CuGenDBv2

Gene ID	Sed0001376
Organism	Sechium edule (Chayote v1)
Description	RNase H domain-containing protein
Genome location	LG04:8559692..8560285
RNA-Seq Expression	Sed0001376
Synteny	Sed0001376
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR044730 - Ribonuclease H-like domain, plant type

Homology

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GenBank top hits

e value

%identity

Alignment

KAF5443019.1 hypothetical protein F2P56_035616, partial [Juglans regia]

8.1e-20

35.81

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Query:  WQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLNGYAEDFSELDLL
        W P     YK N DA+++    + G+G VIRN  G V A++     + L+A++ EA+A    +L  K LG  R+++E DA  V+N +N  A+D+S + L+
Subjt:  WQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLNGYAEDFSELDLL

Query:  LADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVP
        + DI+ E +NLE    ++ +R +N +AH +AK+A  + +E   ME +P
Subjt:  LADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVP

KAF5443022.1 hypothetical protein F2P56_035619, partial [Juglans regia]

1.8e-19

35.81

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Query:  WQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLNGYAEDFSELDLL
        W P     YK N DA+++    + G+G VIRN  G V A++     + L+A++ EA+A    +L  K LG  R+++E DA  V+N +N  A+D+S + L+
Subjt:  WQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLNGYAEDFSELDLL

Query:  LADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVP
        + DI+ E +NLE     + +R +N +AH +AK+A  + +E   ME +P
Subjt:  LADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVP

XP_018813588.2 uncharacterized protein LOC108985665 [Juglans regia]

2.8e-20

35.29

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Query:  WQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLNGYAEDFSELDLL
        W P     YK N DA+++    + G+G VIRN  G V A++     + L+A++ EA+A    +L  K LG  R+++E DA  V+N +N  A+D+S + L+
Subjt:  WQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLNGYAEDFSELDLL

Query:  LADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVPEPVAH
        + DI+ E +NLE    ++ +R +N +AH +AK+A  + +E   ME +P  + H
Subjt:  LADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVPEPVAH

XP_035540266.1 uncharacterized protein LOC118344236 [Juglans regia]

5.2e-19

35.29

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Query:  WQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLNGYAEDFSELDLL
        W+P     YK N DA+++    + G+G V+RN  G V+A++     +  +A++ EA+A    +L+ K L   RL+I+ DA  V+N LN    D+S +DL+
Subjt:  WQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLNGYAEDFSELDLL

Query:  LADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVPEPVAH
        + DI+ E K+L      + ++K+N +AH +AK+A  + EE   ME VP  + H
Subjt:  LADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVPEPVAH

XP_035542097.1 uncharacterized protein LOC118344805 [Juglans regia]

1.8e-19

35.81

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Query:  WQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLNGYAEDFSELDLL
        W P     YK N DA+++    + G+G VIRN  G V A++     + L+A++ EA+A    +L  K LG  R+++E DA  V+N +N  A+D+S + L+
Subjt:  WQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLNGYAEDFSELDLL

Query:  LADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVP
        + DI+ E +NLE     + +R +N +AH +AK+A  + +E   ME +P
Subjt:  LADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVP

TrEMBL top hits

e value

%identity

Alignment

A0A2I4E2F9 uncharacterized protein LOC108985665

1.3e-20

35.29

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Query:  WQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLNGYAEDFSELDLL
        W P     YK N DA+++    + G+G VIRN  G V A++     + L+A++ EA+A    +L  K LG  R+++E DA  V+N +N  A+D+S + L+
Subjt:  WQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLNGYAEDFSELDLL

Query:  LADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVPEPVAH
        + DI+ E +NLE    ++ +R +N +AH +AK+A  + +E   ME +P  + H
Subjt:  LADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVPEPVAH

A0A6P9DYT1 uncharacterized protein LOC118344236

2.5e-19

35.29

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Query:  WQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLNGYAEDFSELDLL
        W+P     YK N DA+++    + G+G V+RN  G V+A++     +  +A++ EA+A    +L+ K L   RL+I+ DA  V+N LN    D+S +DL+
Subjt:  WQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLNGYAEDFSELDLL

Query:  LADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVPEPVAH
        + DI+ E K+L      + ++K+N +AH +AK+A  + EE   ME VP  + H
Subjt:  LADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVPEPVAH

A0A6P9EGY4 uncharacterized protein LOC118344805

8.7e-20

35.81

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Query:  WQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLNGYAEDFSELDLL
        W P     YK N DA+++    + G+G VIRN  G V A++     + L+A++ EA+A    +L  K LG  R+++E DA  V+N +N  A+D+S + L+
Subjt:  WQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLNGYAEDFSELDLL

Query:  LADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVP
        + DI+ E +NLE     + +R +N +AH +AK+A  + +E   ME +P
Subjt:  LADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVP

A0A803PF09 Uncharacterized protein

1.6e-18

32.18

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Query:  ASLTGNLNYQSKSSSKN-----LWQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIE
        + L  NL  Q   S++       W P      K+N DAA+N T +K G+G V+RN  GEV+A+  KP Q    ++  EA A+   ++WA        ++E
Subjt:  ASLTGNLNYQSKSSSKN-----LWQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIE

Query:  SDAATVINKLNGYAEDFSELDLLLADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVPEPV
        +DA  V + LN +  D S    L+ D+R    +          R+AN  AHG+AK A  + E+  W+ ++P P+
Subjt:  SDAATVINKLNGYAEDFSELDLLLADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVPEPV

A0A803Q3I7 Uncharacterized protein

1.6e-18

35.76

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Query:  WQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLNGYAEDFSELDLL
        WQP  + C+KLN DAA N   +K G+G +IR+ NG V+A+  K +Q    ++  EA A+   + WA    F    IE+DA  V N L+  ++D S    L
Subjt:  WQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLNGYAEDFSELDLL

Query:  LADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVPEPV
        + D+R         +     R AN  AHG+AK +  + ++FCW+ +VP P+
Subjt:  LADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVPEPV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

5.8e-08

31.78

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Query:  KLNSDAALNFTGQKFGLGCVIRNKNGEVM---ASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLNGYAEDF-SELDLLLADIR
        K N+DA       + G+G ++RN++G V+   A      + VLEAE+    A+   +L      ++R+I ESDA  ++N LN  ++DF   L   L DI+
Subjt:  KLNSDAALNFTGQKFGLGCVIRNKNGEVM---ASMEKPMQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLNGYAEDF-SELDLLLADIR

Query:  METKNLETCVFRWCNRKANFLAHGIAKEA
            + E   F +  R  N +A  IA+E+
Subjt:  METKNLETCVFRWCNRKANFLAHGIAKEA

AT4G29090.1 Ribonuclease H-like superfamily protein

4.4e-08

30.14

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Query:  QSKSSSKNLWQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEV--MASMEKP-MQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLN
        Q   SS   W+P      K N+DA  N   ++ G+G V+RN+ GEV  M +   P ++ VLEAE+    A+   +L      +  +I ESD+  +I  LN
Subjt:  QSKSSSKNLWQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEV--MASMEKP-MQVVLEAEIGEAIAIHDGILWAKDLGFQRLIIESDAATVINKLN

Query:  GYAEDFSELDLLLADIRMETKNLETCVFRWCNRKANFLAHGIAKEA
           E +  L   + D++          F +  R+ N LA  +A+E+
Subjt:  GYAEDFSELDLLLADIRMETKNLETCVFRWCNRKANFLAHGIAKEA

Sequences

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CDS sequence

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ATGTCGGTGAGTACAAGTTCTTGCCATCCTACATTTGATTGGTTTTACTGCCAAAACTATTACTATGAATTTGTTGGGGCATCTTTAACAGGCAATTTAAATTATCAATC
TAAGTCTTCTAGCAAAAACTTGTGGCAACCTCTGGATAGTCTATGTTATAAATTGAACTCTGATGCTGCTTTGAATTTTACAGGTCAAAAATTTGGATTGGGTTGCGTTA
TTCGAAACAAAAATGGAGAAGTCATGGCTTCAATGGAAAAACCAATGCAAGTTGTTCTCGAGGCGGAGATCGGTGAAGCTATCGCCATTCACGACGGGATTTTGTGGGCG
AAAGATTTGGGTTTCCAAAGACTTATAATTGAATCAGACGCTGCCACAGTAATTAACAAATTAAATGGTTATGCAGAGGATTTTTCTGAACTAGATTTGTTGTTGGCGGA
TATTAGGATGGAGACCAAGAATTTGGAAACTTGCGTTTTCCGCTGGTGTAATCGAAAGGCGAATTTTCTTGCACATGGAATTGCGAAAGAAGCCGCCAACGTCGTTGAAG
AGTTTTGCTGGATGGAAAAAGTGCCTGAGCCCGTCGCTCATTAA

mRNA sequence

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Protein sequence

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MSVSTSSCHPTFDWFYCQNYYYEFVGASLTGNLNYQSKSSSKNLWQPLDSLCYKLNSDAALNFTGQKFGLGCVIRNKNGEVMASMEKPMQVVLEAEIGEAIAIHDGILWA
KDLGFQRLIIESDAATVINKLNGYAEDFSELDLLLADIRMETKNLETCVFRWCNRKANFLAHGIAKEAANVVEEFCWMEKVPEPVAH

Sed0001376 (gene) of Chayote v1 genome