; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0001306 (gene) of Chayote v1 genome

Gene IDSed0001306
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S24
Genome locationLG08:26709779..26712647
RNA-Seq ExpressionSed0001306
SyntenySed0001306
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001976 - Ribosomal protein S24e
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR018098 - Ribosomal S24e conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3976140.1 hypothetical protein CMV_000636 [Castanea mollissima]1.6e-6295.62Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELK+KL+ MYEVKD NAIFVFKFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNR KKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

XP_002276521.1 PREDICTED: 40S ribosomal protein S24-1 [Vitis vinifera]2.0e-6294.16Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKDKLA MYEVKD N+IFVFKFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNR+KK+RGVKKTKA DAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

XP_007206128.1 40S ribosomal protein S24-1 [Prunus persica]2.7e-6294.16Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELK+KLA +YEVKDLN+IFVFKFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        K+EKSRKQ+KERKNR KKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

XP_010651973.1 PREDICTED: 40S ribosomal protein S24-1-like [Vitis vinifera]9.1e-6394.16Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MAD+AVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNV+KAELKDKLAGMYEVKD N+IFVFKFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNR KK+RGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

XP_011079869.1 40S ribosomal protein S24-1-like [Sesamum indicum]2.7e-6295.62Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELK+KLA MYEVKD NAIFVFKFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNR KKIRGVKKTKA+DAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

TrEMBL top hitse value%identityAlignment
A0A2C9VFS9 40S ribosomal protein S241.3e-6293.43Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELK+KLA +YEVKD NAIFVFKFRTHFGGGKS+GFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRTKK+RG+KKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

A0A6P6TCG2 40S ribosomal protein S241.3e-6295.62Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELK+KLA MYEVKD NAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQ+KERKNRTKKIRGVKKTKA DAAK GKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

A5BH65 40S ribosomal protein S249.9e-6394.16Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKDKLA MYEVKD N+IFVFKFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNR+KK+RGVKKTKA DAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

D7TDY2 40S ribosomal protein S244.4e-6394.16Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MAD+AVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNV+KAELKDKLAGMYEVKD N+IFVFKFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNR KK+RGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

M5W0R1 40S ribosomal protein S241.3e-6294.16Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELK+KLA +YEVKDLN+IFVFKFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        K+EKSRKQ+KERKNR KKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

SwissProt top hitse value%identityAlignment
Q56JU9 40S ribosomal protein S241.5e-3665.15Show/hide
Query:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKS
        VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E+++KLA MY+    + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + S
Subjt:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKS

Query:  RKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        RKQ KERKNR KK+RG  K        AGKKK
Subjt:  RKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

Q5RAQ8 40S ribosomal protein S241.5e-3665.15Show/hide
Query:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKS
        VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E+++KLA MY+    + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + S
Subjt:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKS

Query:  RKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        RKQ KERKNR KK+RG  K        AGKKK
Subjt:  RKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

Q8LC83 40S ribosomal protein S24-21.6e-5787.12Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELK+KLA MYEVKD NAIF FKFRTHFGGGKS+G+GLIYD+VENAKKFEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNR KKIRGVKKTKA D  K
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK

Q962Q6 40S ribosomal protein S247.3e-3964.39Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        M +   TIRTRKFMTNRLL+RKQ V DVLHPG+P VSK E+++KLA MY+V   + +FVF F+T+FGGGKSTGF LIYD+++ AKKFEPK+RL R+GL  
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK
        K   +RKQ KERKNR KK+RG KK+K   AAK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK

Q9SS17 40S ribosomal protein S24-12.9e-5990.15Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELK+KLA MYEVKD NAIFVFKFRTHFGGGKS+GFGLIYD+VE+AKKFEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNR KKIRGVKKTKA DA K
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK

Arabidopsis top hitse value%identityAlignment
AT3G04920.1 Ribosomal protein S24e family protein2.0e-6090.15Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELK+KLA MYEVKD NAIFVFKFRTHFGGGKS+GFGLIYD+VE+AKKFEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNR KKIRGVKKTKA DA K
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK

AT5G28060.1 Ribosomal protein S24e family protein1.1e-5887.12Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELK+KLA MYEVKD NAIF FKFRTHFGGGKS+G+GLIYD+VENAKKFEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNR KKIRGVKKTKA D  K
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGACAAAGCAGTGACCATACGAACCAGAAAGTTCATGACCAATCGCCTTCTCTCCAGGAAGCAATTCGTCATCGATGTTCTTCACCCAGGAAGACCAAATGTCTC
CAAGGCAGAGCTGAAGGATAAGTTAGCAGGAATGTATGAGGTGAAGGACCTAAATGCAATTTTTGTCTTTAAGTTCCGAACTCACTTTGGAGGTGGAAAATCTACTGGGT
TTGGTTTGATTTATGATTCAGTTGAAAATGCCAAAAAGTTTGAGCCAAAGTACAGACTCATCAGGAATGGACTTGACACTAAAGTAGAAAAATCAAGGAAGCAAATGAAA
GAGAGGAAAAACAGAACCAAGAAGATTCGTGGAGTAAAGAAAACAAAGGCCTCAGACGCTGCCAAGGCTGGAAAGAAGAAATGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAGCTAGCTGGGCCTTAAATGATGGGCTTCGAAGCAAGGTCCATAACAAATAACCTATGTTAGCAACAATGGCGGAAGCTCTAGGGTTTCATCACTATAATTGT
AGGGTTTCATCACCGGATCCAACTCTCTCCTCTTGGCAGAACATTCGCGTTGTTGCTTTCGGTTCACTCTTCTTCACCAACAATGGCAGACAAAGCAGTGACCATACGAA
CCAGAAAGTTCATGACCAATCGCCTTCTCTCCAGGAAGCAATTCGTCATCGATGTTCTTCACCCAGGAAGACCAAATGTCTCCAAGGCAGAGCTGAAGGATAAGTTAGCA
GGAATGTATGAGGTGAAGGACCTAAATGCAATTTTTGTCTTTAAGTTCCGAACTCACTTTGGAGGTGGAAAATCTACTGGGTTTGGTTTGATTTATGATTCAGTTGAAAA
TGCCAAAAAGTTTGAGCCAAAGTACAGACTCATCAGGAATGGACTTGACACTAAAGTAGAAAAATCAAGGAAGCAAATGAAAGAGAGGAAAAACAGAACCAAGAAGATTC
GTGGAGTAAAGAAAACAAAGGCCTCAGACGCTGCCAAGGCTGGAAAGAAGAAATGAGTCGTTTTTGTGCTTTGCCTTTTTTATCTTTTCTTTATTCTATCTTTTTCCCTC
TAAATTTATTTCTTAAGTGGTTTTAGGCACTTTTGAAATGAAATTTTTGGAGTGTTTCTGTAGGGAGCAACTTTGACATCAGTAACATACATTATATTAGCGATAAAAAT
TAAGTAGTCTCCCTGCCATTTTTAATTTTGTATGATGGGGTTTTTTGCCAAAGTTTTCTTTTTTCTTTTAGTATAAATTAGGGGAGGGAGACAACAAATCCTACTTAATG
GGTAGCATTACTCAAATTAATGAGAATTATTTATATTTAAATCTTAAA
Protein sequenceShow/hide protein sequence
MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMK
ERKNRTKKIRGVKKTKASDAAKAGKKK