CuGenDBv2

Gene ID	Sed0001393
Organism	Sechium edule (Chayote v1)
Description	Lipocln_cytosolic_FA-bd_dom domain-containing protein
Genome location	LG04:42645879..42648278
RNA-Seq Expression	Sed0001393
Synteny	Sed0001393
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0053105.1 chloroplastic lipocalin [Cucumis melo var. makuwa]

2.4e-13

34.39

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Query:  AVSADLSRLENFEQLASAENAARLPFDNDSHG---------------------GRWFEVSSFKCGLSRQ-----------VTILMNKMFRLLST------
        A+S D+ R EN  QLA+AENAA LPF NDS G                     GRWFEV+S K G + Q            T  M      + T      
Subjt:  AVSADLSRLENFEQLASAENAARLPFDNDSHG---------------------GRWFEVSSFKCGLSRQ-----------VTILMNKMFRLLST------

Query:  -------------CRAYTHLLWQHRHYKLKKQEIIKEKFHL-----------PYDAIATDYYDNFATVSGAKDLSSVQ----------------------
                     C A   L  Q    +L+KQE+IKEK +L           PYD IATD YDNFA VSGAKDLS VQ                      
Subjt:  -------------CRAYTHLLWQHRHYKLKKQEIIKEKFHL-----------PYDAIATDYYDNFATVSGAKDLSSVQ----------------------

Query:  -----------PASC---------IDVTMSVLQEALKNKFPDLGLNAIIEFQP
                   P  C           ++MS +Q+AL N+FPDLGL A IE  P
Subjt:  -----------PASC---------IDVTMSVLQEALKNKFPDLGLNAIIEFQP

XP_004151949.1 chloroplastic lipocalin isoform X1 [Cucumis sativus]

1.1e-13

34.78

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Query:  AVSADLSRLENFEQLASAENAARLPFDNDSHG---------------------GRWFEVSSFKCGLSRQ-----------VTILMNKMFRLLST------
        A+S D+ R EN  QLASAENAA LPF NDS G                     GRWFEV+S K G + Q            T  M      + T      
Subjt:  AVSADLSRLENFEQLASAENAARLPFDNDSHG---------------------GRWFEVSSFKCGLSRQ-----------VTILMNKMFRLLST------

Query:  -------------CRAYTHLLWQHRHYKLKKQEIIKEKFHL-----------PYDAIATDYYDNFATVSGAKDLSSVQ----------------------
                     C A   L  Q    +L+KQE+IKEK +L           PYD IATD YDNFA VSGAKDLS VQ                      
Subjt:  -------------CRAYTHLLWQHRHYKLKKQEIIKEKFHL-----------PYDAIATDYYDNFATVSGAKDLSSVQ----------------------

Query:  -----------PASC---------IDVTMSVLQEALKNKFPDLGLNAIIEFQP
                   P  C           ++MS +Q+AL N+FPDLGL A IE  P
Subjt:  -----------PASC---------IDVTMSVLQEALKNKFPDLGLNAIIEFQP

XP_022139350.1 chloroplastic lipocalin [Momordica charantia]

1.9e-13

34.26

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Query:  AVSADLSRLENFEQLASAENAARLPFDNDSHG---------------------GRWFEVSSFKCGLSRQ------------VTILMNKMFRLLSTC----
        AVSADLSR EN  QLA+AENAA LPFD+ S G                     GRWFEV+S K G + Q               +     ++ + C    
Subjt:  AVSADLSRLENFEQLASAENAARLPFDNDSHG---------------------GRWFEVSSFKCGLSRQ------------VTILMNKMFRLLSTC----

Query:  --------RAYTHLL----WQHRHYKLKKQEIIKEKFHL-----------PYDAIATDYYDNFATVSGAKDLSSVQ------------------------
                R     L     Q    +L+ QE+IKEK +L           PYD IATD YDNFA VSGAKDLS VQ                        
Subjt:  --------RAYTHLL----WQHRHYKLKKQEIIKEKFHL-----------PYDAIATDYYDNFATVSGAKDLSSVQ------------------------

Query:  ---------PASC---------IDVTMSVLQEALKNKFPDLGLNAIIEFQP
                 P  C           ++MS +Q+AL N+FPDLGL A IE  P
Subjt:  ---------PASC---------IDVTMSVLQEALKNKFPDLGLNAIIEFQP

XP_023523863.1 chloroplastic lipocalin [Cucurbita pepo subsp. pepo]

