CuGenDBv2

Gene ID	Sed0001268
Organism	Sechium edule (Chayote v1)
Description	primase homolog protein-like isoform X1
Genome location	LG01:14180972..14193815
RNA-Seq Expression	Sed0001268
Synteny	Sed0001268
Gene Ontology terms	GO:0032508 - DNA duplex unwinding (biological process) GO:0003697 - single-stranded DNA binding (molecular function) GO:0043139 - 5'-3' DNA helicase activity (molecular function)
InterPro domains	IPR006171 - TOPRIM domain IPR027032 - Twinkle-like protein IPR034154 - Archaeal primase DnaG/twinkle, TOPRIM domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022142548.1 primase homolog protein isoform X1 [Momordica charantia]

2.7e-163

76.86

Show/hide

Query:  CSPLHQTPHCSPNLQI-------QMPINTLFNFNINHRFALLSNPLNNFSFSSHS-LRFRTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGIVCDEHCTP
        CSPL Q P     LQI       QMPIN  F    NHR A L +PLN FSFSS   LRF +TR  SA SHAPPPPSPPPVKVL EKM LIGI CDE+CTP
Subjt:  CSPLHQTPHCSPNLQI-------QMPINTLFNFNINHRFALLSNPLNNFSFSSHS-LRFRTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGIVCDEHCTP

Query:  GKYYCLFCPKCKGGRLMERSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNA
        GKYYCLFCPKCKGG L ERSLSLHV+PTG+FAMWRC+ SECGWAGRIFADGRLAFN L RTVKL GR+AKES VLEPLGDELI YFSKRMI QETLERN 
Subjt:  GKYYCLFCPKCKGGRLMERSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNA

Query:  VMQIVGRQAAIAFTYRQNGQLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAV-PSIEKDTA
        VMQI GRQ  IAFTYRQNGQL+GCKYRT++KRFWQEKGTEKLLYG DDINDA+E+IIVEGEMDKLSVEEAGF NCISVPGGAP KVSTD+V PSIEKDTA
Subjt:  VMQIVGRQAAIAFTYRQNGQLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAV-PSIEKDTA

Query:  YQYLWRCRDYLDKVSRIILATDSDEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANE-LCRRGPQTL---ITIGNNFEQSKTNR
        YQYLW C+DYLDKVS IILATDSDEPG+ALAEELARRLGKHRCWRVDWPYKD+ NRFKDANE L   GP  L   +    ++E S  N+
Subjt:  YQYLWRCRDYLDKVSRIILATDSDEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANE-LCRRGPQTL---ITIGNNFEQSKTNR

XP_022955059.1 primase homolog protein-like isoform X1 [Cucurbita moschata]

1.8e-164

77.69

Show/hide

Query:  QIQMPINTLFNFNINHRFALLSNPLNNFSFSSHSLRFRTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGIVCDEHCTPGKYYCLFCPKCKGGRLMERSLS
        +IQMP+ T FNFN NHR A+ S+PLNNFSFSS SL    TR   A+S  PP PSPPPVKVL EKM LIGIVCDE CTPGKYYCL CPKCKGGRLMERSLS
Subjt:  QIQMPINTLFNFNINHRFALLSNPLNNFSFSSHSLRFRTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGIVCDEHCTPGKYYCLFCPKCKGGRLMERSLS

Query:  LHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQIVGRQAAIAFTYRQNGQLV
        LHVIPTG+FAMWRCFQSECGWAGRIFADGRLAFNE +RT KLFG TAK+S +LEPLGDELI+YFSKRMISQETL+RN VMQ   RQAAIAFTYRQNGQLV
Subjt:  LHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQIVGRQAAIAFTYRQNGQLV

Query:  GCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKVSRIILATDS
        GCKYRTI K+FWQ KGTEKL YG DDINDA+ELIIVEGEMDKLSVEEAGF NCISVPGGAP KVST+AV SI+KDTAYQYLW C+D LDKV RIILATDS
Subjt:  GCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKVSRIILATDS

Query:  DEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANE-LCRRGPQTLITIGNNFEQSKTNRSCEVHERDV
        DEPG+ALAEELA RLGKHRCWRVDWPYKD+ NRFKDANE L + G   L       E +K+ + C+  E  V
Subjt:  DEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANE-LCRRGPQTLITIGNNFEQSKTNRSCEVHERDV

XP_022994814.1 primase homolog protein isoform X1 [Cucurbita maxima]

