CuGenDBv2

Gene ID	Sed0001194
Organism	Sechium edule (Chayote v1)
Description	Transcription initiation factor IIF subunit beta
Genome location	LG11:25988874..25996306
RNA-Seq Expression	Sed0001194
Synteny	Sed0001194
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0006413 - translational initiation (biological process) GO:0005674 - transcription factor TFIIF complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003743 - translation initiation factor activity (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	IPR003196 - Transcription initiation factor IIF, beta subunit IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily IPR040450 - TFIIF beta subunit, HTH domain IPR040504 - TFIIF, beta subunit, N-terminal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152667.1 transcription initiation factor IIF subunit beta [Cucumis sativus]

5.5e-133

92.42

Show/hide

Query:  MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV
        MEDE+    G GGSS NLDTGKADRSVWLMKCPL+VAKSW++HPPS  LPLAKVILSLDPLQSD+SS+LQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV
Subjt:  MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV

Query:  FSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELED
        FSEASQG VSMEGKVEHKFDMKPHSEN+EMYGKLCRERTNKSMVKNRQIQVIDND G+HMRPMPGMVGLISSTS+EKKKVAPVKQSDVKRTRRDRGELED
Subjt:  FSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELED

Query:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

XP_008444765.1 PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis melo]

1.5e-133

92.42

Show/hide

Query:  MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV
        MED++    G GGSS NLDTGKADRSVWLMKCPL+VAKSW++HPPS PLPLAKVILSLDPLQSD+SS+LQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV
Subjt:  MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV

Query:  FSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELED
        FSEASQG VSMEGKVEHKFDMKPHSEN+EMYGKLCRERTNKSMVKNRQIQVIDND G+HMRPMPGMVGLISSTS+EKKKVAPVKQSDVKRTRRDRGELED
Subjt:  FSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELED

Query:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

XP_022144312.1 transcription initiation factor IIF subunit beta [Momordica charantia]

1.5e-133

92.8

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Query:  MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV
        MEDE+    GGGGSS NLDTGKADRSVWLMKCPL+VAKSW+SHPPS  LPLAKVILSLDPLQSD+SS+LQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV
Subjt:  MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV

Query:  FSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELED
        FSEASQG +SMEGKVEHKFDMKPH EN+EMYGKLCRERTNKSMVKNRQIQVIDND G+HMRPMPGMVGLISSTS+EKKKVAPVKQSDVKRTRRDRGELED
Subjt:  FSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELED

Query:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
Subjt:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

XP_023002475.1 transcription initiation factor IIF subunit beta [Cucurbita maxima]

7.2e-133

91.67

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Query:  MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV
        MEDEN     GGGSS NLDTGKADRSVWLMKCPL+VAKSW+SHPPS PLPLAKVILSLDPLQSD+SS+LQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV
Subjt:  MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV

Query:  FSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELED
        FSEASQG +SMEGKVEHKFDMKPHSEN+EMYGKLCRERTNKSMVKNRQIQVIDND G+HMRPMPGMVGLISSTS++K+KVAPVKQ +VKRTRRDRGELED
Subjt:  FSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELED

Query:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

XP_038884084.1 transcription initiation factor IIF subunit beta-like [Benincasa hispida]

2.9e-134

92.8

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Query:  MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV
        MEDEN     GGGSS NLDTGKADRSVWLMKCPL+VAKSW++HPPS PLPLAKVILSLDPLQSD+SS+LQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV
Subjt:  MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV

Query:  FSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELED
        FSEASQG +SMEGKVEHKFDMKPHSEN+EMYGKLCRERTNKSMVKNRQIQVIDND G+HMRPMPGMVGLISSTS+EKKKVAPVKQSDVKRTRRDRGELED
Subjt:  FSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELED

Query:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRL0 Transcription initiation factor IIF subunit beta

2.7e-133

92.42

Show/hide

Query:  MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV
        MEDE+    G GGSS NLDTGKADRSVWLMKCPL+VAKSW++HPPS  LPLAKVILSLDPLQSD+SS+LQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV
Subjt:  MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV

Query:  FSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELED
        FSEASQG VSMEGKVEHKFDMKPHSEN+EMYGKLCRERTNKSMVKNRQIQVIDND G+HMRPMPGMVGLISSTS+EKKKVAPVKQSDVKRTRRDRGELED
Subjt:  FSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELED

Query:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

A0A1S3BBV5 Transcription initiation factor IIF subunit beta

7.1e-134

92.42

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Query:  MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV
        MED++    G GGSS NLDTGKADRSVWLMKCPL+VAKSW++HPPS PLPLAKVILSLDPLQSD+SS+LQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV
Subjt:  MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV

Query:  FSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELED
        FSEASQG VSMEGKVEHKFDMKPHSEN+EMYGKLCRERTNKSMVKNRQIQVIDND G+HMRPMPGMVGLISSTS+EKKKVAPVKQSDVKRTRRDRGELED
Subjt:  FSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELED

Query:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

A0A5A7VAJ9 Transcription initiation factor IIF subunit beta

7.1e-134

92.42

Show/hide

Query:  MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV
        MED++    G GGSS NLDTGKADRSVWLMKCPL+VAKSW++HPPS PLPLAKVILSLDPLQSD+SS+LQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV
Subjt:  MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV

Query:  FSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELED
        FSEASQG VSMEGKVEHKFDMKPHSEN+EMYGKLCRERTNKSMVKNRQIQVIDND G+HMRPMPGMVGLISSTS+EKKKVAPVKQSDVKRTRRDRGELED
Subjt:  FSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELED

Query:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

A0A6J1CTB7 Transcription initiation factor IIF subunit beta

7.1e-134

92.8

Show/hide

Query:  MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV
        MEDE+    GGGGSS NLDTGKADRSVWLMKCPL+VAKSW+SHPPS  LPLAKVILSLDPLQSD+SS+LQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV
Subjt:  MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV

Query:  FSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELED
        FSEASQG +SMEGKVEHKFDMKPH EN+EMYGKLCRERTNKSMVKNRQIQVIDND G+HMRPMPGMVGLISSTS+EKKKVAPVKQSDVKRTRRDRGELED
Subjt:  FSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELED

Query:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
Subjt:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

A0A6J1KP21 Transcription initiation factor IIF subunit beta

3.5e-133

91.67

Show/hide

Query:  MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV
        MEDEN     GGGSS NLDTGKADRSVWLMKCPL+VAKSW+SHPPS PLPLAKVILSLDPLQSD+SS+LQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV
Subjt:  MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCV

Query:  FSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELED
        FSEASQG +SMEGKVEHKFDMKPHSEN+EMYGKLCRERTNKSMVKNRQIQVIDND G+HMRPMPGMVGLISSTS++K+KVAPVKQ +VKRTRRDRGELED
Subjt:  FSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELED

Query:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

SwissProt top hits

e value

%identity

Alignment

O94424 Transcription initiation factor IIF subunit beta

1.3e-20

30.86

Show/hide

Query:  SGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFV-PMCVFSE----ASQGTV
        +G+LD G+    VWL+K P  +   W S P      L  V +  D +Q          +     E  +VPK ++L +   FV    VF E    +S  + 
Subjt:  SGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFV-PMCVFSE----ASQGTV

Query:  SMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLIS-STSREKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER
        ++ G V H+ ++ P     + Y ++ ++R   +    R++Q+ID+  G  +   PG +G  S ST+   + V P     +K +R  R EL DI+FK FE 
Subjt:  SMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLIS-STSREKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER

Query:  QPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
           W LK L +   QP  +LKE+L+ + + NKRG     Y LKPEYK +++    E
Subjt:  QPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

P41900 General transcription factor IIF subunit 2

2.0e-16

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Query:  NLDTGKADRSVWLMKCPLVVAKSWRSHPPS-----------------VPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVP--
        +LD   A R VWL+K P  +A+ W   P +                 V L L   +L+LDP +   +  +         +   V K  +L +F    P  
Subjt:  NLDTGKADRSVWLMKCPLVVAKSWRSHPPS-----------------VPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVP--

Query:  -----MCVFSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTR
                 ++     + MEG++  K + +P ++N   Y KL  E   K+    R++Q ID     + +P+      I    RE+KK      ++ K+ R
Subjt:  -----MCVFSEASQGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTR

Query:  RDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
         D+  + D++F  FE+   + +K LV+ T+QP  +LKEIL ++C YN +  ++  +ELK EY+
Subjt:  RDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Q01750 General transcription factor IIF subunit 2