1.9e-13

33.47

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Query:  AVSADLSRLENFEQLASAENAARLPFDNDSHG---------------------GRWFEVSSFKCGLSRQ------------VTILMNKMFRLLSTC----
        A+SADLSR ENF QLASAEN A LPF++DS G                     GRWFEV+S K G + Q               +     ++ + C    
Subjt:  AVSADLSRLENFEQLASAENAARLPFDNDSHG---------------------GRWFEVSSFKCGLSRQ------------VTILMNKMFRLLSTC----

Query:  --------RAYTHLL----WQHRHYKLKKQEIIKEKFHL-----------PYDAIATDYYDNFATVSGAKDLSSVQ------------------------
                R     L     Q    +L+ +E+IKEK +L           PYD IATD YDNFA VSGAKDLS VQ                        
Subjt:  --------RAYTHLL----WQHRHYKLKKQEIIKEKFHL-----------PYDAIATDYYDNFATVSGAKDLSSVQ------------------------

Query:  ---------PASC---------IDVTMSVLQEALKNKFPDLGLNAIIEFQP
                 P  C           ++MS +Q+AL N+FPDLGL+A I   P
Subjt:  ---------PASC---------IDVTMSVLQEALKNKFPDLGLNAIIEFQP

XP_038896860.1 chloroplastic lipocalin [Benincasa hispida]

2.9e-14

34.26

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Query:  AVSADLSRLENFEQLASAENAARLPFDNDSHG---------------------GRWFEVSSFKCGLSRQ------------VTILMNKMFRLLSTC----
        A+S D+ R EN  QLASAENAA LPFDNDS G                     GRWFEV+S K G + Q               +     ++ + C    
Subjt:  AVSADLSRLENFEQLASAENAARLPFDNDSHG---------------------GRWFEVSSFKCGLSRQ------------VTILMNKMFRLLSTC----

Query:  --------RAYTHLLWQHRHYK----LKKQEIIKEKFHL-----------PYDAIATDYYDNFATVSGAKDLSSVQ------------------------
                R     L +    K    L+KQE+IKEK +L           PYD IATD YDNFA VSGAKDLS VQ                        
Subjt:  --------RAYTHLLWQHRHYK----LKKQEIIKEKFHL-----------PYDAIATDYYDNFATVSGAKDLSSVQ------------------------

Query:  ---------PASC---------IDVTMSVLQEALKNKFPDLGLNAIIEFQP
                 P  C           ++MS +Q+AL N+FPDLGL A IE  P
Subjt:  ---------PASC---------IDVTMSVLQEALKNKFPDLGLNAIIEFQP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LBK6 Lipocln_cytosolic_FA-bd_dom domain-containing protein

5.3e-14

34.78

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Query:  AVSADLSRLENFEQLASAENAARLPFDNDSHG---------------------GRWFEVSSFKCGLSRQ-----------VTILMNKMFRLLST------
        A+S D+ R EN  QLASAENAA LPF NDS G                     GRWFEV+S K G + Q            T  M      + T      
Subjt:  AVSADLSRLENFEQLASAENAARLPFDNDSHG---------------------GRWFEVSSFKCGLSRQ-----------VTILMNKMFRLLST------

Query:  -------------CRAYTHLLWQHRHYKLKKQEIIKEKFHL-----------PYDAIATDYYDNFATVSGAKDLSSVQ----------------------
                     C A   L  Q    +L+KQE+IKEK +L           PYD IATD YDNFA VSGAKDLS VQ                      
Subjt:  -------------CRAYTHLLWQHRHYKLKKQEIIKEKFHL-----------PYDAIATDYYDNFATVSGAKDLSSVQ----------------------

Query:  -----------PASC---------IDVTMSVLQEALKNKFPDLGLNAIIEFQP
                   P  C           ++MS +Q+AL N+FPDLGL A IE  P
Subjt:  -----------PASC---------IDVTMSVLQEALKNKFPDLGLNAIIEFQP

A0A1S3BYS9 chloroplastic lipocalin

1.2e-13

34.39

Show/hide

Query:  AVSADLSRLENFEQLASAENAARLPFDNDSHG---------------------GRWFEVSSFKCGLSRQ-----------VTILMNKMFRLLST------
        A+S D+ R EN  QLA+AENAA LPF NDS G                     GRWFEV+S K G + Q            T  M      + T      
Subjt:  AVSADLSRLENFEQLASAENAARLPFDNDSHG---------------------GRWFEVSSFKCGLSRQ-----------VTILMNKMFRLLST------

Query:  -------------CRAYTHLLWQHRHYKLKKQEIIKEKFHL-----------PYDAIATDYYDNFATVSGAKDLSSVQ----------------------
                     C A   L  Q    +L+KQE+IKEK +L           PYD IATD YDNFA VSGAKDLS VQ                      
Subjt:  -------------CRAYTHLLWQHRHYKLKKQEIIKEKFHL-----------PYDAIATDYYDNFATVSGAKDLSSVQ----------------------

Query:  -----------PASC---------IDVTMSVLQEALKNKFPDLGLNAIIEFQP
                   P  C           ++MS +Q+AL N+FPDLGL A IE  P
Subjt:  -----------PASC---------IDVTMSVLQEALKNKFPDLGLNAIIEFQP

A0A5D3BW66 Chloroplastic lipocalin

1.2e-13

34.39

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Query:  AVSADLSRLENFEQLASAENAARLPFDNDSHG---------------------GRWFEVSSFKCGLSRQ-----------VTILMNKMFRLLST------
        A+S D+ R EN  QLA+AENAA LPF NDS G                     GRWFEV+S K G + Q            T  M      + T      
Subjt:  AVSADLSRLENFEQLASAENAARLPFDNDSHG---------------------GRWFEVSSFKCGLSRQ-----------VTILMNKMFRLLST------

Query:  -------------CRAYTHLLWQHRHYKLKKQEIIKEKFHL-----------PYDAIATDYYDNFATVSGAKDLSSVQ----------------------
                     C A   L  Q    +L+KQE+IKEK +L           PYD IATD YDNFA VSGAKDLS VQ                      
Subjt:  -------------CRAYTHLLWQHRHYKLKKQEIIKEKFHL-----------PYDAIATDYYDNFATVSGAKDLSSVQ----------------------

Query:  -----------PASC---------IDVTMSVLQEALKNKFPDLGLNAIIEFQP
                   P  C           ++MS +Q+AL N+FPDLGL A IE  P
Subjt:  -----------PASC---------IDVTMSVLQEALKNKFPDLGLNAIIEFQP

A0A6J1CC31 chloroplastic lipocalin

9.1e-14

34.26

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Query:  AVSADLSRLENFEQLASAENAARLPFDNDSHG---------------------GRWFEVSSFKCGLSRQ------------VTILMNKMFRLLSTC----
        AVSADLSR EN  QLA+AENAA LPFD+ S G                     GRWFEV+S K G + Q               +     ++ + C    
Subjt:  AVSADLSRLENFEQLASAENAARLPFDNDSHG---------------------GRWFEVSSFKCGLSRQ------------VTILMNKMFRLLSTC----

Query:  --------RAYTHLL----WQHRHYKLKKQEIIKEKFHL-----------PYDAIATDYYDNFATVSGAKDLSSVQ------------------------
                R     L     Q    +L+ QE+IKEK +L           PYD IATD YDNFA VSGAKDLS VQ                        
Subjt:  --------RAYTHLL----WQHRHYKLKKQEIIKEKFHL-----------PYDAIATDYYDNFATVSGAKDLSSVQ------------------------

Query:  ---------PASC---------IDVTMSVLQEALKNKFPDLGLNAIIEFQP
                 P  C           ++MS +Q+AL N+FPDLGL A IE  P
Subjt:  ---------PASC---------IDVTMSVLQEALKNKFPDLGLNAIIEFQP

A0A6J1FHN5 chloroplastic lipocalin

1.0e-12

32.8

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Query:  AVSADLSRLENFEQLASAENAARLPFDNDSHG--------------------GRWFEVSSFKCGLSRQ------------VTILMNKMFRLLSTC-----
        A+SADLSR ENF  LASAE+ A LPF++DS G                    GRWFEV+S K G + Q               +     ++ + C     
Subjt:  AVSADLSRLENFEQLASAENAARLPFDNDSHG--------------------GRWFEVSSFKCGLSRQ------------VTILMNKMFRLLSTC-----

Query:  -------RAYTHLL----WQHRHYKLKKQEIIKEKFHL-----------PYDAIATDYYDNFATVSGAKDLSSVQ-------------------------
               R     L     Q    +L+ +E+IKEK +L           PYD IATD YDNFA VSGAKDLS VQ                         
Subjt:  -------RAYTHLL----WQHRHYKLKKQEIIKEKFHL-----------PYDAIATDYYDNFATVSGAKDLSSVQ-------------------------

Query:  --------PASC---------IDVTMSVLQEALKNKFPDLGLNAIIEFQP
                P  C           ++MS +Q+AL N+FPDLGL+A I   P
Subjt:  --------PASC---------IDVTMSVLQEALKNKFPDLGLNAIIEFQP

