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Sed0001305 (gene) of Chayote v1 genome

Gene IDSed0001305
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG03:16151190..16153588
RNA-Seq ExpressionSed0001305
SyntenySed0001305
Gene Ontology termsGO:0006725 - cellular aromatic compound metabolic process (biological process)
GO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0046483 - heterocycle metabolic process (biological process)
GO:1901360 - organic cyclic compound metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8783244.1 Glutamyl-tRNA reductase 1, chloroplastic [Hordeum vulgare]9.8e-1636.36Show/hide
Query:  MSKAYDRVEWEFISNMMRKLGFCEQWIHLVMDCVSSVSFS-NPPLEDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALI
        MSKAYDRV+W F++ M+ KLGF   WI LVM CV +V +   P  ++  K N+D A +  +  +G G +  ++ GH + A AG+ E   D+  AE+ AL 
Subjt:  MSKAYDRVEWEFISNMMRKLGFCEQWIHLVMDCVSSVSFS-NPPLEDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALI

Query:  FGLRLALEKGAINVVVESDAKSAVEAVNSGRWLNSAYGVLISE
          +    E GA  V  E+D++   +A++  R   S Y  +I +
Subjt:  FGLRLALEKGAINVVVESDAKSAVEAVNSGRWLNSAYGVLISE

KAF5445494.1 hypothetical protein F2P56_034541 [Juglans regia]3.1e-1426.86Show/hide
Query:  MSKAYDRVEWEFISNMMRKLGFCEQWIHLVMDCVSSVSFS--------------------------------------------------------NPPL
        MSKAYDR++  F+  +M K+GF   WI L+M CV++VS+S                                                         PP 
Subjt:  MSKAYDRVEWEFISNMMRKLGFCEQWIHLVMDCVSSVSFS--------------------------------------------------------NPPL

Query:  EDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGAINVVVESDAKSAVEAVNSGRWLNSAYGVLISEAS
           LKLNVD        + GIG I+RN  G  + A+    +MA +    E++A + GL+L L  G   +VVE D    V+ +      +S  G L+ +  
Subjt:  EDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGAINVVVESDAKSAVEAVNSGRWLNSAYGVLISEAS

Query:  ALLHCGSFKGLSFVFREANLAADSLPHWACN-GSLSLEWEHI
         L+   +   +  V+RE N  A SL  +A N   + + W+++
Subjt:  ALLHCGSFKGLSFVFREANLAADSLPHWACN-GSLSLEWEHI

PQM35320.1 uncharacterized protein Pyn_06201 [Prunus yedoensis var. nudiflora]3.5e-1338.46Show/hide
Query:  PPLEDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGAINVVVESDAKSAVEAVNSGRWLNSAYGVLIS
        PP    LKLNVD ACS    + G+GA++RN HG  + A +      F +   E+LA+  GL+ A E G +++VVE++AK+A+  + SG       G +I+
Subjt:  PPLEDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGAINVVVESDAKSAVEAVNSGRWLNSAYGVLIS

Query:  EASALLHCGSFKGLSFVF--REANLAADSLPHWACNGSLSLE-WEHIVPPGLRKFL
        +   L    +F  LSFVF  R  N  AD L  +A  GS+S++ W    PP L  FL
Subjt:  EASALLHCGSFKGLSFVF--REANLAADSLPHWACNGSLSLE-WEHIVPPGLRKFL

XP_008231652.1 PREDICTED: uncharacterized protein LOC103330817 [Prunus mume]2.9e-1237.18Show/hide
Query:  PPLEDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGAINVVVESDAKSAVEAVNSGRWLNSAYGVLIS
        PPL   L+L VD ACS    + G+GA++RN HG  + A +      F +   E+LA+  GL+ A E G  ++VVESDAK+A+  + +G       G +I+
Subjt:  PPLEDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGAINVVVESDAKSAVEAVNSGRWLNSAYGVLIS

Query:  EASALLHCGSFKGLSFVFRE--ANLAADSLPHWACNGSLSLE-WEHIVPPGLRKFL
        +   L    +F  LSFVF     N  AD L  +A  GS+S++ W    PP +  FL
Subjt:  EASALLHCGSFKGLSFVFRE--ANLAADSLPHWACNGSLSLE-WEHIVPPGLRKFL

XP_021807757.1 uncharacterized protein LOC110751579 [Prunus avium]1.0e-1238.46Show/hide
Query:  PPLEDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGAINVVVESDAKSAVEAVNSGRWLNSAYGVLIS
        PP    LKLNVD ACS    + G+GA++RN HG  + A +      F +   E+LA+  GL+   E G  ++VVE+DAK+A+  + SG       G +I+
Subjt:  PPLEDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGAINVVVESDAKSAVEAVNSGRWLNSAYGVLIS