4.5e-163

81.69

Show/hide

Query:  QIQMPINTLFNFNINHRFALLSNPLNNFSFSSHSLRFRTTRSFSAVSHAPPPPSP----PPVKVLTEKMGLIGIVCDEHCTPGKYYCLFCPKCKGGRLME
        +IQMP+ T FNFN NHR A+ S+PLNNFSFSS SL    TR   A+S  PP PSP    PPVKVL EKM LIGIVCDE CTPGKYYCL CPKCKGGRLME
Subjt:  QIQMPINTLFNFNINHRFALLSNPLNNFSFSSHSLRFRTTRSFSAVSHAPPPPSP----PPVKVLTEKMGLIGIVCDEHCTPGKYYCLFCPKCKGGRLME

Query:  RSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQIVGRQAAIAFTYRQN
        RSLSLHVIPTG+FAMWRCFQSECGWAGRIFADGRLAFNE +RT KLFG T K+S +LEPLGDELI+YFSKRMISQETL+RN VMQ  GRQAAIAFTYRQN
Subjt:  RSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQIVGRQAAIAFTYRQN

Query:  GQLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKVSRIIL
        GQLVGCKYRTI K+FWQ KGTEKL YG DDINDA+ELIIVEGEMDKLSVEEAGF NCISVPGGAPNKVST+AV SI+KDTAYQYLW C+D LDKV R+IL
Subjt:  GQLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKVSRIIL

Query:  ATDSDEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANEL
        ATDSDEPG+ALAEELA RLGKHRCWRVDWPYKD+ NRFKDANE+
Subjt:  ATDSDEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANEL

XP_023541322.1 primase homolog protein-like [Cucurbita pepo subsp. pepo]

1.4e-164

77.39

Show/hide

Query:  QIQMPINTLFNFNINHRFALLSNPLNNFSFSSHSLRFRTTRSFSAVSHAP----PPPSPPPVKVLTEKMGLIGIVCDEHCTPGKYYCLFCPKCKGGRLME
        +IQMP+ T FNFNINHR AL S+PLNNFSFSS SL    TR   A+S  P    P PSPPPVKVL EKM LIGIVCDEHCTPGKYYCL CPKCKGGRLME
Subjt:  QIQMPINTLFNFNINHRFALLSNPLNNFSFSSHSLRFRTTRSFSAVSHAP----PPPSPPPVKVLTEKMGLIGIVCDEHCTPGKYYCLFCPKCKGGRLME

Query:  RSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQIVGRQAAIAFTYRQN
        RSLSLHVIPTG+FAMWRCFQSECGWAGRIFADGRLAFNE +RT KLFG T K+S +LEPLGDELI+YFSKRMISQETL+RN VMQ   RQAAIAFTYRQN
Subjt:  RSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQIVGRQAAIAFTYRQN

Query:  GQLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKVSRIIL
        GQLVGCKYRTI K+FWQ KGTEKL YG DDINDA+ELIIVEGEMDKLSVEEAGF NCISVPGGAP KVST+AV SI+KDTAYQYLW C+D LDKV RIIL
Subjt:  GQLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKVSRIIL

Query:  ATDSDEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANE-LCRRGPQTLITIGNNFEQSKTNRSCEVHERDV
        ATDSDEPG+ALAEELA RLGKHRCWRVDWPYKD+ NRFKDANE L + G   L       E +K+ + C+ H+  V
Subjt:  ATDSDEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANE-LCRRGPQTLITIGNNFEQSKTNRSCEVHERDV

XP_038893950.1 primase homolog protein isoform X1 [Benincasa hispida]

2.9e-162

80.45

Show/hide

Query:  SPNLQIQMPINTLFNFNINHRFALLSNPLNNFSF-----SSHSLRFRTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGIVCDEHCTPGKYYCLFCPKCKG
        S N    + +N  FN N NHR    S+P N+FSF      S  LRF TTR  SAVSH   PPSPPPVKVL EKM LIGIVCDEHCTPGKYYCLFCPKCKG
Subjt:  SPNLQIQMPINTLFNFNINHRFALLSNPLNNFSF-----SSHSLRFRTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGIVCDEHCTPGKYYCLFCPKCKG

Query:  GRLMERSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQIVGRQAAIAF
        GR +ERSLSLHVIPTG+FAMWRCFQSECGWAGRIFADGRLAFN  +RTVK  GR+A+ES VLEPLGDELISYF+KRMISQETLERN VMQI GRQ AIAF
Subjt:  GRLMERSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQIVGRQAAIAF

Query:  TYRQNGQLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKV
        TYRQNGQLVGCKYRT++KRFWQEKGTEKLLYG DDINDA ELIIVEGEMDKLSVEEAG  NCISVPGGAP+KVSTD VPS EKDTAYQYLW C+DYLDKV
Subjt:  TYRQNGQLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKV

Query:  SRIILATDSDEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANE-LCRRGPQTL
        SRIILATDSDEPG+ALAEELARRLGKHRCWRVDWPYKD+ NRFKDANE L   GP  L
Subjt:  SRIILATDSDEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANE-LCRRGPQTL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BDI8 primase homolog protein isoform X2

8.1e-158

78.77

Show/hide

Query:  MPINTLF----NFNINHRFALLSNP----LNNFSFSSHS----LRFRTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGIVCDEHCTPGKYYCLFCPKCKG
        MPIN+ F    NFN N +F   S+P    LNNFS SS      LRF TTR  SA+SHA  PP PPPVKVL EKM LIGIVCDEHC PGKYYCLFCPKCKG
Subjt:  MPINTLF----NFNINHRFALLSNP----LNNFSFSSHS----LRFRTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGIVCDEHCTPGKYYCLFCPKCKG

Query:  GRLMERSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQIVGRQAAIAF
        GRLMERSLSLHVIPTG+FAMWRCF+ ECGWAGRIFADGRLAFN  ++T K+ GR++KES VLEPL DELISYFS RMISQETLERN VMQ+VGRQ AIAF
Subjt:  GRLMERSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQIVGRQAAIAF

Query:  TYRQNGQLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKV
        TYRQNGQLVGCKYRT++KRFWQEKGT K LYG DDINDA+ELIIVEGEMDKLSVEEAGF NCISVPGGAP+KVSTD +P IEKD+AYQYLW C+DYLDKV
Subjt:  TYRQNGQLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKV

Query:  SRIILATDSDEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANE-LCRRGPQTL
        SRIILATDSD PG+ALAEELARRLGKHRCWRVDWPYKD  NRFKDANE L   GP  L
Subjt:  SRIILATDSDEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANE-LCRRGPQTL

A0A1S4DTX2 primase homolog protein isoform X1

2.0e-156

78.55

Show/hide

Query:  MPINTLF----NFNINHRFALLSNP----LNNFSFSSHS----LRFRTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGIVCDEHCTPGKYYCLFCPKCKG
        MPIN+ F    NFN N +F   S+P    LNNFS SS      LRF TTR  SA+SHA  PP PPPVKVL EKM LIGIVCDEHC PGKYYCLFCPKCKG
Subjt:  MPINTLF----NFNINHRFALLSNP----LNNFSFSSHS----LRFRTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGIVCDEHCTPGKYYCLFCPKCKG

Query:  GRLMERSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQIVGR-QAAIA
        GRLMERSLSLHVIPTG+FAMWRCF+ ECGWAGRIFADGRLAFN  ++T K+ GR++KES VLEPL DELISYFS RMISQETLERN VMQ+VGR Q AIA
Subjt:  GRLMERSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQIVGR-QAAIA

Query:  FTYRQNGQLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDK
        FTYRQNGQLVGCKYRT++KRFWQEKGT K LYG DDINDA+ELIIVEGEMDKLSVEEAGF NCISVPGGAP+KVSTD +P IEKD+AYQYLW C+DYLDK
Subjt:  FTYRQNGQLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDK

Query:  VSRIILATDSDEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANE-LCRRGPQTL
        VSRIILATDSD PG+ALAEELARRLGKHRCWRVDWPYKD  NRFKDANE L   GP  L
Subjt:  VSRIILATDSDEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANE-LCRRGPQTL

A0A6J1CNI0 primase homolog protein isoform X1

1.3e-163

76.86

Show/hide

Query:  CSPLHQTPHCSPNLQI-------QMPINTLFNFNINHRFALLSNPLNNFSFSSHS-LRFRTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGIVCDEHCTP
        CSPL Q P     LQI       QMPIN  F    NHR A L +PLN FSFSS   LRF +TR  SA SHAPPPPSPPPVKVL EKM LIGI CDE+CTP
Subjt:  CSPLHQTPHCSPNLQI-------QMPINTLFNFNINHRFALLSNPLNNFSFSSHS-LRFRTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGIVCDEHCTP

Query:  GKYYCLFCPKCKGGRLMERSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNA
        GKYYCLFCPKCKGG L ERSLSLHV+PTG+FAMWRC+ SECGWAGRIFADGRLAFN L RTVKL GR+AKES VLEPLGDELI YFSKRMI QETLERN 
Subjt:  GKYYCLFCPKCKGGRLMERSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNA

Query:  VMQIVGRQAAIAFTYRQNGQLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAV-PSIEKDTA
        VMQI GRQ  IAFTYRQNGQL+GCKYRT++KRFWQEKGTEKLLYG DDINDA+E+IIVEGEMDKLSVEEAGF NCISVPGGAP KVSTD+V PSIEKDTA
Subjt:  VMQIVGRQAAIAFTYRQNGQLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAV-PSIEKDTA

Query:  YQYLWRCRDYLDKVSRIILATDSDEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANE-LCRRGPQTL---ITIGNNFEQSKTNR
        YQYLW C+DYLDKVS IILATDSDEPG+ALAEELARRLGKHRCWRVDWPYKD+ NRFKDANE L   GP  L   +    ++E S  N+
Subjt:  YQYLWRCRDYLDKVSRIILATDSDEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANE-LCRRGPQTL---ITIGNNFEQSKTNR

A0A6J1GUU9 primase homolog protein-like isoform X1

8.9e-165

77.69

Show/hide

Query:  QIQMPINTLFNFNINHRFALLSNPLNNFSFSSHSLRFRTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGIVCDEHCTPGKYYCLFCPKCKGGRLMERSLS
        +IQMP+ T FNFN NHR A+ S+PLNNFSFSS SL    TR   A+S  PP PSPPPVKVL EKM LIGIVCDE CTPGKYYCL CPKCKGGRLMERSLS
Subjt:  QIQMPINTLFNFNINHRFALLSNPLNNFSFSSHSLRFRTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGIVCDEHCTPGKYYCLFCPKCKGGRLMERSLS

Query:  LHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQIVGRQAAIAFTYRQNGQLV
        LHVIPTG+FAMWRCFQSECGWAGRIFADGRLAFNE +RT KLFG TAK+S +LEPLGDELI+YFSKRMISQETL+RN VMQ   RQAAIAFTYRQNGQLV
Subjt:  LHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQIVGRQAAIAFTYRQNGQLV

Query:  GCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKVSRIILATDS
        GCKYRTI K+FWQ KGTEKL YG DDINDA+ELIIVEGEMDKLSVEEAGF NCISVPGGAP KVST+AV SI+KDTAYQYLW C+D LDKV RIILATDS
Subjt:  GCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKVSRIILATDS

Query:  DEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANE-LCRRGPQTLITIGNNFEQSKTNRSCEVHERDV
        DEPG+ALAEELA RLGKHRCWRVDWPYKD+ NRFKDANE L + G   L       E +K+ + C+  E  V
Subjt:  DEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANE-LCRRGPQTLITIGNNFEQSKTNRSCEVHERDV

A0A6J1K3X3 primase homolog protein isoform X1

2.2e-163

81.69

Show/hide

Query:  QIQMPINTLFNFNINHRFALLSNPLNNFSFSSHSLRFRTTRSFSAVSHAPPPPSP----PPVKVLTEKMGLIGIVCDEHCTPGKYYCLFCPKCKGGRLME
        +IQMP+ T FNFN NHR A+ S+PLNNFSFSS SL    TR   A+S  PP PSP    PPVKVL EKM LIGIVCDE CTPGKYYCL CPKCKGGRLME
Subjt:  QIQMPINTLFNFNINHRFALLSNPLNNFSFSSHSLRFRTTRSFSAVSHAPPPPSP----PPVKVLTEKMGLIGIVCDEHCTPGKYYCLFCPKCKGGRLME

Query:  RSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQIVGRQAAIAFTYRQN
        RSLSLHVIPTG+FAMWRCFQSECGWAGRIFADGRLAFNE +RT KLFG T K+S +LEPLGDELI+YFSKRMISQETL+RN VMQ  GRQAAIAFTYRQN
Subjt:  RSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQIVGRQAAIAFTYRQN

Query:  GQLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKVSRIIL
        GQLVGCKYRTI K+FWQ KGTEKL YG DDINDA+ELIIVEGEMDKLSVEEAGF NCISVPGGAPNKVST+AV SI+KDTAYQYLW C+D LDKV R+IL
Subjt:  GQLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKVSRIIL

Query:  ATDSDEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANEL
        ATDSDEPG+ALAEELA RLGKHRCWRVDWPYKD+ NRFKDANE+
Subjt:  ATDSDEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANEL

SwissProt top hits

e value

%identity

Alignment

B5X582 Twinkle homolog protein, chloroplastic/mitochondrial

2.3e-85

47.44

Show/hide

Query:  NINHRF--ALLSNPLNNFSFSSHSLRFRTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGI------------VCDEHCTPGKYYCLFCPKCKGGRLMERS
        +++ RF   L S P+     S +S  ++ T   S+ +  P  P+P   +V  +K  ++              V  E+C PG++  L CP C+GG   E+S
Subjt:  NINHRF--ALLSNPLNNFSFSSHSLRFRTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGI------------VCDEHCTPGKYYCLFCPKCKGGRLMERS

Query:  LSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQ-IVGRQAAIAFTYRQNG
        LSL + P G  A W CF+ +CG  G + ADG LA    +   K+  +   E   LEPL DE+  YF+ R IS++TLERN VMQ  +G +  IAFTY Q G
Subjt:  LSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQ-IVGRQAAIAFTYRQNG

Query:  QLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKVSRIILA
        +LV CKYR++ K F+QE+ T ++LYG DDI    E+IIVEGE+DKL++EEAGF NC+SVP GAP KVS+  +PS +KDT Y++LW C DYL K SRI++A
Subjt:  QLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKVSRIILA

Query:  TDSDEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANE-LCRRGPQTL
        TD D PG+A+AEE+ARRLGK RCWRV WP K E   FKDANE L  +GP  L
Subjt:  TDSDEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANE-LCRRGPQTL

F4I6E6 Primase homolog protein

2.9e-80

49.06

Show/hide

Query:  RTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGIVCD-----EHCTPGKYYCLFCPKCKGGRLMERSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLA
        ++T  FS+     P        VL++ + L+  + +     ++C PG   CL CPKC+ G   E+SL+L++ P G  A W C + +CG  G +  DG+L 
Subjt:  RTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGIVCD-----EHCTPGKYYCLFCPKCKGGRLMERSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLA

Query:  FNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQ-IVGRQAAIAFTYRQNGQLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAE
          +     K+  +   ES  LEPL DE+  +F+ R IS +TLERN VMQ  +  +  IAFTY Q G+LV CKYR++ K+F QE+ T K+LYG DDI +  
Subjt:  FNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQ-IVGRQAAIAFTYRQNGQLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAE

Query:  ELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKVSRIILATDSDEPGKALAEELARRLGKHRCWRVDWPYKDEL
        E+IIVEGE DKL++EEAGFFNC+SVP GAP  VS+  +PS  KDTA++Y+W C DYL K SRI++ATD D PG+ALAEELARRLGK RCW V WP K E 
Subjt:  ELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKVSRIILATDSDEPGKALAEELARRLGKHRCWRVDWPYKDEL

Query:  NRFKDANE-LCRRGPQTL
          FKDANE L  +GP  L
Subjt:  NRFKDANE-LCRRGPQTL

Arabidopsis top hits

e value

%identity

Alignment

AT1G30660.1 nucleic acid binding;nucleic acid binding

2.1e-81

49.06

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Query:  RTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGIVCD-----EHCTPGKYYCLFCPKCKGGRLMERSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLA
        ++T  FS+     P        VL++ + L+  + +     ++C PG   CL CPKC+ G   E+SL+L++ P G  A W C + +CG  G +  DG+L 
Subjt:  RTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGIVCD-----EHCTPGKYYCLFCPKCKGGRLMERSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLA

Query:  FNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQ-IVGRQAAIAFTYRQNGQLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAE
          +     K+  +   ES  LEPL DE+  +F+ R IS +TLERN VMQ  +  +  IAFTY Q G+LV CKYR++ K+F QE+ T K+LYG DDI +  
Subjt:  FNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQ-IVGRQAAIAFTYRQNGQLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAE

Query:  ELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKVSRIILATDSDEPGKALAEELARRLGKHRCWRVDWPYKDEL
        E+IIVEGE DKL++EEAGFFNC+SVP GAP  VS+  +PS  KDTA++Y+W C DYL K SRI++ATD D PG+ALAEELARRLGK RCW V WP K E 
Subjt:  ELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKVSRIILATDSDEPGKALAEELARRLGKHRCWRVDWPYKDEL

Query:  NRFKDANE-LCRRGPQTL
          FKDANE L  +GP  L
Subjt:  NRFKDANE-LCRRGPQTL

AT1G30680.1 toprim domain-containing protein

1.6e-86

47.44

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Query:  NINHRF--ALLSNPLNNFSFSSHSLRFRTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGI------------VCDEHCTPGKYYCLFCPKCKGGRLMERS
        +++ RF   L S P+     S +S  ++ T   S+ +  P  P+P   +V  +K  ++              V  E+C PG++  L CP C+GG   E+S
Subjt:  NINHRF--ALLSNPLNNFSFSSHSLRFRTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGI------------VCDEHCTPGKYYCLFCPKCKGGRLMERS

Query:  LSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQ-IVGRQAAIAFTYRQNG
        LSL + P G  A W CF+ +CG  G + ADG LA    +   K+  +   E   LEPL DE+  YF+ R IS++TLERN VMQ  +G +  IAFTY Q G
Subjt:  LSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQ-IVGRQAAIAFTYRQNG

Query:  QLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKVSRIILA
        +LV CKYR++ K F+QE+ T ++LYG DDI    E+IIVEGE+DKL++EEAGF NC+SVP GAP KVS+  +PS +KDT Y++LW C DYL K SRI++A
Subjt:  QLVGCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKVSRIILA

Query:  TDSDEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANE-LCRRGPQTL
        TD D PG+A+AEE+ARRLGK RCWRV WP K E   FKDANE L  +GP  L
Subjt:  TDSDEPGKALAEELARRLGKHRCWRVDWPYKDELNRFKDANE-LCRRGPQTL

Sequences

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CDS sequence

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ATGAGGCTTCTTCGACTCTGCTCTCCATTACATCAAACTCCCCATTGTTCTCCAAATTTACAGATTCAAATGCCAATAAACACCCTTTTCAACTTCAACATCAATCATCG
ATTTGCCCTTCTTTCCAATCCCCTTAACAATTTCTCCTTCTCTTCCCATTCCCTTCGATTCCGCACAACCAGATCATTCTCCGCCGTTTCTCACGCTCCGCCGCCGCCGT
CGCCACCACCAGTGAAGGTTTTAACGGAGAAGATGGGTCTCATCGGAATCGTTTGCGATGAACATTGTACTCCTGGAAAATACTATTGCCTCTTCTGTCCCAAGTGCAAG
GGTGGGCGTTTAATGGAGAGGAGTTTATCTCTTCATGTTATTCCAACTGGAGAATTTGCAATGTGGAGGTGTTTCCAGTCTGAGTGTGGTTGGGCAGGCCGGATATTTGC
AGATGGCAGATTGGCATTTAACGAACTCAACAGAACTGTTAAGTTGTTTGGACGAACTGCAAAGGAGAGTTCGGTTTTGGAGCCTCTTGGGGATGAGCTTATATCTTACT
TCAGCAAGAGAATGATATCCCAGGAAACTCTAGAAAGGAATGCTGTTATGCAAATAGTTGGTCGTCAGGCTGCTATTGCATTTACATATAGACAAAATGGGCAGCTAGTT
GGCTGCAAGTACCGAACCATAGAAAAGAGATTTTGGCAGGAGAAGGGTACAGAAAAGTTATTGTATGGTTTTGATGACATTAATGATGCAGAGGAACTCATCATTGTTGA
AGGCGAAATGGATAAACTTTCAGTGGAAGAAGCTGGCTTCTTCAATTGTATTAGTGTTCCTGGTGGTGCCCCAAACAAGGTCTCAACTGATGCAGTGCCATCAATTGAAA
AGGATACTGCATACCAGTATTTATGGAGATGCAGAGATTACTTGGATAAGGTTTCCCGCATTATCTTGGCTACTGATAGTGATGAACCGGGGAAAGCTTTGGCAGAAGAG
CTAGCTCGCCGCCTTGGAAAACACAGATGCTGGCGGGTAGATTGGCCATATAAAGATGAACTCAACCGTTTTAAAGATGCCAATGAGCTTTGCAGAAGAGGACCTCAGAC
CTTGATAACTATAGGAAACAATTTTGAGCAGTCCAAAACAAATAGATCTTGTGAGGTGCACGAGAGAGATGTGTTCTTTGATAGATTATAA

