CuGenDBv2

Gene ID	Sed0001281
Organism	Sechium edule (Chayote v1)
Description	classical arabinogalactan protein 1-like
Genome location	LG07:8854210..8854835
RNA-Seq Expression	Sed0001281
Synteny	Sed0001281
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR044959 - Classical arabinogalactan protein

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022922765.1 classical arabinogalactan protein 1-like [Cucurbita moschata]

9.3e-20

74.34

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Query:  MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSK---KSPSVKPPKSSPAASPTPAASP--------SPSSISSPPADAPAPSVNGAASVSFSVIG
        MA RSFVV+IL A+LIGSAIAQSP+ASPS SP KSPSK    SPSVK PKSSPAA PTPA+SP        SPSSISSPPADAPAPS +GAAS+SFSV G
Subjt:  MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSK---KSPSVKPPKSSPAASPTPAASP--------SPSSISSPPADAPAPSVNGAASVSFSVIG

Query:  SVAVVLCGAVLMI
        SVAVVL   VLMI
Subjt:  SVAVVLCGAVLMI

XP_022942993.1 classical arabinogalactan protein 1-like [Cucurbita moschata]

2.5e-17

65.29

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Query:  MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSKK---SPSVKPPKSSPAASPTPAA----------------SPSPSSISSPPADAPAPSVNGAA
        MA R FVV++  AMLI SAIAQSPSASPS SP KSPSK    SPSV+ PKSSPAA+PTPA+                SPSPSSISSPPADAPAPS N AA
Subjt:  MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSKK---SPSVKPPKSSPAASPTPAA----------------SPSPSSISSPPADAPAPSVNGAA

Query:  SVSFSVIGSVAVVLCGAVLMI
        S+SFS+ GSVA VL   VLMI
Subjt:  SVSFSVIGSVAVVLCGAVLMI

XP_022985016.1 classical arabinogalactan protein 1-like [Cucurbita maxima]

2.4e-20

75.22

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Query:  MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSK---KSPSVKPPKSSPAASPTPAASP--------SPSSISSPPADAPAPSVNGAASVSFSVIG
        MA RSFVV+IL A+LIGSAIAQSP+ASPS SP KSPSK    SPSVK PKSSPAA PTPA+SP        SPSSISSPPADAPAPS NGAAS+SFSV G
Subjt:  MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSK---KSPSVKPPKSSPAASPTPAASP--------SPSSISSPPADAPAPSVNGAASVSFSVIG

Query:  SVAVVLCGAVLMI
        SVAVVL   VLMI
Subjt:  SVAVVLCGAVLMI

XP_023542663.1 classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]

9.6e-17

63.41

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Query:  MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSKK---SPSVKPPKSSPAASPTPAA------------------SPSPSSISSPPADAPAPSVNG
        MA R FVV+++ AMLI SAIAQSPSASPS SP KSPSK    SPSV+ PKSSPAA+PTPA+                  SPSPSSISSPPADAPAPS N 
Subjt:  MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSKK---SPSVKPPKSSPAASPTPAA------------------SPSPSSISSPPADAPAPSVNG

Query:  AASVSFSVIGSVAVVLCGAVLMI
        AAS+S S+ GSVA VL   VLMI
Subjt:  AASVSFSVIGSVAVVLCGAVLMI

XP_023552483.1 classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]

9.3e-20

74.34

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Query:  MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSK---KSPSVKPPKSSPAASPTPAASP--------SPSSISSPPADAPAPSVNGAASVSFSVIG
        MA RSFVV+IL A+LIGSAIAQSP+ASPS SP KSPSK    SPSVK PKSSPAA PTPA+SP        SPSSISSPPADAPAPS +GAAS+SFSV G
Subjt:  MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSK---KSPSVKPPKSSPAASPTPAASP--------SPSSISSPPADAPAPSVNGAASVSFSVIG

Query:  SVAVVLCGAVLMI
        SVAVVL   VLMI
Subjt:  SVAVVLCGAVLMI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KZB8 Uncharacterized protein

