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Sed0001253 (gene) of Chayote v1 genome

Gene IDSed0001253
OrganismSechium edule (Chayote v1)
DescriptionReplication protein A 14 kDa subunit B
Genome locationLG02:42759467..42759760
RNA-Seq ExpressionSed0001253
SyntenySed0001253
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043875.1 replication protein A 14 kDa subunit B [Cucumis melo var. makuwa]8.9e-3279.38Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNGII-----------VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFGMPSSSSIFILE
        MDTSNPSVFVNAELLRLYVGRRVRA IQV SEGNG+I           VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFGM SSS +  L+
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNGII-----------VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFGMPSSSSIFILE

KAG7028115.1 Replication protein A 14 kDa subunit B [Cucurbita argyrosperma subsp. argyrosperma]6.4e-3084.71Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNG-----------IIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF
        MDTSNPSVFVNAELLRLYVGRRVRA IQVQSEGNG           I+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNG-----------IIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF

TYK25262.1 replication protein A 14 kDa subunit B [Cucumis melo var. makuwa]8.9e-3279.38Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNGII-----------VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFGMPSSSSIFILE
        MDTSNPSVFVNAELLRLYVGRRVRA IQV SEGNG+I           VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFGM SSS +  L+
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNGII-----------VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFGMPSSSSIFILE

XP_022943091.1 replication protein A 14 kDa subunit B-like [Cucurbita moschata]6.4e-3084.71Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNG-----------IIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF
        MDTSNPSVFVNAELLRLYVGRRVRA IQVQSEGNG           I+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNG-----------IIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF

XP_023540224.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]6.4e-3084.71Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNG-----------IIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF
        MDTSNPSVFVNAELLRLYVGRRVRA IQVQSEGNG           I+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNG-----------IIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF

TrEMBL top hitse value%identityAlignment
A0A1S3B7E2 replication protein A 14 kDa subunit B2.0e-2983.53Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNGII-----------VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF
        MDTSNPSVFVNAELLRLYVGRRVRA IQV SEGNG+I           VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNGII-----------VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF

A0A5A7TR56 Replication protein A 14 kDa subunit B4.3e-3279.38Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNGII-----------VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFGMPSSSSIFILE
        MDTSNPSVFVNAELLRLYVGRRVRA IQV SEGNG+I           VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFGM SSS +  L+
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNGII-----------VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFGMPSSSSIFILE

A0A5D3DP16 Replication protein A 14 kDa subunit B4.3e-3279.38Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNGII-----------VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFGMPSSSSIFILE
        MDTSNPSVFVNAELLRLYVGRRVRA IQV SEGNG+I           VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFGM SSS +  L+
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNGII-----------VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFGMPSSSSIFILE

A0A6J1FQS1 replication protein A 14 kDa subunit B-like3.1e-3084.71Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNG-----------IIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF
        MDTSNPSVFVNAELLRLYVGRRVRA IQVQSEGNG           I+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNG-----------IIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF

A0A6J1L034 replication protein A 14 kDa subunit B-like3.1e-3084.71Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNG-----------IIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF
        MDTSNPSVFVNAELLRLYVGRRVRA IQVQSEGNG           I+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNG-----------IIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B2.4e-1950.54Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAAIQV-----------QSEGNGIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFGMPSSSSI
        MDTS+P+ FVN  LLR Y+G++VRA IQV            ++   I+VKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSF + + + +
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAAIQV-----------QSEGNGIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFGMPSSSSI

Q9LXK1 Replication protein A 14 kDa subunit A3.2e-1650Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNG-----------IIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF
        MDTS+PS FVN  LLR ++G++VR  IQV     G           I+V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++F
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNG-----------IIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF

Q9SDK9 Replication protein A 14 kDa subunit2.7e-1544.71Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNGII-----------VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF
        MDTS P+ FVN E+L+++VGRRVR  +Q Q E  G++           +KG+   P+S +VE+IGIA+ +++IRA+V T+FG++F
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNGII-----------VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein2.3e-1750Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNG-----------IIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF
        MDTS+PS FVN  LLR ++G++VR  IQV     G           I+V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++F
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNG-----------IIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein2.3e-1750Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNG-----------IIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF
        MDTS+PS FVN  LLR ++G++VR  IQV     G           I+V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++F
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNG-----------IIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein1.7e-2050.54Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAAIQV-----------QSEGNGIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFGMPSSSSI
        MDTS+P+ FVN  LLR Y+G++VRA IQV            ++   I+VKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSF + + + +
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAAIQV-----------QSEGNGIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFGMPSSSSI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACATCAAATCCATCAGTTTTTGTCAATGCTGAGCTTTTACGTCTATATGTTGGAAGAAGAGTTCGAGCAGCGATTCAGGTGCAGTCTGAAGGCAACGGAATTAT
TGTGAAAGGCTCCCCACCCTTTCCTCTTTCGAAGTTTGTTGAGGTCATTGGCATTGCGGATACCGACAAATCGATACGAGCTGACGTTTGGACCAATTTTGGCGACTCAT
TCGGTATGCCCTCTTCTTCATCTATTTTTATTCTAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATACATCAAATCCATCAGTTTTTGTCAATGCTGAGCTTTTACGTCTATATGTTGGAAGAAGAGTTCGAGCAGCGATTCAGGTGCAGTCTGAAGGCAACGGAATTAT
TGTGAAAGGCTCCCCACCCTTTCCTCTTTCGAAGTTTGTTGAGGTCATTGGCATTGCGGATACCGACAAATCGATACGAGCTGACGTTTGGACCAATTTTGGCGACTCAT
TCGGTATGCCCTCTTCTTCATCTATTTTTATTCTAGAATGA
Protein sequenceShow/hide protein sequence
MDTSNPSVFVNAELLRLYVGRRVRAAIQVQSEGNGIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFGMPSSSSIFILE