; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0001348 (gene) of Chayote v1 genome

Gene IDSed0001348
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerase II subunit 4
Genome locationLG01:13894468..13898642
RNA-Seq ExpressionSed0001348
SyntenySed0001348
Gene Ontology termsGO:0000288 - nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (biological process)
GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0031990 - mRNA export from nucleus in response to heat stress (biological process)
GO:0034402 - recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex (biological process)
GO:0045948 - positive regulation of translational initiation (biological process)
GO:0000932 - P-body (cellular component)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0031369 - translation initiation factor binding (molecular function)
InterPro domainsIPR005574 - RNA polymerase subunit RPB4/RPC9
IPR006590 - RNA polymerase Rpb4/RPC9, core
IPR010997 - HRDC-like superfamily
IPR038324 - Rpb4/RPC9 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2287510.1 hypothetical protein GH714_001039 [Hevea brasiliensis]7.5e-6594.93Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQMSDD MNQVSQVFEKS  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE
        TVEEAIAMVPS+KTKGR HDDEAIEKML DLSLIKKFE
Subjt:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE

KAG8649808.1 hypothetical protein MANES_08G141900v8 [Manihot esculenta]7.5e-6594.93Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQMSDD MNQVSQVFEKS  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE
        TVEEAIAMVPS+KTKGR HDDEAIEKML DLSLIKKFE
Subjt:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE

XP_018818161.1 DNA-directed RNA polymerase II subunit 4 [Juglans regia]5.8e-6594.93Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQMSDDA N VSQVFEKSQ YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE
        TVEEAIAMVPS+KTKGR HDDEAIEKML DLSLIKKFE
Subjt:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE

XP_021619869.1 DNA-directed RNA polymerase II subunit 4 [Manihot esculenta]7.5e-6594.93Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQMSDD MNQVSQVFEKS  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE
        TVEEAIAMVPS+KTKGR HDDEAIEKML DLSLIKKFE
Subjt:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE

XP_022133507.1 DNA-directed RNA polymerase II subunit 4 [Momordica charantia]5.8e-6595.65Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMS+D MNQVSQVFEKS  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE
        TVEEAIAMVPSLKTKGR HDDEAIEKML DLSLIKKFE
Subjt:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE

TrEMBL top hitse value%identityAlignment
A0A251KVF2 RPOL4c domain-containing protein3.6e-6594.93Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQMSDD MNQVSQVFEKS  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE
        TVEEAIAMVPS+KTKGR HDDEAIEKML DLSLIKKFE
Subjt:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE

A0A2I4EFI1 DNA-directed RNA polymerase II subunit 42.8e-6594.93Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQMSDDA N VSQVFEKSQ YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE
        TVEEAIAMVPS+KTKGR HDDEAIEKML DLSLIKKFE
Subjt:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE

A0A6J1BWW4 DNA-directed RNA polymerase II subunit 42.8e-6595.65Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMS+D MNQVSQVFEKS  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE
        TVEEAIAMVPSLKTKGR HDDEAIEKML DLSLIKKFE
Subjt:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE

A0A6J1GS12 DNA-directed RNA polymerase II subunit 43.6e-6595.65Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMS+D MNQVSQVFEKS  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE
        TVEEAIAMVPSLK KGRVHDDEAIEKML DLSLIKKFE
Subjt:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE

A0A6J1JHK7 DNA-directed RNA polymerase II subunit 43.6e-6595.65Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMS+D MNQVSQVFEKS  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE
        TVEEAIAMVPSLK KGRVHDDEAIEKML DLSLIKKFE
Subjt:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE

SwissProt top hitse value%identityAlignment
O15514 DNA-directed RNA polymerase II subunit RPB41.2e-2040.15Show/hide
Query:  SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPET
        +G+ EE+A++L    EF  A+ L+N EV ++LEH+ +Q +   D+   ++S+VF K+ +Y  RFSR+KN + +  VR +L + +L +FEL  L NLCPET
Subjt:  SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPET

Query:  VEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE
         EE+ A++PSL  +GR  D+E ++++L D+   + F+
Subjt:  VEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE

O48890 DNA-directed RNA polymerase II subunit 42.7e-6590.58Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHK+EQLQQ+S+D MNQVSQVFEKS  YVKRFSRYKNPDAVRQVREILSR+QL EFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE
        TVEEA+AMVPSLKTKGR HDDEAIEKML DLSL+K+FE
Subjt:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE

Q54S04 DNA-directed RNA polymerase II subunit rpb41.2e-1737.41Show/hide
Query:  EEEENAAELKIGDEFLKAKCLMNCEVSLILEHK----------YEQ---LQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFE
        +EEE+   LK   +   AK L+N EV+++LEH+          + Q   L  +  +++N + + F K+  Y ++FSRYKN  +++QVR  LS+  L EFE
Subjt:  EEEENAAELKIGDEFLKAKCLMNCEVSLILEHK----------YEQ---LQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFE

Query:  LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKF
        +  L NLCPE  +EA +++PSLK   ++ DDE ++ +L +LS ++KF
Subjt:  LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKF

Q9D7M8 DNA-directed RNA polymerase II subunit RPB41.2e-2040.15Show/hide
Query:  SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPET
        +G+ EE+A++L    EF  A+ L+N EV ++LEH+ +Q +   D+   ++S+VF K+ +Y  RFSR+KN + +  VR +L + +L +FEL  L NLCPET
Subjt:  SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPET

Query:  VEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE
         EE+ A++PSL  +GR  D+E ++++L D+   + F+
Subjt:  VEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE

Q9VEA5 DNA-directed RNA polymerase II subunit Rpb46.7e-1638.89Show/hide
Query:  EENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEA
        +E+AA+L+   EF  A+ L+  EV ++L+H+  + Q  S D   + S+VF K+  Y   F ++KN + +   R +L + +L +FEL  LGNLCPE  EEA
Subjt:  EENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEA

Query:  IAMVPSLKTKGRVHDDEAIEKMLTDL
         A++PSL  +GR  D+E + ++L D+
Subjt:  IAMVPSLKTKGRVHDDEAIEKMLTDL

Arabidopsis top hitse value%identityAlignment
AT4G15950.1 RNA polymerase II, Rpb4, core protein7.6e-1536.44Show/hide
Query:  AKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD
        A+C+M+CE   IL+    QL  +S+D   ++   ++++  YV+    Y NP +VR+V E L  Y +++ E+CV+ N   E+V+E +A +PSLKTK  V  
Subjt:  AKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD

Query:  DEAIEKMLTDLSLIKKFE
        ++ ++  L +LS +KK E
Subjt:  DEAIEKMLTDLSLIKKFE

AT5G09920.1 RNA polymerase II, Rpb4, core protein1.9e-6690.58Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHK+EQLQQ+S+D MNQVSQVFEKS  YVKRFSRYKNPDAVRQVREILSR+QL EFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE
        TVEEA+AMVPSLKTKGR HDDEAIEKML DLSL+K+FE
Subjt:  TVEEAIAMVPSLKTKGRVHDDEAIEKMLTDLSLIKKFE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGAGAGGAGGAAGAAAATGCCGCCGAGCTTAAAATTGGGGATGAGTTCTTAAAAGCAAAATGTTTGATGAATTGTGAAGTTTCTTTGATTCTTGAACACAAATA
TGAGCAGCTTCAGCAGATGTCAGATGATGCAATGAATCAAGTTTCTCAAGTGTTCGAAAAATCACAACATTATGTGAAGCGCTTTAGCCGCTATAAAAATCCTGATGCTG
TTCGACAAGTTCGAGAAATTTTAAGCAGGTACCAATTGGCTGAGTTTGAGCTTTGTGTTCTTGGCAACCTTTGTCCTGAAACTGTGGAGGAAGCCATTGCCATGGTGCCA
TCTTTGAAGACTAAAGGAAGGGTGCACGATGATGAAGCAATTGAGAAGATGTTAACCGATCTTTCGCTGATCAAGAAGTTCGAGTAG
mRNA sequenceShow/hide mRNA sequence
GCAAAAGCAAAAGCAAAAAAAAAAAAACAATAACCCTTTCCTGCTTCGATCCTTATTTCCGGCCCTCCATTACTGAATTCACTCTCCCTATTTCTTTCTCTAGTCTCGCA
ATCGTCTACTACTCAGCCGCCGTTATCGTCGCCTCCTTCCGCCACCGTCGCCGCCGCCGTCGCTTCTGATTCTTTTGGTTGACACGAAACTCTAACTTCAAGCATGTCTG
GAGAGGAGGAAGAAAATGCCGCCGAGCTTAAAATTGGGGATGAGTTCTTAAAAGCAAAATGTTTGATGAATTGTGAAGTTTCTTTGATTCTTGAACACAAATATGAGCAG
CTTCAGCAGATGTCAGATGATGCAATGAATCAAGTTTCTCAAGTGTTCGAAAAATCACAACATTATGTGAAGCGCTTTAGCCGCTATAAAAATCCTGATGCTGTTCGACA
AGTTCGAGAAATTTTAAGCAGGTACCAATTGGCTGAGTTTGAGCTTTGTGTTCTTGGCAACCTTTGTCCTGAAACTGTGGAGGAAGCCATTGCCATGGTGCCATCTTTGA
AGACTAAAGGAAGGGTGCACGATGATGAAGCAATTGAGAAGATGTTAACCGATCTTTCGCTGATCAAGAAGTTCGAGTAGATATTATTATCTAAAACAATATGCTTAAAT
CTATTTTCTCATAGAATTATATGATATCATGACTTTATTGGTAGATTTGTAATTGCCATACTGTACGGTCATTTAACCTTTGGTTTAAATTTTACGTGTATTTTAATCTT
TGTGAACGATACAAATATGCAAAAATCAGTTCAGGTGGTAAAATGGTGTATGGTTT
Protein sequenceShow/hide protein sequence
MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDAMNQVSQVFEKSQHYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVP
SLKTKGRVHDDEAIEKMLTDLSLIKKFE