4.5e-12

56.67

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Query:  MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSKKSPSVKPPKSSPAASPTPAA------------------SPSPSSISSPPADAPAPSVNGAAS
        MA  S V LI  +  I SA AQSP+ASPS SP KSPS K+PS   PKSSPA +PTP++                  + SP+SISSPPADAPAPS NGAAS
Subjt:  MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSKKSPSVKPPKSSPAASPTPAA------------------SPSPSSISSPPADAPAPSVNGAAS

Query:  VSFSVIGSVAVVLCGAVLMI
        ++FSV GSVAV L   VLMI
Subjt:  VSFSVIGSVAVVLCGAVLMI

A0A6J1E9Q3 classical arabinogalactan protein 1-like

4.5e-20

74.34

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Query:  MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSK---KSPSVKPPKSSPAASPTPAASP--------SPSSISSPPADAPAPSVNGAASVSFSVIG
        MA RSFVV+IL A+LIGSAIAQSP+ASPS SP KSPSK    SPSVK PKSSPAA PTPA+SP        SPSSISSPPADAPAPS +GAAS+SFSV G
Subjt:  MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSK---KSPSVKPPKSSPAASPTPAASP--------SPSSISSPPADAPAPSVNGAASVSFSVIG

Query:  SVAVVLCGAVLMI
        SVAVVL   VLMI
Subjt:  SVAVVLCGAVLMI

A0A6J1FW49 classical arabinogalactan protein 1-like

1.2e-17

65.29

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Query:  MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSKK---SPSVKPPKSSPAASPTPAA----------------SPSPSSISSPPADAPAPSVNGAA
        MA R FVV++  AMLI SAIAQSPSASPS SP KSPSK    SPSV+ PKSSPAA+PTPA+                SPSPSSISSPPADAPAPS N AA
Subjt:  MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSKK---SPSVKPPKSSPAASPTPAA----------------SPSPSSISSPPADAPAPSVNGAA

Query:  SVSFSVIGSVAVVLCGAVLMI
        S+SFS+ GSVA VL   VLMI
Subjt:  SVSFSVIGSVAVVLCGAVLMI

A0A6J1J6X2 classical arabinogalactan protein 1-like

1.2e-20

75.22

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Query:  MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSK---KSPSVKPPKSSPAASPTPAASP--------SPSSISSPPADAPAPSVNGAASVSFSVIG
        MA RSFVV+IL A+LIGSAIAQSP+ASPS SP KSPSK    SPSVK PKSSPAA PTPA+SP        SPSSISSPPADAPAPS NGAAS+SFSV G
Subjt:  MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSK---KSPSVKPPKSSPAASPTPAASP--------SPSSISSPPADAPAPSVNGAASVSFSVIG

Query:  SVAVVLCGAVLMI
        SVAVVL   VLMI
Subjt:  SVAVVLCGAVLMI

A0A6J1JSK4 classical arabinogalactan protein 1-like

1.8e-16

62.81

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Query:  MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSKK---SPSVKPPKSSPAASPTPAA----------------SPSPSSISSPPADAPAPSVNGAA
        MA+R FVV++  AMLI SAIAQSPSASPS SP KSPSK    SPSV+ PKSSPAA+PTP +                SPSPSSISSPPADAPAPS N AA
Subjt:  MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSKK---SPSVKPPKSSPAASPTPAA----------------SPSPSSISSPPADAPAPSVNGAA

Query:  SVSFSVIGSVAVVLCGAVLMI
        S+S S+ GSVA VL   V MI
Subjt:  SVSFSVIGSVAVVLCGAVLMI

SwissProt top hits

e value

%identity

Alignment

Q8LCN5 Classical arabinogalactan protein 1

1.1e-04

39.84

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Query:  NRSFVVLILAAMLIGSAIAQSPSASPSP------SPAKSPSKKSPSVKPPKSSPAASPTPAASP----------------------SPSSISSPPADAPA
        ++S V ++LAA+LI SA+AQSP+ +PS       SPA SP K +     P+ SP+ SP  A +P                      SPS+IS  P +AP 
Subjt:  NRSFVVLILAAMLIGSAIAQSPSASPSP------SPAKSPSKKSPSVKPPKSSPAASPTPAASP----------------------SPSSISSPPADAPA