Query:  EASALLHCGSFKGLSFVF--REANLAADSLPHWACNGSLSLE-WEHIVPPGLRKFL
        +   L    +F  LSFVF  R  N  AD L  +A  GS+S++ W    PP L  FL
Subjt:  EASALLHCGSFKGLSFVF--REANLAADSLPHWACNGSLSLE-WEHIVPPGLRKFL

TrEMBL top hitse value%identityAlignment
A0A314UDF4 RNase H domain-containing protein1.7e-1338.46Show/hide
Query:  PPLEDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGAINVVVESDAKSAVEAVNSGRWLNSAYGVLIS
        PP    LKLNVD ACS    + G+GA++RN HG  + A +      F +   E+LA+  GL+ A E G +++VVE++AK+A+  + SG       G +I+
Subjt:  PPLEDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGAINVVVESDAKSAVEAVNSGRWLNSAYGVLIS

Query:  EASALLHCGSFKGLSFVF--REANLAADSLPHWACNGSLSLE-WEHIVPPGLRKFL
        +   L    +F  LSFVF  R  N  AD L  +A  GS+S++ W    PP L  FL
Subjt:  EASALLHCGSFKGLSFVF--REANLAADSLPHWACNGSLSLE-WEHIVPPGLRKFL

A0A446IKP8 Glutamyl-tRNA reductase4.2e-1233.12Show/hide
Query:  SFSNPPLEDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGAINVVVESDAKSAVEAVNSGRWLNSAYG
        S S PP++D  K+N+D A S G +  G G + R++ G  + A AG  E  FD+  AE+ AL   +  A E G +    E+D++   EA+++ R  +S Y 
Subjt:  SFSNPPLEDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGAINVVVESDAKSAVEAVNSGRWLNSAYG

Query:  VLISEASALLHCGSFK-GLSFVFREANLAADSLPHWACN--GSLSLEWEHIVPP
         +I +    L     K  +S   R  N  A  L    CN   +  +EW++IVPP
Subjt:  VLISEASALLHCGSFK-GLSFVFREANLAADSLPHWACN--GSLSLEWEHIVPP

A0A6P5RZ31 uncharacterized protein LOC1107515794.9e-1338.46Show/hide
Query:  PPLEDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGAINVVVESDAKSAVEAVNSGRWLNSAYGVLIS
        PP    LKLNVD ACS    + G+GA++RN HG  + A +      F +   E+LA+  GL+   E G  ++VVE+DAK+A+  + SG       G +I+
Subjt:  PPLEDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGAINVVVESDAKSAVEAVNSGRWLNSAYGVLIS

Query:  EASALLHCGSFKGLSFVF--REANLAADSLPHWACNGSLSLE-WEHIVPPGLRKFL
        +   L    +F  LSFVF  R  N  AD L  +A  GS+S++ W    PP L  FL
Subjt:  EASALLHCGSFKGLSFVF--REANLAADSLPHWACNGSLSLE-WEHIVPPGLRKFL

A0A803P130 Uncharacterized protein4.9e-1336.88Show/hide
Query:  SSVSFSNPPLEDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGAINVVVESDAKSAVEAVNSGRWLNS
        S+++  +PP    LKLNVDAA   GR ++G G++IRN  G  +AA A  Y  A +    E  +L+  LR  +EK     VVE+D K+  +A++  +   S
Subjt:  SSVSFSNPPLEDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGAINVVVESDAKSAVEAVNSGRWLNS

Query:  AYGVLISEASALLHCGSFKGLSFVFREANLAADSLPHWACNGSLSLEWEHIVPPGLRKFL
         +G LIS+    L       +S V R AN  AD L HWA        W    P  LR FL
Subjt:  AYGVLISEASALLHCGSFKGLSFVFREANLAADSLPHWACNGSLSLEWEHIVPPGLRKFL

M7YLM0 Glutamyl-tRNA reductase1.4e-1233.77Show/hide
Query:  SFSNPPLEDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGAINVVVESDAKSAVEAVNSGRWLNSAYG
        S S PP++D  K+N+D A S G +  G G + R++ G  + A AG  E  FD+  AE+ AL   +  A E G +    E+D+K   EA+++ R  +S Y 
Subjt:  SFSNPPLEDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGAINVVVESDAKSAVEAVNSGRWLNSAYG

