATTGGTGTATTGATTGTTTTTGGCTTCA
ATCTTCAAAAACCTCCAAAGCATTTCTCACCGTAATCTTCCCCCAATCTCCAAACAAACACCAAAACAATGGCGGATGGGTACTCCAAAATGAAATTCAAATCAAGATCC
ATCGATTACTCCGATCTCTCATCGCTCCCTCGCTCCCTCTCCAATCCAAACTCTCCCCATTCCGATCACAAAATGACTCGTCCGCCGCGTTTGCCGGAGGAGGAGGAAGA
AGAATACAGCAGCGCCGCCACCGCCCCTGCCGCCGCTCTGAAGAGGAACACCTCTGTCTCTTCATCGGCCTCCGGATTCCAATCGGCGGTGAAGAGAGCTATGTCGATGC
GGCGATCTTCGTCTGTGGCGGAGCGCTACTGTAGGATTCACGATCAGTTCGCGACGCTTGCATCGCCGATCGACGATGATGGAGGGTCTGTGAGGATTTCGAAGAAGAAG
AAGAAGAACGCTGCCAGGAAGATCGTTGGCGCTTGTAAGCGATTTTTCGGACTGTAACTTTGGAATTGATGAGAAGTTTTTTTAACTAAATGAATCCGTGAAGTATCTTT
TCATCTTTTTTATTTTGTTGCAGAGAGGTGTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
Protein sequenceShow/hide protein sequence
MADGYSKMKFKSRSIDYSDLSSLPRSLSNPNSPHSDHKMTRPPRLPEEEEEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRIHDQFATLASP
IDDDGGSVRISKKKKKNAARKIVGACKRFFGL