; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0001299 (gene) of Chayote v1 genome

Gene IDSed0001299
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S24
Genome locationLG08:31492548..31494726
RNA-Seq ExpressionSed0001299
SyntenySed0001299
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001976 - Ribosomal protein S24e
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR018098 - Ribosomal S24e conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3976140.1 hypothetical protein CMV_000636 [Castanea mollissima]3.5e-6294.89Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK ELKEKL+ +YEVKDTNAIFVFKF+THFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNR KKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

KAG6588329.1 40S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia]1.3e-6194.16Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK ELKEKLA +Y+VKD NAIFVFKF+THFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNR KKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

XP_021619696.1 40S ribosomal protein S24-1-like [Manihot esculenta]4.5e-6293.43Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSK ELKEKLA+LYEVKD NAIFVFKF+THFGGGKS+GFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRTKK+RG+KKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

XP_022933090.1 40S ribosomal protein S24-1-like [Cucurbita moschata]1.3e-6194.16Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK ELKEKLA +Y+VKD NAIFVFKF+THFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNR KKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

XP_042053613.1 40S ribosomal protein S24-1-like [Salvia splendens]7.7e-6294.16Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGR NVSK ELKEKLA +YEVKDTNAIFVFKF+THFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        K+EKSRKQMKERKNRTKKIRGVKKTKA DAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

TrEMBL top hitse value%identityAlignment
A0A2C9VFS9 40S ribosomal protein S242.2e-6293.43Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSK ELKEKLA+LYEVKD NAIFVFKF+THFGGGKS+GFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRTKK+RG+KKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

A0A4D9BQW7 40S ribosomal protein S243.7e-6294.16Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGR NVSK ELKEKLA +YEVKDTNAIFVFKF+THFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        K+EKSRKQMKERKNRTKKIRGVKKTKA DAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

A0A6J1F3Y6 40S ribosomal protein S246.4e-6294.16Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK ELKEKLA +Y+VKD NAIFVFKF+THFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNR KKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

A0A6J1I401 40S ribosomal protein S246.4e-6294.16Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK ELKEKLA +Y+VKD NAIFVFKF+THFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNR KKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

A0A6P6TCG2 40S ribosomal protein S248.3e-6294.16Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK ELKEKLA +YEVKD NAIFVFKF+THFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQ+KERKNRTKKIRGVKKTKA DAAK GKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

SwissProt top hitse value%identityAlignment
Q56JU9 40S ribosomal protein S241.5e-3665.15Show/hide
Query:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKS
        VTIRTRKFMTNRLL RKQ VIDVLHPG+  V KTE++EKLA +Y+    + IFVF F+THFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + S
Subjt:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKS

Query:  RKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        RKQ KERKNR KK+RG  K        AGKKK
Subjt:  RKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

Q5RAQ8 40S ribosomal protein S241.5e-3665.15Show/hide
Query:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKS
        VTIRTRKFMTNRLL RKQ VIDVLHPG+  V KTE++EKLA +Y+    + IFVF F+THFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + S
Subjt:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKS

Query:  RKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        RKQ KERKNR KK+RG  K        AGKKK
Subjt:  RKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

Q8LC83 40S ribosomal protein S24-21.0e-5685.61Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSK ELKEKLA +YEVKD NAIF FKF+THFGGGKS+G+GLIYD+VENAKKFEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNR KKIRGVKKTKA D  K
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK

Q962Q6 40S ribosomal protein S241.1e-3965.91Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        M +   TIRTRKFMTNRLL+RKQ V DVLHPG+P VSKTE++EKLA +Y+V   + +FVF FKT+FGGGKSTGF LIYD+++ AKKFEPK+RL R+GL  
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK
        K   +RKQ KERKNR KK+RG KK+K   AAK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK

Q9SS17 40S ribosomal protein S24-11.9e-5888.64Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSK ELKEKLA +YEVKD NAIFVFKF+THFGGGKS+GFGLIYD+VE+AKKFEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNR KKIRGVKKTKA DA K
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK

Arabidopsis top hitse value%identityAlignment
AT3G04920.1 Ribosomal protein S24e family protein1.3e-5988.64Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSK ELKEKLA +YEVKD NAIFVFKF+THFGGGKS+GFGLIYD+VE+AKKFEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNR KKIRGVKKTKA DA K
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK

AT5G28060.1 Ribosomal protein S24e family protein7.2e-5885.61Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSK ELKEKLA +YEVKD NAIF FKF+THFGGGKS+G+GLIYD+VENAKKFEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNR KKIRGVKKTKA D  K
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGACAAGGCCGTCACCATCCGCACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAATTCGTCATTGATGTTCTTCACCCAGGCAGACCCAACGTCTC
TAAGACTGAGCTGAAGGAGAAGTTGGCTGCACTCTATGAGGTCAAAGATACAAATGCCATCTTTGTTTTCAAGTTCAAAACCCACTTTGGTGGAGGAAAATCTACTGGGT
TTGGCTTGATCTATGATTCTGTTGAGAATGCAAAGAAGTTCGAGCCAAAATATAGGCTAATCAGGAATGGACTTGATACTAAGGTAGAAAAATCAAGGAAGCAAATGAAA
GAAAGGAAGAACAGGACCAAGAAAATCCGTGGAGTCAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAGAAATGA
mRNA sequenceShow/hide mRNA sequence
GGTTTTTCCGCTTTCTCTTCTATCGTATCGTAGCCTTCAGGTCTCAGAGCTGCCGTTCCTCGAGCTTCAAGCTTTCCATCCTCTTCGGAGCACATCCAGCCATGGCAGAC
AAGGCCGTCACCATCCGCACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAATTCGTCATTGATGTTCTTCACCCAGGCAGACCCAACGTCTCTAAGACTGA
GCTGAAGGAGAAGTTGGCTGCACTCTATGAGGTCAAAGATACAAATGCCATCTTTGTTTTCAAGTTCAAAACCCACTTTGGTGGAGGAAAATCTACTGGGTTTGGCTTGA
TCTATGATTCTGTTGAGAATGCAAAGAAGTTCGAGCCAAAATATAGGCTAATCAGGAATGGACTTGATACTAAGGTAGAAAAATCAAGGAAGCAAATGAAAGAAAGGAAG
AACAGGACCAAGAAAATCCGTGGAGTCAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAGAAATGAGAATGCTGGAATTTTGTGTCTACCACCAAGCATCA
TCTGCAGTATTGTGCTTTCTTTTTTATAGTCTCTTTTTAGTTTTTTTTCCCCCTTAATTAAATTATGTTGATCATTATCTGGTTGTTGGTGACTAGTGATTGAAAACCTG
GTTCTTTGCAGAGGACAAAATTTTTGACGTTACAGGACATGTATTTCCTTTTTTTCCCCGAATCTTTTGGTTGACCCATTCGAAGCATTATCCTTAATAGATTATCAAAA
AAATGACTGGGTAGGATAATCCAAGTTTATCAGATGGCTGTTTCAATTTTTCTTAATTGAGTTGTTTGCATATTTGTTAAGTTGTTGGAAAAGAATTCGATCCAATCTTG
TGGGGTAAATTTTTTATCACCTATCTAGGAATAATGTTTCGTTTGAATGAATACTTTAGTTAGGTATCTCTCAGGGGTGGTGCAGTGGTTGAAAGTTT
Protein sequenceShow/hide protein sequence
MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMK
ERKNRTKKIRGVKKTKASDAAKAGKKK