; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0001189 (gene) of Chayote v1 genome

Gene IDSed0001189
OrganismSechium edule (Chayote v1)
DescriptionSm domain-containing protein
Genome locationLG05:26312692..26322316
RNA-Seq ExpressionSed0001189
SyntenySed0001189
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0000956 - nuclear-transcribed mRNA catabolic process (biological process)
GO:0005688 - U6 snRNP (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0097526 - spliceosomal tri-snRNP complex (cellular component)
GO:0120115 - Lsm2-8 complex (cellular component)
GO:1990726 - Lsm1-7-Pat1 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR52224.1 hypothetical protein CICLE_v10033061mg [Citrus clementina]1.5e-4695.96Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRD+DDPLKTTDQTRQLGLIVCRGTAVMLVSP DGTDEIANPF+QPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA

XP_020229823.1 sm-like protein LSM7 [Cajanus cajan]1.5e-4695.96Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRD+DDPLKTTDQTRQLGLIVCRGTAVMLVSP DGTDEIANPF+QPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA

XP_020260133.1 sm-like protein LSM7 isoform X2 [Asparagus officinalis]1.1e-4696.97Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDSDDPLKTTDQTR+LGLIVCRGTAVMLVSP DGTDEIANPFLQPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA

XP_022934168.1 sm-like protein LSM7 [Cucurbita moschata]5.1e-4797.98Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTR+LGLIVCRGTAVMLVSPVDGTDEIANPF+QPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA

XP_022948303.1 sm-like protein LSM7 [Cucurbita moschata]6.6e-4796.97Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDSDDPLKTTDQTR+LGLIVCRGTAVMLVSPVDGTDEIANPF+QPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA

TrEMBL top hitse value%identityAlignment
A0A4Y7IP79 Sm domain-containing protein7.2e-4796.97Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDSDDPLKTTDQTR LGLIVCRGTAVMLVSP DGTDEIANPFLQPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA

A0A5P1FU12 Sm domain-containing protein5.5e-4796.97Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDSDDPLKTTDQTR+LGLIVCRGTAVMLVSP DGTDEIANPFLQPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA

A0A6J1F6X2 sm-like protein LSM72.5e-4797.98Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTR+LGLIVCRGTAVMLVSPVDGTDEIANPF+QPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA

A0A6J1G9G2 sm-like protein LSM73.2e-4796.97Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDSDDPLKTTDQTR+LGLIVCRGTAVMLVSPVDGTDEIANPF+QPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA

A0A6J1KGY2 sm-like protein LSM73.2e-4796.97Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDSDDPLKTTDQTR+LGLIVCRGTAVMLVSPVDGTDEIANPF+QPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA

SwissProt top hitse value%identityAlignment
O74499 U6 snRNA-associated Sm-like protein LSm71.4e-2353.19Show/hide
Query:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPD
        RKE++LDL+++ D+ +Q   TGGRQ+TG LKG+DQL+NLVLD+  E LR+ +D  K T   R+LGL+V RGT ++L++P+DG++EI NPF+Q +
Subjt:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPD

Q54HF6 Probable U6 snRNA-associated Sm-like protein LSm75.1e-2657.78Show/hide
Query:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPF
        +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+  EF+RD++DPL TTD+ R LGL+VCRG++VM+V P +G + I NP+
Subjt:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPF

Q9CQQ8 U6 snRNA-associated Sm-like protein LSm71.6e-2757.61Show/hide
Query:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQ
        +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RD DD  K T+ TRQLGL+VCRGT+V+L+ P DG + I NPF+Q
Subjt:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQ

Q9SI54 Sm-like protein LSM71.4e-4492.55Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFL
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKTTDQTR+LGLIVCRGTAVMLVSP DGT+EIANPF+
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFL

Q9UK45 U6 snRNA-associated Sm-like protein LSm73.2e-2857.29Show/hide
Query:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA
        +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  IE++RD DD  K T+ TRQLGL+VCRGT+V+L+ P DG + I NPF+Q   A
Subjt:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA

Arabidopsis top hitse value%identityAlignment
AT2G03870.1 Small nuclear ribonucleoprotein family protein1.0e-4592.55Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFL
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKTTDQTR+LGLIVCRGTAVMLVSP DGT+EIANPF+
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFL

AT2G03870.2 Small nuclear ribonucleoprotein family protein1.0e-4592.55Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFL
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKTTDQTR+LGLIVCRGTAVMLVSP DGT+EIANPF+
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFL

AT2G23930.1 probable small nuclear ribonucleoprotein G5.3e-1038.67Show/hide
Query:  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVD
        DL K++DK +Q+KL   R VTGTL+G+DQ +NLV+D  +E        +   D+T  +G++V RG +++ V  ++
Subjt:  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVD

AT2G23930.2 probable small nuclear ribonucleoprotein G6.5e-0837.14Show/hide
Query:  VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVD
        +DK +Q+KL   R VTGTL+G+DQ +NLV+D  +E        +   D+T  +G++V RG +++ V  ++
Subjt:  VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVD

AT3G11500.1 Small nuclear ribonucleoprotein family protein1.2e-0936Show/hide
Query:  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVD
        DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  +E            D    +G++V RG +++ V  ++
Subjt:  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGAAGAAAAGAAACTGTTTTGGATTTGGCTAAGTTTGTTGACAAAGGCGTTCAAGTTAAGCTTACCGGCGGCAGACAAGTTACGGGAACGCTCAAAGGATATGA
TCAATTGCTGAACCTTGTGCTGGATGAAGCTATAGAGTTCTTAAGAGATTCTGATGACCCATTGAAGACAACAGATCAAACCAGGCAGCTTGGCCTAATTGTTTGCAGGG
GGACGGCTGTAATGCTTGTGTCGCCCGTTGATGGGACAGACGAAATTGCTAACCCCTTTCTCCAACCGGATGGGGCATAA
mRNA sequenceShow/hide mRNA sequence
AAATTTCGGGCCGGAATAGAAATTGGGCCGAAGGTACCTTTCCCGCCATCAAGCATTTCTCTCAACGAGCAAATCTAGGGCACATTATTCCCTTCATCACCATTTCCATT
GAAAATACGTAATGCTCTAACGCCGCCGAGTTTGTTTGAATCGACTAGCAGCCGGAACTTTTCTTTTCGCTCGTTGTAATTTTCAAATTTCTTGGATGTTTCAGGTTTCT
GTTCGTTTAATTTCACAGAGAAGCTGAGAAAACGCGGTTGCGATGTCTGGAAGAAAAGAAACTGTTTTGGATTTGGCTAAGTTTGTTGACAAAGGCGTTCAAGTTAAGCT
TACCGGCGGCAGACAAGTTACGGGAACGCTCAAAGGATATGATCAATTGCTGAACCTTGTGCTGGATGAAGCTATAGAGTTCTTAAGAGATTCTGATGACCCATTGAAGA
CAACAGATCAAACCAGGCAGCTTGGCCTAATTGTTTGCAGGGGGACGGCTGTAATGCTTGTGTCGCCCGTTGATGGGACAGACGAAATTGCTAACCCCTTTCTCCAACCG
GATGGGGCATAAATCTGTTGCCTGATACTGACAAAGAACTGTTGGATTCTGCTTGTTTGGCCGACAAAGCATTCCTTTTGTTGATAGCCCAACTTGTTCTCTTTCGGCAC
ATGTGAGTGAGCTGCGACTGCAACTTTGTGCCGGTAAGCTTTTCTAGACTCTTCAAATAATTTAGGATCAAATTATATACTTTAGAGAAATATGGTATTTGGGCAATTTA
GTCTATGATTTGATAAAATAAAGTTTAAGTATGTAAACTATTCATGTGTTAGTGATGTTATTTTGTTTAATCAGTCTTAATTTATACCGCCCTCATAAATACATGAATAA
TTAACTTTCACTTATTTAACTCGC
Protein sequenceShow/hide protein sequence
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRQLGLIVCRGTAVMLVSPVDGTDEIANPFLQPDGA