mRNA sequence

Show/hide mRNA sequence

CAGAAACAGAGAAAATCAGCGAAGAAGAAGATGAGGCTTCTTCGACTCTGCTCTCCATTACATCAAACTCCCCATTGTTCTCCAAATTTACAGATTCAAATGCCAATAAA
CACCCTTTTCAACTTCAACATCAATCATCGATTTGCCCTTCTTTCCAATCCCCTTAACAATTTCTCCTTCTCTTCCCATTCCCTTCGATTCCGCACAACCAGATCATTCT
CCGCCGTTTCTCACGCTCCGCCGCCGCCGTCGCCACCACCAGTGAAGGTTTTAACGGAGAAGATGGGTCTCATCGGAATCGTTTGCGATGAACATTGTACTCCTGGAAAA
TACTATTGCCTCTTCTGTCCCAAGTGCAAGGGTGGGCGTTTAATGGAGAGGAGTTTATCTCTTCATGTTATTCCAACTGGAGAATTTGCAATGTGGAGGTGTTTCCAGTC
TGAGTGTGGTTGGGCAGGCCGGATATTTGCAGATGGCAGATTGGCATTTAACGAACTCAACAGAACTGTTAAGTTGTTTGGACGAACTGCAAAGGAGAGTTCGGTTTTGG
AGCCTCTTGGGGATGAGCTTATATCTTACTTCAGCAAGAGAATGATATCCCAGGAAACTCTAGAAAGGAATGCTGTTATGCAAATAGTTGGTCGTCAGGCTGCTATTGCA
TTTACATATAGACAAAATGGGCAGCTAGTTGGCTGCAAGTACCGAACCATAGAAAAGAGATTTTGGCAGGAGAAGGGTACAGAAAAGTTATTGTATGGTTTTGATGACAT
TAATGATGCAGAGGAACTCATCATTGTTGAAGGCGAAATGGATAAACTTTCAGTGGAAGAAGCTGGCTTCTTCAATTGTATTAGTGTTCCTGGTGGTGCCCCAAACAAGG
TCTCAACTGATGCAGTGCCATCAATTGAAAAGGATACTGCATACCAGTATTTATGGAGATGCAGAGATTACTTGGATAAGGTTTCCCGCATTATCTTGGCTACTGATAGT
GATGAACCGGGGAAAGCTTTGGCAGAAGAGCTAGCTCGCCGCCTTGGAAAACACAGATGCTGGCGGGTAGATTGGCCATATAAAGATGAACTCAACCGTTTTAAAGATGC
CAATGAGCTTTGCAGAAGAGGACCTCAGACCTTGATAACTATAGGAAACAATTTTGAGCAGTCCAAAACAAATAGATCTTGTGAGGTGCACGAGAGAGATGTGTTCTTTG
ATAGATTATAAGTTTTTATTTTGTTATGAGATTATATGTTTTTCTTCAGAGTCTAGACTAAATAAAAAAAGTAGACCTCAAGAGTTCGACTGGTTTGAAACGTTCTGATC
GGCCGGTGTGACATAAATTAGCATGTATCCTAAACCCACCCTTCAATCCTCAAATATTGTTGTTGTACTAAAAATATGATTTTTGATAACCTTTTGATTTTTTGTTTTCT
AAATTTAAGCTTTTTTTTACTGATA

Protein sequence

Show/hide protein sequence

MRLLRLCSPLHQTPHCSPNLQIQMPINTLFNFNINHRFALLSNPLNNFSFSSHSLRFRTTRSFSAVSHAPPPPSPPPVKVLTEKMGLIGIVCDEHCTPGKYYCLFCPKCK
GGRLMERSLSLHVIPTGEFAMWRCFQSECGWAGRIFADGRLAFNELNRTVKLFGRTAKESSVLEPLGDELISYFSKRMISQETLERNAVMQIVGRQAAIAFTYRQNGQLV
GCKYRTIEKRFWQEKGTEKLLYGFDDINDAEELIIVEGEMDKLSVEEAGFFNCISVPGGAPNKVSTDAVPSIEKDTAYQYLWRCRDYLDKVSRIILATDSDEPGKALAEE
LARRLGKHRCWRVDWPYKDELNRFKDANELCRRGPQTLITIGNNFEQSKTNRSCEVHERDVFFDRL

Sed0001268 (gene) of Chayote v1 genome