; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0001399 (gene) of Chayote v1 genome

Gene IDSed0001399
OrganismSechium edule (Chayote v1)
DescriptionProtein transport protein Sec61 subunit beta
Genome locationLG05:39711864..39713055
RNA-Seq ExpressionSed0001399
SyntenySed0001399
Gene Ontology termsGO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation (biological process)
GO:0031204 - posttranslational protein targeting to membrane, translocation (biological process)
GO:0005784 - Sec61 translocon complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR016482 - Protein transport protein SecG/Sec61-beta/Sbh
IPR030671 - Protein transport Sec61-beta/Sbh


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605540.1 Syntaxin-71, partial [Cucurbita argyrosperma subsp. sororia]1.3e-3188.66Show/hide
Query:  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
        MARG SQSQ    STSRPGV APRGSAAATAGLRRRRLG STS AG+TGLV  GSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
Subjt:  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG

XP_004149541.1 protein transport protein Sec61 subunit beta [Cucumis sativus]8.3e-3185.86Show/hide
Query:  MARGASQSQ------STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
        MARGASQSQ      ST+RPGV APRGSAAATAGLRRRR G STSA+ STGLVG GSSGGGNMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFG
Subjt:  MARGASQSQ------STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG

XP_022140347.1 protein transport protein Sec61 subunit beta [Momordica charantia]3.7e-3186.6Show/hide
Query:  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
        MARG SQSQ    STSRPGV APRGSAAATAGLRRRRL +ST +AGS G+VGAGSSGGGNMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFG
Subjt:  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG

XP_022958107.1 protein transport protein Sec61 subunit beta [Cucurbita moschata]1.3e-3188.66Show/hide
Query:  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
        MARG SQSQ    STSRPGV APRGSAAATAGLRRRRLG STS AG+TGLV  GSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
Subjt:  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG

XP_038902812.1 protein transport protein Sec61 subunit beta [Benincasa hispida]2.9e-3188.66Show/hide
Query:  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
        MARG SQSQ    STSRPGV APRGSAAATAGLRRRR G STSAA STGLVG GSSGGGNMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFG
Subjt:  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG

TrEMBL top hitse value%identityAlignment
A0A0A0KHR1 Protein transport protein Sec61 subunit beta4.0e-3185.86Show/hide
Query:  MARGASQSQ------STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
        MARGASQSQ      ST+RPGV APRGSAAATAGLRRRR G STSA+ STGLVG GSSGGGNMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFG
Subjt:  MARGASQSQ------STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG

A0A5D3CTD4 Protein transport protein Sec61 subunit beta5.3e-3185.86Show/hide
Query:  MARGASQSQ------STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
        MARGASQSQ      ST+RPGV APRGSAAATAGLRRRR G STSA  STGLVG GSSGGGNMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFG
Subjt:  MARGASQSQ------STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG

A0A6J1CGL0 Protein transport protein Sec61 subunit beta1.8e-3186.6Show/hide
Query:  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
        MARG SQSQ    STSRPGV APRGSAAATAGLRRRRL +ST +AGS G+VGAGSSGGGNMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFG
Subjt:  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG

A0A6J1H102 Protein transport protein Sec61 subunit beta6.2e-3288.66Show/hide
Query:  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
        MARG SQSQ    STSRPGV APRGSAAATAGLRRRRLG STS AG+TGLV  GSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
Subjt:  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG

A0A6J1JZ65 Protein transport protein Sec61 subunit beta6.2e-3288.66Show/hide
Query:  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
        MARG SQSQ    STSRPGV APRGSAAATAGLRRRRLG STS AG+TGLV  GSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
Subjt:  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG

SwissProt top hitse value%identityAlignment
A8I6P9 Protein transport protein Sec61 subunit beta4.8e-0543.33Show/hide
Query:  SQSQSTSRPGVGAPRGSAAAT--AGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
        SQSQ+++    G    S A T  AG  RRR    +  +G+T    A        + FYTDD PG K+SP VV+ +SL FI FVT LHV G
Subjt:  SQSQSTSRPGVGAPRGSAAAT--AGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG

P38389 Protein transport protein Sec61 subunit beta1.3e-1363.41Show/hide
Query:  GVGAP-RGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGG--GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
        G GAP RGSAAATA +RRR+    TS AG     G G+SGG  G+ML+FYTDDAPGLKISP VVL++S+ FI FV  LHV G
Subjt:  GVGAP-RGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGG--GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG

P60467 Protein transport protein Sec61 subunit beta4.8e-0541.67Show/hide
Query:  STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
        S+ R    A    AA +   +R+     T +AG T      S+G G M RFYT+D+PGLK+ P  VLV+SL FI  V  LH++G
Subjt:  STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG

P60468 Protein transport protein Sec61 subunit beta4.8e-0541.67Show/hide
Query:  STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
        S+ R    A    AA +   +R+     T +AG T      S+G G M RFYT+D+PGLK+ P  VLV+SL FI  V  LH++G
Subjt:  STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG

Q9CQS8 Protein transport protein Sec61 subunit beta4.8e-0541.67Show/hide
Query:  STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
        S+ R    A    AA +   +R+     T +AG T      S+G G M RFYT+D+PGLK+ P  VLV+SL FI  V  LH++G
Subjt:  STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG

Arabidopsis top hitse value%identityAlignment
AT2G45070.1 Preprotein translocase Sec, Sec61-beta subunit protein8.9e-1563.41Show/hide
Query:  GVGAP-RGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGG--GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
        G GAP RGSAAATA +RRR+    TS AG     G G+SGG  G+ML+FYTDDAPGLKISP VVL++S+ FI FV  LHV G
Subjt:  GVGAP-RGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGG--GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG

AT2G45070.2 Preprotein translocase Sec, Sec61-beta subunit protein8.9e-1563.41Show/hide
Query:  GVGAP-RGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGG--GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
        G GAP RGSAAATA +RRR+    TS AG     G G+SGG  G+ML+FYTDDAPGLKISP VVL++S+ FI FV  LHV G
Subjt:  GVGAP-RGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGG--GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG

AT2G45070.3 Preprotein translocase Sec, Sec61-beta subunit protein8.9e-1563.41Show/hide
Query:  GVGAP-RGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGG--GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
        G GAP RGSAAATA +RRR+    TS AG     G G+SGG  G+ML+FYTDDAPGLKISP VVL++S+ FI FV  LHV G
Subjt:  GVGAP-RGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGG--GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG

AT2G45070.4 Preprotein translocase Sec, Sec61-beta subunit protein8.9e-1563.41Show/hide
Query:  GVGAP-RGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGG--GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
        G GAP RGSAAATA +RRR+    TS AG     G G+SGG  G+ML+FYTDDAPGLKISP VVL++S+ FI FV  LHV G
Subjt:  GVGAP-RGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGG--GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG

AT5G60460.1 Preprotein translocase Sec, Sec61-beta subunit protein3.5e-2771.57Show/hide
Query:  MARGASQSQ-------STSRPGVGAPRGSAAATAGLRRRRL--GSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHV
        MARG+SQSQ       ST+RPG+ APRGSAAATAG+RRRRL  G   S+ G +G VG+GSS   NMLRFYTDDAPGLKISPTVVL++SLCFIGFVT LHV
Subjt:  MARGASQSQ-------STSRPGVGAPRGSAAATAGLRRRRL--GSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHV

Query:  FG
        FG
Subjt:  FG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAGAGGCGCTTCTCAGTCCCAATCCACCTCCAGGCCCGGCGTCGGGGCTCCTCGTGGATCCGCGGCGGCGACGGCCGGCCTCCGCCGTCGCCGTCTCGGCTCCTC
CACTTCCGCCGCCGGATCTACCGGACTTGTTGGCGCCGGATCAAGCGGCGGCGGCAACATGCTGAGGTTCTACACCGACGATGCTCCTGGTTTGAAGATTTCTCCGACAG
TCGTCCTCGTCGTCAGCCTCTGCTTCATCGGCTTCGTCACCGGCCTCCACGTCTTCGGTATCTCTGTTAATAAAGTAGAGATTTTGAGGATGGCTAAAATAGGCTCCACT
ATGCACAAGCAAGATTTTAAGTATTCTTTGTTGAGTAAACTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCAGAGGCGCTTCTCAGTCCCAATCCACCTCCAGGCCCGGCGTCGGGGCTCCTCGTGGATCCGCGGCGGCGACGGCCGGCCTCCGCCGTCGCCGTCTCGGCTCCTC
CACTTCCGCCGCCGGATCTACCGGACTTGTTGGCGCCGGATCAAGCGGCGGCGGCAACATGCTGAGGTTCTACACCGACGATGCTCCTGGTTTGAAGATTTCTCCGACAG
TCGTCCTCGTCGTCAGCCTCTGCTTCATCGGCTTCGTCACCGGCCTCCACGTCTTCGGTATCTCTGTTAATAAAGTAGAGATTTTGAGGATGGCTAAAATAGGCTCCACT
ATGCACAAGCAAGATTTTAAGTATTCTTTGTTGAGTAAACTTTAG
Protein sequenceShow/hide protein sequence
MARGASQSQSTSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGISVNKVEILRMAKIGST
MHKQDFKYSLLSKL