Query:  VLISEASALLHCGSFK-GLSFVFREANLAADSLPHWACN--GSLSLEWEHIVPP
         +I +    L     K  +S   R  N  A  L    CN   +  +EW++IVPP
Subjt:  VLISEASALLHCGSFK-GLSFVFREANLAADSLPHWACN--GSLSLEWEHIVPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G24090.1 RNase H family protein9.2e-0430.26Show/hide
Query:  DCVSSVSFSNPPLEDCLK-------------LNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGAINVVVESD
        D + S S S  PLE   K             +  D A        G  A+++   G  I        +A ++ AAE  ALI GL+ A+EKG  N+ V+ D
Subjt:  DCVSSVSFSNPPLEDCLK-------------LNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGAINVVVESD

Query:  AKSAVEAVNSGRWL--NSAYGVLISEASALLH-CGSFKGLSFVFREANLAAD
        +K     +  G+W   +     L  EA  L + C SF+ +S V R  N  AD
Subjt:  AKSAVEAVNSGRWL--NSAYGVLISEASALLH-CGSFKGLSFVFREANLAAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAAGGCTTATGATAGGGTGGAATGGGAATTTATCAGTAACATGATGAGGAAGTTAGGGTTTTGTGAGCAGTGGATTCATTTGGTCATGGACTGTGTATCCTCAGT
TAGCTTTTCTAATCCTCCTCTAGAAGATTGCTTGAAATTGAACGTCGATGCAGCATGTTCTCTCGGAAGAAATCGAATGGGAATAGGCGCAATTATTCGAAATACCCATG
GTCATTGCATAGCTGCTTCTGCAGGTTTTTATGAGATGGCCTTTGATTCTTTAGCTGCTGAGATTTTAGCCCTGATATTTGGCTTGCGTTTGGCATTAGAGAAAGGAGCC
ATTAATGTGGTTGTTGAATCGGATGCAAAATCCGCTGTGGAGGCTGTGAATTCAGGTCGCTGGTTAAATTCAGCTTATGGAGTTCTTATCAGCGAAGCTTCTGCCCTATT
ACACTGTGGAAGTTTTAAGGGTTTGTCTTTTGTTTTTAGAGAGGCCAACTTGGCTGCCGATTCTTTACCCCATTGGGCTTGTAATGGTAGTTTGTCCTTGGAGTGGGAGC
ATATAGTCCCCCCTGGCTTGAGAAAATTCTTGTTGATGATGTGTAATTGGCCTGTGTGCTTTGGCTTTTTGCCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAAGGCTTATGATAGGGTGGAATGGGAATTTATCAGTAACATGATGAGGAAGTTAGGGTTTTGTGAGCAGTGGATTCATTTGGTCATGGACTGTGTATCCTCAGT
TAGCTTTTCTAATCCTCCTCTAGAAGATTGCTTGAAATTGAACGTCGATGCAGCATGTTCTCTCGGAAGAAATCGAATGGGAATAGGCGCAATTATTCGAAATACCCATG
GTCATTGCATAGCTGCTTCTGCAGGTTTTTATGAGATGGCCTTTGATTCTTTAGCTGCTGAGATTTTAGCCCTGATATTTGGCTTGCGTTTGGCATTAGAGAAAGGAGCC
ATTAATGTGGTTGTTGAATCGGATGCAAAATCCGCTGTGGAGGCTGTGAATTCAGGTCGCTGGTTAAATTCAGCTTATGGAGTTCTTATCAGCGAAGCTTCTGCCCTATT
ACACTGTGGAAGTTTTAAGGGTTTGTCTTTTGTTTTTAGAGAGGCCAACTTGGCTGCCGATTCTTTACCCCATTGGGCTTGTAATGGTAGTTTGTCCTTGGAGTGGGAGC
ATATAGTCCCCCCTGGCTTGAGAAAATTCTTGTTGATGATGTGTAATTGGCCTGTGTGCTTTGGCTTTTTGCCTCTTTAA
Protein sequenceShow/hide protein sequence
MSKAYDRVEWEFISNMMRKLGFCEQWIHLVMDCVSSVSFSNPPLEDCLKLNVDAACSLGRNRMGIGAIIRNTHGHCIAASAGFYEMAFDSLAAEILALIFGLRLALEKGA
INVVVESDAKSAVEAVNSGRWLNSAYGVLISEASALLHCGSFKGLSFVFREANLAADSLPHWACNGSLSLEWEHIVPPGLRKFLLMMCNWPVCFGFLPL