SwissProt top hits

e value

%identity

Alignment

Q9STS7 Chloroplastic lipocalin

3.9e-06

27.27

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Query:  VSADLSR-LENFEQLASA----ENAARLPFDNDS--------------------HGGRWFEVSSFKCGLSRQ------------VTILMNKMFRLLSTC-
        ++ DLS   +N  QL SA    EN   LP D DS                    + GRWFEV+S K G + Q               +     R+ + C 
Subjt:  VSADLSR-LENFEQLASA----ENAARLPFDNDS--------------------HGGRWFEVSSFKCGLSRQ------------VTILMNKMFRLLSTC-

Query:  -----------RAYTHLL----WQHRHYKLKKQEIIKEKF-----------HLPYDAIATDYYDNFATVSGAKDLSSVQ---------------------
                   R     +     +     L+KQE+IKEK             LPYD IATD YDN+A VSGAKD   VQ                     
Subjt:  -----------RAYTHLL----WQHRHYKLKKQEIIKEKF-----------HLPYDAIATDYYDNFATVSGAKDLSSVQ---------------------

Query:  ------------PASC--------IDVTMSVLQEALKNKFPDLGLNAIIEFQP
                    P  C          ++M  +++ L N+FPDLGL   ++F P
Subjt:  ------------PASC--------IDVTMSVLQEALKNKFPDLGLNAIIEFQP

Arabidopsis top hits

e value

%identity

Alignment

AT3G47860.1 chloroplastic lipocalin

2.8e-07

27.27

Show/hide

Query:  VSADLSR-LENFEQLASA----ENAARLPFDNDS--------------------HGGRWFEVSSFKCGLSRQ------------VTILMNKMFRLLSTC-
        ++ DLS   +N  QL SA    EN   LP D DS                    + GRWFEV+S K G + Q               +     R+ + C 
Subjt:  VSADLSR-LENFEQLASA----ENAARLPFDNDS--------------------HGGRWFEVSSFKCGLSRQ------------VTILMNKMFRLLSTC-

Query:  -----------RAYTHLL----WQHRHYKLKKQEIIKEKF-----------HLPYDAIATDYYDNFATVSGAKDLSSVQ---------------------
                   R     +     +     L+KQE+IKEK             LPYD IATD YDN+A VSGAKD   VQ                     
Subjt:  -----------RAYTHLL----WQHRHYKLKKQEIIKEKF-----------HLPYDAIATDYYDNFATVSGAKDLSSVQ---------------------

Query:  ------------PASC--------IDVTMSVLQEALKNKFPDLGLNAIIEFQP
                    P  C          ++M  +++ L N+FPDLGL   ++F P
Subjt:  ------------PASC--------IDVTMSVLQEALKNKFPDLGLNAIIEFQP

Sequences

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CDS sequence

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ATGGGTCCAATCCAATGCGCTGTCTCCGCAGATCTCTCTCGCCTCGAAAACTTCGAGCAGCTTGCAAGTGCAGAGAATGCAGCAAGGCTCCCATTTGACAATGATTCTCA
TGGAGGGAGATGGTTCGAAGTTTCTTCGTTTAAATGCGGACTTTCTCGGCAAGTAACCATATTGATGAATAAGATGTTTCGCCTTTTATCGACATGTAGGGCGTATACAC
ATTTGTTATGGCAACACCGGCATTACAAGCTGAAGAAGCAGGAGATTATCAAGGAGAAATTTCACCTGCCATATGATGCCATTGCAACTGATTATTATGACAACTTTGCT
ACTGTTTCTGGAGCAAAAGACCTTAGTTCTGTTCAGCCAGCTAGCTGCATTGATGTCACAATGTCTGTATTGCAAGAGGCTTTGAAAAATAAATTTCCAGATCTAGGACT
AAATGCTATTATTGAATTTCAACCCATTCTTTTACTAGTGTATTTTATGCTTTCAAAAAGCTTCTATAGCTCTATTTCAAGCAGTTTTGTGGTTCTGTTATTGCTGAGCA
CTTCCTTTACTTTTGTGTTTAGGTTTTGA

mRNA sequence

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Protein sequence

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MGPIQCAVSADLSRLENFEQLASAENAARLPFDNDSHGGRWFEVSSFKCGLSRQVTILMNKMFRLLSTCRAYTHLLWQHRHYKLKKQEIIKEKFHLPYDAIATDYYDNFA
TVSGAKDLSSVQPASCIDVTMSVLQEALKNKFPDLGLNAIIEFQPILLLVYFMLSKSFYSSISSSFVVLLLLSTSFTFVFRF

Sed0001393 (gene) of Chayote v1 genome