Query:  PSVNGAASVSFSVIGSVAVVLCGAVLMI
        P+  GA S  F+  GSVAV+L  AVL+I
Subjt:  PSVNGAASVSFSVIGSVAVVLCGAVLMI

Arabidopsis top hits

e value

%identity

Alignment

AT5G64310.1 arabinogalactan protein 1

8.1e-06

39.84

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Query:  NRSFVVLILAAMLIGSAIAQSPSASPSP------SPAKSPSKKSPSVKPPKSSPAASPTPAASP----------------------SPSSISSPPADAPA
        ++S V ++LAA+LI SA+AQSP+ +PS       SPA SP K +     P+ SP+ SP  A +P                      SPS+IS  P +AP 
Subjt:  NRSFVVLILAAMLIGSAIAQSPSASPSP------SPAKSPSKKSPSVKPPKSSPAASPTPAASP----------------------SPSSISSPPADAPA

Query:  PSVNGAASVSFSVIGSVAVVLCGAVLMI
        P+  GA S  F+  GSVAV+L  AVL+I
Subjt:  PSVNGAASVSFSVIGSVAVVLCGAVLMI

Sequences

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CDS sequence

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ATGGCGAATAGAAGTTTTGTGGTGTTGATTCTGGCGGCGATGTTGATCGGCTCTGCAATCGCGCAATCGCCGTCGGCATCTCCGTCACCGTCTCCAGCCAAATCTCCGTC
CAAAAAATCTCCGTCCGTCAAGCCGCCGAAATCCTCCCCTGCGGCGTCGCCTACTCCGGCTGCTTCCCCGTCTCCGTCGTCGATCTCCTCGCCGCCGGCAGACGCTCCGG
CTCCGTCAGTTAACGGTGCCGCTTCCGTCTCCTTCTCCGTGATCGGATCTGTCGCCGTTGTGCTGTGCGGCGCCGTTTTGATGATCTGA

mRNA sequence

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GAAACAACTGAGAATTCACTTTCTCTCTCAAATCGATTTCTCCATTTTTCCTCTCATTCAATATTCTTCAATTTTCTTCTCAACATAAATGGCGAATAGAAGTTTTGTGG
TGTTGATTCTGGCGGCGATGTTGATCGGCTCTGCAATCGCGCAATCGCCGTCGGCATCTCCGTCACCGTCTCCAGCCAAATCTCCGTCCAAAAAATCTCCGTCCGTCAAG
CCGCCGAAATCCTCCCCTGCGGCGTCGCCTACTCCGGCTGCTTCCCCGTCTCCGTCGTCGATCTCCTCGCCGCCGGCAGACGCTCCGGCTCCGTCAGTTAACGGTGCCGC
TTCCGTCTCCTTCTCCGTGATCGGATCTGTCGCCGTTGTGCTGTGCGGCGCCGTTTTGATGATCTGAGAGCAGAGTTCTGATTTCATTAGCTTTGCTCTGTTCTCTATAT
CTGAGTGATTTTGTTTGATTTTTGATTTTTTTTTTCTGCTCAGTTTCTGATGGATTCTATATTTAATTTTTTTTCCCTCTGATTTAATTTGTTTCTTAGTTATGTGGATT
ATGTGTTTGTTGTTAAACCGAGCTTTTTCTGTATATCGGATTCTTATCGTATTTTAATTTATATCACATTCCATAA

Protein sequence

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MANRSFVVLILAAMLIGSAIAQSPSASPSPSPAKSPSKKSPSVKPPKSSPAASPTPAASPSPSSISSPPADAPAPSVNGAASVSFSVIGSVAVVLCGAVLMI

Sed0001281 (gene) of Chayote v1 genome