4.9e-15

29.6

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Query:  GNLD-TG-KADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEAS
        G LD TG K +  VWL+K P  +++ W   P    +   ++  +    Q     +     ++A   + G  P S S      FV        + VF+E+S
Subjt:  GNLD-TG-KADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEAS

Query:  QGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELEDIMFKL
           +S+EG V  + + +P +   E Y KL R +  +S    R  Q  D     + +P+        +   E+K     K+ D KR R D+  + D++F  
Subjt:  QGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELEDIMFKL

Query:  FERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
        FE+   + LK LV  T QP  +LKEIL E+ + N +G ++ T+ELKPEY+
Subjt:  FERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Q2T9L9 General transcription factor IIF subunit 2

6.4e-15

29.69

Show/hide

Query:  GNLD-TG-KADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEAS
        G LD TG K +  VWL+K P  +++ W   P    +   ++  +    Q     +     ++A   + G  P S S      FV        + VF+E+S
Subjt:  GNLD-TG-KADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEAS

Query:  QGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELEDIMFKL
           +S+EG V  + + +P +   E Y +L R +  +S    R  Q +D     + +P+        +   E+K     K+ D KR R D+  + D++F  
Subjt:  QGTVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELEDIMFKL

Query:  FERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK-SVEE
        FE+   + LK LV  T QP  +LK+IL E+ V N +G ++ T+ELKPEY+   VEE
Subjt:  FERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK-SVEE

Q54KT7 General transcription factor IIF subunit 2

8.9e-17

27.5

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Query:  GNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGTVSMEGKV
        G ++T  AD  VWL+K P  +++SW+         + +  +    ++  D+ +L +     G + G   +  +     D  P+ +FSE   G +++EG +
Subjt:  GNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGTVSMEGKV

Query:  EHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALK
          + D+K   E+ + Y  L + R  K   K R  QVID                +S+    +K     K+S  K+ +    E+ D++F  F  + +  LK
Subjt:  EHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALK

Query:  QLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
         L   T+QP   LK IL ++C+ NKRG     YELKPE++
Subjt:  QLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Arabidopsis top hits

e value

%identity

Alignment

AT1G75510.1 Transcription initiation factor IIF, beta subunit

3.7e-95

67.44

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Query:  NLDTGKADRSVWLMKCPLVVAKSWRSHPPS---------VPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQG
        NLD  K+DRS+WLMKCP+VV K+W     S          P  +AK++  +DPL+  D S  +FKM M G E GN+PK ++LNMF DFVPM  FS+ +QG
Subjt:  NLDTGKADRSVWLMKCPLVVAKSWRSHPPS---------VPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQG

Query:  TVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELEDIMFKLFE
          + EGKV+HKFDMKP+ E +E Y +LCRERT+K+MVKNRQIQVIDND G+HMRPMPGM+GL+SS S+EK+K  PVKQ++VKRTRRDRGELE IMFKLFE
Subjt:  TVSMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELEDIMFKLFE

Query:  RQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE-ETGGE
         QPNW LKQLVQETDQPAQFLKEILNELCVYNKRG+NQGTYELKPEYKKS E +TGG+
Subjt:  RQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE-ETGGE

AT3G52270.1 Transcription initiation factor IIF, beta subunit

9.3e-78

58.17

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Query:  LDTGKADRSVWLMKCPLVVAKSWRSH--------PPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGTV
        L+TG A+RS+ LMK P +VA S +SH        P     P AKVIL +DPL  +D    QF ME+A  ++GN+P+ ++L+M KDF+PM VF E+S G +
Subjt:  LDTGKADRSVWLMKCPLVVAKSWRSH--------PPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGTV

Query:  SMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQ
        S+EGK+++KFDM+PH+EN+E YG+LCRERTNK M KNRQIQVIDN  GMHMRPMPGM+  I + + EKKK+   + S++KRTRRDR E+E++MF LFERQ
Subjt:  SMEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQ

Query:  PNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEE
         NW L+ L+QETDQP QFLK++L +LC+YN +G+NQGTYELKPEYKK+ +E
Subjt:  PNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEE

Sequences

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CDS sequence

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ATGGAAGACGAGAACGGCGGCGGCGGCGGCGGCGGGGGCAGTAGCGGTAACTTGGATACGGGGAAGGCGGATAGATCAGTGTGGCTGATGAAGTGCCCGTTGGTGGTCGC
GAAGTCATGGCGGTCTCATCCTCCATCGGTTCCTCTTCCTCTCGCTAAGGTCATCCTCTCTCTCGATCCTCTCCAATCCGACGACTCCTCTGCTCTTCAGTTCAAGATGG
AGATGGCTGGAACTGAGACTGGAAATGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGCGTCTTTTCAGAGGCAAGCCAAGGTACGGTGTCA
ATGGAAGGGAAGGTGGAACATAAATTCGATATGAAGCCTCATAGTGAAAATATGGAAATGTATGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTGAAGAATAG
ACAAATTCAAGTGATAGACAATGACAGTGGAATGCATATGAGGCCAATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAGGGAAAAGAAGAAGGTGGCGCCAGTTA
AACAATCAGATGTGAAAAGAACGAGAAGGGATCGCGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGGCAGCCGAATTGGGCCCTAAAGCAGCTAGTCCAAGAG
ACTGATCAACCTGCACAATTCTTGAAAGAGATACTGAATGAGCTTTGTGTCTACAACAAAAGAGGGACCAATCAAGGAACGTATGAGCTTAAGCCCGAATACAAGAAATC
TGTCGAAGAAACCGGCGGAGAGTAG

mRNA sequence

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CGACTCCATAGCATAATACCTCCGTCAACCACGTCTTCCTACTTAGGGTCAAGTCCCGTTCCGTACGGACTTTTACGCCGCCGTCGCAGAAATCTCGCCGGCGAAAGTTC
GGACAAGAGAGAGATTCTGTAAGCTGATTGAGATGGAAGACGAGAACGGCGGCGGCGGCGGCGGCGGGGGCAGTAGCGGTAACTTGGATACGGGGAAGGCGGATAGATCA
GTGTGGCTGATGAAGTGCCCGTTGGTGGTCGCGAAGTCATGGCGGTCTCATCCTCCATCGGTTCCTCTTCCTCTCGCTAAGGTCATCCTCTCTCTCGATCCTCTCCAATC
CGACGACTCCTCTGCTCTTCAGTTCAAGATGGAGATGGCTGGAACTGAGACTGGAAATGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGCG
TCTTTTCAGAGGCAAGCCAAGGTACGGTGTCAATGGAAGGGAAGGTGGAACATAAATTCGATATGAAGCCTCATAGTGAAAATATGGAAATGTATGGGAAATTGTGCCGT
GAAAGGACAAACAAGTCCATGGTGAAGAATAGACAAATTCAAGTGATAGACAATGACAGTGGAATGCATATGAGGCCAATGCCTGGCATGGTTGGTTTGATCAGTTCAAC
TTCAAGGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGATGTGAAAAGAACGAGAAGGGATCGCGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGGCAGC
CGAATTGGGCCCTAAAGCAGCTAGTCCAAGAGACTGATCAACCTGCACAATTCTTGAAAGAGATACTGAATGAGCTTTGTGTCTACAACAAAAGAGGGACCAATCAAGGA
ACGTATGAGCTTAAGCCCGAATACAAGAAATCTGTCGAAGAAACCGGCGGAGAGTAGGTTAGTTTTTTACTGTATCATTATACATATTCCCTTCTCTTTGGGGCTGGTGG
AAACGATCTGAAATAAATGTGTTAAAAAGGAAAAAAAAAGGATTTTGCCTTTGTTATATTTTCATGCATGAGATGGAAAGATGGGAGGCTGTAAAGGATGATTGTTGAAA
ATAATTGTTAGGTAGATTTATGCTAAAGTGAAACCAAAGGTGATATGAAAGGTGGGGGAAGTTCTTATGTCATGGTTATCCAATTATTATGTACAAACTCGGAAGTTAAA
AAGTGTAACATGTATAATGAATTTTATAAAACAGCGAAGATGTTGGGAAACAGAGTCCATAAATTGGATGTTCATTGACTTTTAATTTTCTTTTGGCAACGCAATTGTTT
TTGTG

Protein sequence

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MEDENGGGGGGGGSSGNLDTGKADRSVWLMKCPLVVAKSWRSHPPSVPLPLAKVILSLDPLQSDDSSALQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGTVS
MEGKVEHKFDMKPHSENMEMYGKLCRERTNKSMVKNRQIQVIDNDSGMHMRPMPGMVGLISSTSREKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQE
TDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

Sed0001194 (gene) of Chayote v1 genome